Wall clock time and date at job start Tue Mar 31 2020 08:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99574 * 2 1 4 4 H 1.48497 * 109.47267 * 270.00312 * 3 2 1 5 5 H 1.48500 * 109.46959 * 30.00175 * 3 2 1 6 6 H 1.48493 * 109.46869 * 149.99899 * 3 2 1 7 7 C 1.37871 * 120.00442 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00167 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00049 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99558 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00526 * 354.91710 * 11 10 9 13 13 C 1.50700 * 119.99397 * 174.91431 * 11 10 9 14 14 C 1.53002 * 115.55120 * 65.37856 * 13 11 10 15 15 C 1.53005 * 109.47234 * 65.26976 * 14 13 11 16 16 O 1.42898 * 109.47290 * 174.98636 * 15 14 13 17 17 C 1.42900 * 113.99851 * 180.02562 * 16 15 14 18 18 C 1.50696 * 109.46738 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00024 * 90.00103 * 18 17 16 20 20 C 1.38235 * 120.00433 * 179.97438 * 19 18 17 21 21 C 1.38234 * 119.99781 * 0.09430 * 20 19 18 22 22 C 1.38239 * 120.00106 * 359.86080 * 21 20 19 23 23 C 1.38234 * 119.99772 * 0.09296 * 22 21 20 24 24 C 1.52999 * 117.49826 * 211.04777 * 13 11 10 25 25 C 1.52994 * 117.50191 * 279.70523 * 13 11 10 26 26 H 0.96994 * 120.00727 * 0.02562 * 1 2 3 27 27 H 1.08990 * 109.47558 * 59.99643 * 9 7 2 28 28 H 1.09009 * 109.46896 * 299.99272 * 9 7 2 29 29 H 0.96993 * 120.00004 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.47374 * 305.27129 * 14 13 11 31 31 H 1.08995 * 109.47097 * 185.26963 * 14 13 11 32 32 H 1.09008 * 109.46639 * 54.98528 * 15 14 13 33 33 H 1.08998 * 109.47047 * 294.99059 * 15 14 13 34 34 H 1.09001 * 109.47321 * 60.00149 * 17 16 15 35 35 H 1.08992 * 109.46954 * 299.99653 * 17 16 15 36 36 H 1.07998 * 119.99985 * 359.69986 * 19 18 17 37 37 H 1.08000 * 120.00705 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00014 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.00012 * 180.02562 * 22 21 20 40 40 H 1.08000 * 119.99861 * 179.97438 * 23 22 21 41 41 H 1.09000 * 117.49764 * 215.00434 * 24 13 11 42 42 H 1.09004 * 117.49901 * 0.02562 * 24 13 11 43 43 H 1.09008 * 117.49815 * 359.97438 * 25 13 11 44 44 H 1.09008 * 117.50265 * 144.97289 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1938 0.0000 10 7 4.0000 -2.5751 -0.0001 11 6 5.3252 -2.8212 -0.0001 12 8 6.1124 -1.9034 -0.0931 13 6 5.8285 -4.2369 0.1154 14 6 5.4865 -5.1568 -1.0584 15 6 6.1984 -4.6612 -2.3189 16 8 5.9740 -5.5840 -3.3866 17 6 6.5999 -5.2131 -4.6166 18 6 6.2991 -6.2516 -5.6663 19 6 5.1784 -6.1223 -6.4653 20 6 4.9027 -7.0746 -7.4286 21 6 5.7467 -8.1572 -7.5917 22 6 6.8679 -8.2860 -6.7934 23 6 7.1440 -7.3332 -5.8307 24 6 7.1716 -4.4543 0.8153 25 6 5.8705 -4.8600 1.5121 26 1 -0.4851 0.8399 -0.0004 27 1 3.8746 -0.6806 0.8904 28 1 3.8752 -0.6795 -0.8896 29 1 3.3698 -3.3123 -0.0001 30 1 4.4091 -5.1502 -1.2233 31 1 5.8133 -6.1716 -0.8319 32 1 7.2682 -4.5831 -2.1249 33 1 5.8069 -3.6825 -2.5962 34 1 7.6779 -5.1467 -4.4701 35 1 6.2171 -4.2458 -4.9417 36 1 4.5158 -5.2797 -6.3339 37 1 4.0270 -6.9739 -8.0526 38 1 5.5311 -8.9015 -8.3441 39 1 7.5274 -9.1317 -6.9211 40 1 8.0197 -7.4341 -5.2068 41 1 7.8115 -5.2526 0.4394 42 1 7.6909 -3.5733 1.1925 43 1 5.5345 -4.2457 2.3476 44 1 5.6541 -5.9252 1.5949 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427637505.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:07 Heat of formation + Delta-G solvation = -44.162380 kcal Electronic energy + Delta-G solvation = -23607.113846 eV Core-core repulsion = 20103.816721 eV Total energy + Delta-G solvation = -3503.297126 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.82146 -39.50349 -37.75073 -36.48965 -34.31165 -32.49677 -32.32865 -31.11848 -30.45302 -28.14095 -26.17000 -24.13634 -22.89205 -22.79878 -22.30733 -21.54226 -21.17906 -19.16779 -17.30189 -16.96137 -16.60588 -16.39284 -16.02251 -15.59249 -15.27003 -14.96629 -14.93189 -14.37628 -14.22620 -13.84727 -13.63973 -13.34260 -13.13051 -12.94572 -12.70422 -12.44467 -12.22514 -12.00802 -11.65428 -11.56024 -11.46348 -11.19589 -11.10362 -11.05138 -10.79979 -10.46263 -10.05607 -9.92792 -9.67264 -9.50708 -9.18055 -9.13532 -9.05595 -8.79266 -8.17254 -6.22513 -4.24883 1.04371 1.18758 3.08573 3.25249 3.28588 3.31901 3.39746 3.64269 3.88676 4.01884 4.31875 4.57972 4.60264 4.74617 4.79202 4.88094 4.92557 4.97105 5.05118 5.12598 5.17299 5.19689 5.23735 5.33092 5.43783 5.45886 5.53855 5.63408 5.74668 5.79119 5.82285 5.92189 6.01517 6.08347 6.16640 6.21929 6.27830 6.39226 6.75857 6.78127 7.03921 7.09617 7.20290 7.37141 8.12294 8.50416 8.73990 8.90516 9.37379 10.89457 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.003021 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.455873 B = 9265.171614 C =10737.762671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.536 3.464 12 O -0.555 6.555 13 C -0.157 4.157 14 C -0.071 4.071 15 C 0.064 3.936 16 O -0.382 6.382 17 C 0.102 3.898 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.148 4.148 25 C -0.153 4.153 26 H 0.268 0.732 27 H 0.024 0.976 28 H 0.021 0.979 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.195 -16.714 -9.611 23.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.320 3.680 12 O -0.435 6.435 13 C -0.160 4.160 14 C -0.109 4.109 15 C -0.013 4.013 16 O -0.302 6.302 17 C 0.026 3.974 18 C -0.087 4.087 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.135 4.135 22 C -0.144 4.144 23 C -0.118 4.118 24 C -0.185 4.185 25 C -0.191 4.191 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.232 0.768 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.439 -16.058 -9.633 23.646 hybrid contribution 0.056 0.823 -0.078 0.829 sum 14.495 -15.235 -9.711 23.163 Atomic orbital electron populations 1.69876 1.06194 1.27428 1.49407 1.24791 0.94780 0.99125 0.93884 0.86828 0.80547 0.83315 0.79061 1.19836 1.20865 1.18576 1.21081 0.88445 0.95261 1.53293 0.90184 1.19513 0.95349 0.78611 0.96726 1.46141 1.05578 1.11022 1.71848 1.19413 0.83116 0.88483 0.77013 1.90642 1.55927 1.45872 1.51036 1.21412 1.04128 0.95035 0.95468 1.20910 1.01652 0.97829 0.90489 1.22476 0.99527 0.92535 0.86737 1.87904 1.74773 1.48649 1.18861 1.21289 0.96966 0.95658 0.83529 1.19652 0.95986 0.96479 0.96628 1.21154 0.96078 0.99300 0.95018 1.21179 0.99745 0.94651 0.98572 1.21199 0.94960 0.97955 0.99411 1.21138 0.97782 0.99134 0.96327 1.21071 0.99461 0.93542 0.97729 1.22982 0.89975 1.03369 1.02180 1.23074 1.01163 1.01366 0.93465 0.92243 0.95796 0.96128 0.76823 0.90061 0.90205 0.92934 0.92816 0.92490 0.92230 0.85678 0.85840 0.86084 0.85997 0.85987 0.88197 0.87871 0.88126 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.44 4.50 -5.19 -0.02 5.41 16 10 N -0.70 -14.33 5.55 -61.47 -0.34 -14.67 16 11 C 0.54 10.28 6.57 -10.98 -0.07 10.21 16 12 O -0.56 -12.66 16.70 5.56 0.09 -12.57 16 13 C -0.16 -2.22 1.90 -155.66 -0.30 -2.51 16 14 C -0.07 -0.90 5.46 -26.73 -0.15 -1.05 16 15 C 0.06 0.85 5.74 37.16 0.21 1.06 16 16 O -0.38 -5.14 10.33 -35.23 -0.36 -5.50 16 17 C 0.10 1.16 6.06 36.00 0.22 1.37 16 18 C -0.09 -0.97 5.51 -104.63 -0.58 -1.54 16 19 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 20 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 24 C -0.15 -1.79 9.78 -26.70 -0.26 -2.05 16 25 C -0.15 -1.80 9.93 -26.70 -0.27 -2.06 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 28 H 0.02 0.53 7.57 -51.92 -0.39 0.14 16 29 H 0.40 7.36 8.33 -40.82 -0.34 7.02 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 32 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.05 0.82 7.87 -51.93 -0.41 0.41 16 34 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 1.39 7.99 -51.93 -0.42 0.97 16 43 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 44 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.68 375.41 -9.45 -42.13 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.00 Total: 5.41 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.61 Total: -11.52 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.43 Total: -40.40 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.27 Total: -18.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.68 -9.45 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427637505.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.030 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds