Wall clock time and date at job start Tue Mar 31 2020 08:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00428 * 2 1 4 4 H 1.48506 * 109.47055 * 270.00118 * 3 2 1 5 5 H 1.48493 * 109.47136 * 29.99992 * 3 2 1 6 6 H 1.48498 * 109.47422 * 150.00360 * 3 2 1 7 7 C 1.37880 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00134 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47006 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.47216 * 304.99910 * 10 9 7 12 12 N 1.46498 * 109.47065 * 64.99799 * 10 9 7 13 13 C 1.34777 * 119.99828 * 204.72115 * 12 10 9 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 10 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 10 16 16 C 1.52990 * 109.47398 * 180.02562 * 15 13 12 17 17 H 1.08998 * 110.81051 * 308.63400 * 16 15 13 18 18 C 1.54811 * 110.90785 * 184.99910 * 16 15 13 19 19 C 1.54104 * 104.19027 * 220.92299 * 18 16 15 20 20 O 1.43750 * 107.29399 * 357.97053 * 19 18 16 21 21 C 1.44389 * 106.97161 * 26.51141 * 20 19 18 22 22 C 1.50705 * 109.46894 * 185.00011 * 10 9 7 23 23 C 1.38236 * 119.99603 * 279.72342 * 22 10 9 24 24 C 1.38241 * 119.99323 * 179.76823 * 23 22 10 25 25 C 1.38235 * 120.00214 * 0.50718 * 24 23 22 26 26 C 1.38237 * 119.99790 * 359.74821 * 25 24 23 27 27 C 1.38233 * 119.99669 * 99.99812 * 22 10 9 28 28 H 0.97001 * 119.99519 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47006 * 60.00245 * 9 7 2 30 30 H 1.08998 * 109.46979 * 299.99836 * 9 7 2 31 31 H 0.97001 * 120.00384 * 25.00562 * 12 10 9 32 32 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 33 33 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 34 34 H 1.08993 * 110.48651 * 339.59933 * 18 16 15 35 35 H 1.09003 * 110.48846 * 102.25162 * 18 16 15 36 36 H 1.08998 * 109.88177 * 117.39114 * 19 18 16 37 37 H 1.09002 * 109.87946 * 238.55060 * 19 18 16 38 38 H 1.09003 * 110.61520 * 201.43508 * 21 20 19 39 39 H 1.09005 * 110.61441 * 78.44212 * 21 20 19 40 40 H 1.07997 * 120.00182 * 0.02562 * 23 22 10 41 41 H 1.07997 * 119.99645 * 180.23386 * 24 23 22 42 42 H 1.07993 * 120.00221 * 179.72253 * 25 24 23 43 43 H 1.07998 * 119.99755 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.00444 * 0.02562 * 27 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 1 3.5871 -3.1763 0.8393 12 7 3.6333 -3.2908 -1.2543 13 6 3.5118 -4.6322 -1.3044 14 8 3.7189 -5.2973 -0.3116 15 6 3.1186 -5.3057 -2.5939 16 6 3.0521 -6.8190 -2.3794 17 1 3.9690 -7.1853 -1.9176 18 6 2.7731 -7.5543 -3.7128 19 6 1.7679 -8.6586 -3.3321 20 8 1.5547 -8.5717 -1.9132 21 6 1.8131 -7.2034 -1.5311 22 6 5.5234 -2.6387 0.1210 23 6 6.3085 -2.4024 -0.9920 24 6 7.6862 -2.3994 -0.8779 25 6 8.2789 -2.6431 0.3469 26 6 7.4938 -2.8846 1.4588 27 6 6.1160 -2.8823 1.3458 28 1 -0.4849 0.8401 -0.0004 29 1 3.8752 -0.6806 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.4677 -2.7590 -2.0484 32 1 2.1418 -4.9407 -2.9113 33 1 3.8581 -5.0794 -3.3622 34 1 2.3330 -6.8719 -4.4399 35 1 3.6904 -7.9927 -4.1060 36 1 0.8266 -8.5005 -3.8586 37 1 2.1774 -9.6362 -3.5861 38 1 2.0411 -7.1386 -0.4672 39 1 0.9638 -6.5679 -1.7822 40 1 5.8455 -2.2160 -1.9497 41 1 8.2995 -2.2111 -1.7467 42 1 9.3552 -2.6452 0.4351 43 1 7.9568 -3.0754 2.4156 44 1 5.5027 -3.0717 2.2144 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439679949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:51 Heat of formation + Delta-G solvation = -72.857463 kcal Electronic energy + Delta-G solvation = -24764.364139 eV Core-core repulsion = 21259.822702 eV Total energy + Delta-G solvation = -3504.541438 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02064 -39.23943 -38.28230 -35.35988 -33.43548 -32.69336 -31.32110 -30.58983 -29.83559 -29.32549 -26.96623 -24.86331 -22.72585 -22.36230 -21.80430 -21.03395 -19.97108 -19.71581 -17.28780 -16.99554 -16.44078 -16.06382 -15.86798 -15.47170 -15.20683 -14.95469 -14.44308 -14.35851 -14.05512 -13.58566 -13.28965 -13.14213 -13.05602 -12.63457 -12.60766 -12.42355 -12.06395 -11.91213 -11.63613 -11.37944 -11.31234 -11.09591 -10.82717 -10.78787 -10.65041 -10.52504 -10.26704 -9.91210 -9.65033 -9.43840 -9.31263 -8.67522 -8.63999 -8.51192 -8.32986 -6.14799 -4.14747 1.64784 1.67606 3.08292 3.21727 3.31537 3.34435 3.61472 4.00266 4.12491 4.34779 4.49662 4.73815 4.85748 5.03824 5.08162 5.15306 5.15740 5.19524 5.25169 5.31380 5.41110 5.46351 5.60789 5.63441 5.66561 5.75396 5.78256 5.80622 5.86992 6.02172 6.11246 6.20664 6.24706 6.28104 6.39388 6.70484 6.73399 6.78651 6.88694 6.89370 7.02235 7.27238 7.31481 7.61442 8.05691 8.40074 8.71853 8.90640 9.46086 10.97917 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.004960 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.418047 B = 5643.799606 C = 7791.487296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.194 3.806 11 H 0.092 0.908 12 N -0.701 5.701 13 C 0.511 3.489 14 O -0.547 6.547 15 C -0.133 4.133 16 C -0.102 4.102 17 H 0.093 0.907 18 C -0.154 4.154 19 C 0.046 3.954 20 O -0.382 6.382 21 C 0.053 3.947 22 C -0.076 4.076 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.122 4.122 27 C -0.107 4.107 28 H 0.264 0.736 29 H 0.033 0.967 30 H 0.018 0.982 31 H 0.401 0.599 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 -9.419 -7.461 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.051 4.051 10 C 0.090 3.910 11 H 0.110 0.890 12 N -0.350 5.350 13 C 0.297 3.703 14 O -0.426 6.426 15 C -0.173 4.173 16 C -0.121 4.121 17 H 0.111 0.889 18 C -0.192 4.192 19 C -0.031 4.031 20 O -0.301 6.301 21 C -0.023 4.023 22 C -0.077 4.077 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.035 -9.935 -6.604 16.251 hybrid contribution 0.349 1.554 -0.628 1.712 sum 11.384 -8.381 -7.232 15.879 Atomic orbital electron populations 1.69904 1.06264 1.26984 1.50411 1.24983 0.94679 0.98982 0.94431 0.86857 0.80483 0.83890 0.78559 1.20276 1.21296 1.18947 1.21005 0.88649 0.94662 1.51557 0.90620 1.19872 0.97822 0.89851 0.97576 1.19953 0.87527 0.96368 0.87189 0.89005 1.45917 1.68822 1.06265 1.14026 1.20485 0.76988 0.82621 0.90216 1.90660 1.50853 1.64151 1.36896 1.21661 1.04004 0.94954 0.96716 1.22442 1.00783 0.93680 0.95214 0.88854 1.23028 1.00116 0.98037 0.97999 1.23115 0.97865 0.99157 0.82936 1.88873 1.90655 1.28579 1.21961 1.23710 0.95277 0.82207 1.01130 1.20581 0.96955 0.96745 0.93405 1.20922 0.93357 1.00132 0.98440 1.21053 0.94831 1.01057 0.97395 1.21020 0.99262 1.01684 0.93216 1.21070 0.93850 1.00713 0.98373 1.21050 0.94644 0.99384 0.97493 0.92611 0.94864 0.96352 0.76471 0.88515 0.88866 0.90425 0.90515 0.92579 0.90239 0.87791 0.92201 0.86527 0.86683 0.86759 0.86496 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.96 55.43 0.77 -25.63 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 3 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 7 C -0.52 -13.67 9.39 -34.44 -0.32 -13.99 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.30 3.56 -27.88 -0.10 -0.40 16 10 C 0.19 3.72 2.12 -69.08 -0.15 3.57 16 11 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 12 N -0.70 -11.79 4.02 -54.93 -0.22 -12.01 16 13 C 0.51 8.37 7.63 -10.98 -0.08 8.29 16 14 O -0.55 -10.76 14.59 5.55 0.08 -10.68 16 15 C -0.13 -1.60 5.10 -27.89 -0.14 -1.75 16 16 C -0.10 -1.25 2.67 -88.62 -0.24 -1.49 16 17 H 0.09 1.28 7.87 -51.93 -0.41 0.87 16 18 C -0.15 -1.46 6.60 -25.20 -0.17 -1.63 16 19 C 0.05 0.49 7.70 37.73 0.29 0.78 16 20 O -0.38 -5.51 11.52 -35.23 -0.41 -5.92 16 21 C 0.05 0.75 6.66 38.21 0.25 1.01 16 22 C -0.08 -1.30 4.91 -104.62 -0.51 -1.82 16 23 C -0.11 -1.69 9.33 -39.58 -0.37 -2.06 16 24 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 25 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 26 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 27 C -0.11 -1.75 9.67 -39.58 -0.38 -2.13 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 30 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 31 H 0.40 6.06 8.60 -40.82 -0.35 5.71 16 32 H 0.10 1.09 7.98 -51.93 -0.41 0.67 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.63 7.86 -51.93 -0.41 0.23 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.66 7.48 -51.93 -0.39 1.27 16 39 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 40 H 0.12 1.63 7.71 -52.49 -0.40 1.22 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 361.97 15.07 5.45 5.45 Total: -1.00 -31.74 361.97 -9.10 -40.85 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.91 Total: 8.17 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.21 Total: -16.14 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.55 Total: -37.64 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.32 Total: -16.59 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.74 -9.10 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439679949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.012 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds