Wall clock time and date at job start Tue Mar 31 2020 08:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47091 * 299.99520 * 3 2 1 6 6 H 1.48497 * 109.47138 * 60.00347 * 3 2 1 7 7 C 1.37882 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99751 * 175.14335 * 7 2 1 9 9 C 1.50694 * 120.00284 * 355.42076 * 7 2 1 10 10 C 1.53006 * 115.55031 * 274.93190 * 9 7 2 11 11 N 1.46499 * 109.46602 * 294.81113 * 10 9 7 12 12 C 1.34782 * 119.99602 * 184.79227 * 11 10 9 13 13 O 1.21273 * 120.00176 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99710 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47261 * 180.02562 * 14 12 11 16 16 O 1.42896 * 109.47483 * 179.97438 * 15 14 12 17 17 C 1.42899 * 113.99865 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46815 * 180.02562 * 17 16 15 19 19 C 1.38236 * 119.99809 * 269.72442 * 18 17 16 20 20 C 1.38238 * 120.00156 * 179.76428 * 19 18 17 21 21 C 1.38238 * 119.99691 * 0.51127 * 20 19 18 22 22 C 1.38234 * 119.99952 * 359.74882 * 21 20 19 23 23 C 1.38232 * 120.00193 * 359.97438 * 22 21 20 24 24 C 1.53003 * 117.49968 * 129.25877 * 9 7 2 25 25 C 1.52998 * 117.49915 * 60.59573 * 9 7 2 26 26 H 0.97004 * 120.00506 * 5.00201 * 1 2 3 27 27 H 1.08993 * 109.46787 * 54.81179 * 10 9 7 28 28 H 1.09000 * 109.46942 * 174.81567 * 10 9 7 29 29 H 0.97004 * 120.00630 * 4.79957 * 11 10 9 30 30 H 1.09003 * 109.47069 * 300.00128 * 14 12 11 31 31 H 1.08998 * 109.47269 * 59.99690 * 14 12 11 32 32 H 1.09003 * 109.46759 * 299.99798 * 15 14 12 33 33 H 1.09002 * 109.47303 * 59.99758 * 15 14 12 34 34 H 1.09001 * 109.47360 * 299.99816 * 17 16 15 35 35 H 1.08996 * 109.47064 * 60.00192 * 17 16 15 36 36 H 1.08005 * 120.00008 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.99944 * 180.22877 * 20 19 18 38 38 H 1.08001 * 119.99623 * 179.71807 * 21 20 19 39 39 H 1.08005 * 119.99738 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00258 * 179.97438 * 23 22 21 41 41 H 1.08997 * 117.49622 * 359.97438 * 24 9 7 42 42 H 1.09000 * 117.49928 * 145.02150 * 24 9 7 43 43 H 1.08996 * 117.50254 * 214.97905 * 25 9 7 44 44 H 1.09005 * 117.49689 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0817 -1.1958 -0.0787 9 6 1.2547 -2.4970 0.1053 10 6 0.9188 -2.9527 1.5268 11 7 2.1580 -3.2463 2.2510 12 6 2.1053 -3.7589 3.4964 13 8 1.0322 -3.9774 4.0174 14 6 3.3800 -4.0604 4.2416 15 6 3.0420 -4.6298 5.6209 16 8 4.2506 -4.9162 6.3273 17 6 4.0458 -5.4550 7.6349 18 6 5.3800 -5.7171 8.2848 19 6 5.9936 -6.9464 8.1320 20 6 7.2197 -7.1852 8.7241 21 6 7.8273 -6.1983 9.4776 22 6 7.2112 -4.9709 9.6348 23 6 5.9878 -4.7301 9.0380 24 6 1.5731 -3.5804 -0.9271 25 6 0.2453 -2.8219 -0.9976 26 1 -0.4851 0.8368 -0.0732 27 1 0.3750 -2.1615 2.0429 28 1 0.3014 -3.8500 1.4844 29 1 3.0164 -3.0718 1.8343 30 1 3.9647 -4.7898 3.6811 31 1 3.9582 -3.1438 4.3583 32 1 2.4571 -3.9006 6.1816 33 1 2.4640 -5.5465 5.5038 34 1 3.4824 -4.7425 8.2373 35 1 3.4881 -6.3885 7.5599 36 1 5.5166 -7.7191 7.5473 37 1 7.7008 -8.1443 8.6017 38 1 8.7831 -6.3865 9.9440 39 1 7.6857 -4.2000 10.2239 40 1 5.5062 -3.7713 9.1612 41 1 2.3246 -3.3505 -1.6824 42 1 1.5429 -4.6177 -0.5938 43 1 -0.6578 -3.3606 -0.7107 44 1 0.1233 -2.0929 -1.7988 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431125658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:32:58 Heat of formation + Delta-G solvation = -45.703080 kcal Electronic energy + Delta-G solvation = -23178.338243 eV Core-core repulsion = 19674.974308 eV Total energy + Delta-G solvation = -3503.363935 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65240 -39.20621 -37.67131 -36.67432 -33.32760 -32.68231 -31.98402 -31.16790 -30.93240 -26.76790 -26.00848 -25.22238 -23.01188 -22.84814 -21.58134 -21.16642 -19.74873 -19.22483 -17.34775 -16.98355 -16.41775 -16.32590 -15.70038 -15.57427 -15.33606 -14.95137 -14.70354 -14.41201 -14.11542 -13.75534 -13.66060 -13.19736 -12.95526 -12.75740 -12.62131 -12.55294 -11.86202 -11.62648 -11.40815 -11.37011 -11.17130 -11.12880 -11.02083 -10.96147 -10.53465 -10.25767 -9.70019 -9.65025 -9.35331 -9.18374 -9.09953 -9.05966 -8.52128 -8.30034 -8.12190 -6.09878 -4.19809 0.99617 1.13896 3.13965 3.21030 3.23433 3.32766 3.34638 3.66664 4.18545 4.33622 4.55466 4.62744 4.74753 4.85139 4.99989 5.00553 5.13182 5.16459 5.17936 5.26233 5.31193 5.38886 5.44816 5.67431 5.70110 5.77058 5.85799 5.91112 6.01721 6.17264 6.22883 6.31786 6.33996 6.45140 6.53810 6.68780 6.70998 6.84536 7.07232 7.10097 7.23679 7.37109 7.51156 7.79093 8.23759 8.31505 8.79603 8.83330 9.47627 10.97300 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.002320 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.140051 B =12066.746680 C =12767.318950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.023 3.977 10 C 0.162 3.838 11 N -0.701 5.701 12 C 0.508 3.492 13 O -0.562 6.562 14 C -0.139 4.139 15 C 0.079 3.921 16 O -0.385 6.385 17 C 0.103 3.897 18 C -0.088 4.088 19 C -0.099 4.099 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.099 4.099 24 C -0.211 4.211 25 C -0.142 4.142 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.403 0.597 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.072 -11.674 15.755 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.022 3.978 10 C 0.039 3.961 11 N -0.350 5.350 12 C 0.293 3.707 13 O -0.442 6.442 14 C -0.179 4.179 15 C 0.002 3.998 16 O -0.305 6.305 17 C 0.027 3.973 18 C -0.088 4.088 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.117 4.117 24 C -0.248 4.248 25 C -0.180 4.180 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.237 0.763 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.298 -11.649 16.084 22.848 hybrid contribution 0.547 1.067 -0.239 1.223 sum 11.845 -10.582 15.845 22.435 Atomic orbital electron populations 1.69998 1.05897 1.26796 1.48382 1.25002 0.94835 0.99028 0.94311 0.86568 0.80191 0.83785 0.77650 1.19660 1.21026 1.20937 1.20394 0.92682 0.88542 1.52103 0.92099 1.19058 0.99446 0.93375 0.85931 1.21014 0.84099 0.97950 0.92993 1.45981 1.11454 1.62509 1.15009 1.20257 0.90336 0.77903 0.82202 1.90661 1.31161 1.54375 1.68006 1.21461 0.97261 1.03788 0.95422 1.22150 0.85847 1.00016 0.91751 1.87884 1.30935 1.84089 1.27592 1.21274 0.93532 0.98292 0.84206 1.19661 0.96478 0.94367 0.98278 1.21102 0.95249 0.96751 0.98613 1.21156 0.95561 0.99447 0.98101 1.21201 0.99822 0.93706 0.98786 1.21162 0.95551 0.97314 1.00211 1.21112 0.95306 0.98580 0.96675 1.23020 1.00714 0.95563 1.05489 1.22470 0.90789 1.01323 1.03466 0.92904 0.91418 0.94137 0.76315 0.88428 0.88223 0.92325 0.92427 0.92315 0.92343 0.85867 0.85936 0.86079 0.85919 0.85828 0.90361 0.91723 0.91826 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.13 12.65 55.43 0.70 -23.42 16 2 C 0.07 1.90 5.43 -17.82 -0.10 1.81 16 3 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.50 -12.72 8.59 -34.44 -0.30 -13.02 16 8 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 9 C 0.02 0.53 1.47 -155.66 -0.23 0.30 16 10 C 0.16 3.64 5.50 -4.04 -0.02 3.61 16 11 N -0.70 -13.26 5.48 -60.29 -0.33 -13.59 16 12 C 0.51 9.12 7.83 -10.98 -0.09 9.04 16 13 O -0.56 -12.02 15.98 5.56 0.09 -11.93 16 14 C -0.14 -1.90 6.07 -27.88 -0.17 -2.06 16 15 C 0.08 1.05 5.23 37.16 0.19 1.24 16 16 O -0.39 -4.94 10.33 -35.23 -0.36 -5.31 16 17 C 0.10 1.07 6.06 36.01 0.22 1.29 16 18 C -0.09 -0.90 5.51 -104.62 -0.58 -1.47 16 19 C -0.10 -0.92 9.70 -39.58 -0.38 -1.31 16 20 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 21 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 22 C -0.12 -1.04 10.05 -39.59 -0.40 -1.43 16 23 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 24 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 25 C -0.14 -3.25 9.14 -26.69 -0.24 -3.49 16 26 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 27 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 29 H 0.40 6.94 8.33 -40.82 -0.34 6.60 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 33 H 0.06 0.77 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -30.16 377.85 -9.83 -39.99 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.06 Total: 7.33 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -3.53 Total: -14.18 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.37 Total: -37.02 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.27 Total: -17.24 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.16 -9.83 -39.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431125658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.714 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds