Wall clock time and date at job start Tue Mar 31 2020 08:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47302 * 274.78084 * 3 2 1 5 5 H 1.48500 * 109.46968 * 34.77972 * 3 2 1 6 6 H 1.48498 * 109.46914 * 154.77730 * 3 2 1 7 7 C 1.39945 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99438 * 159.60129 * 7 2 1 9 9 C 1.41395 * 119.99724 * 339.59615 * 7 2 1 10 10 C 1.40715 * 120.24006 * 158.21354 * 9 7 2 11 11 C 1.37616 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24997 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75053 * 180.02562 * 12 11 10 14 14 N 1.46898 * 109.47404 * 84.27636 * 13 12 11 15 15 C 1.47137 * 111.00229 * 65.43205 * 14 13 12 16 16 C 1.53092 * 109.19566 * 181.39263 * 15 14 13 17 17 O 1.43019 * 109.39422 * 302.64550 * 16 15 14 18 18 C 1.43140 * 113.65273 * 59.13754 * 17 16 15 19 19 C 1.46334 * 111.00224 * 189.15539 * 14 13 12 20 20 C 1.54304 * 110.09519 * 301.11838 * 19 14 13 21 21 C 1.55101 * 101.96504 * 98.23754 * 20 19 14 22 22 O 1.44427 * 103.55761 * 36.60780 * 21 20 19 23 23 C 1.43903 * 106.99665 * 320.26394 * 22 21 20 24 24 C 1.38639 * 120.49844 * 0.29266 * 12 11 10 25 25 C 1.37621 * 120.24655 * 359.45761 * 24 12 11 26 26 H 0.96998 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12617 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.87312 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.46979 * 324.27528 * 13 12 11 30 30 H 1.09006 * 109.47060 * 204.27362 * 13 12 11 31 31 H 1.09006 * 109.51401 * 61.47955 * 15 14 13 32 32 H 1.09000 * 109.51973 * 301.31307 * 15 14 13 33 33 H 1.08998 * 109.48516 * 182.66404 * 16 15 14 34 34 H 1.09007 * 109.48338 * 62.61472 * 16 15 14 35 35 H 1.09005 * 109.49442 * 62.33638 * 18 17 16 36 36 H 1.09004 * 109.49921 * 182.43228 * 18 17 16 37 37 H 1.09001 * 110.93292 * 216.41227 * 20 19 14 38 38 H 1.09007 * 110.93216 * 340.07030 * 20 19 14 39 39 H 1.08993 * 110.60871 * 278.08123 * 21 20 19 40 40 H 1.09005 * 110.60372 * 155.12361 * 21 20 19 41 41 H 1.08991 * 109.91095 * 267.00097 * 23 22 21 42 42 H 1.09001 * 110.06253 * 145.82270 * 23 22 21 43 43 H 1.07997 * 119.87327 * 179.70147 * 24 12 11 44 44 H 1.07997 * 120.12362 * 180.26913 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3887 2.1049 -1.3951 5 1 1.4938 2.6214 0.7986 6 1 3.5866 1.4132 0.5966 7 6 2.0081 -1.2119 0.0005 8 1 3.0372 -1.2413 -0.3254 9 6 1.3676 -2.3978 0.4280 10 6 1.8573 -3.6533 0.0229 11 6 1.2258 -4.8010 0.4445 12 6 0.1115 -4.7235 1.2657 13 6 -0.5710 -5.9875 1.7212 14 7 0.1146 -6.5135 2.9091 15 6 -0.0259 -5.5944 4.0494 16 6 0.7312 -6.1645 5.2517 17 8 0.2277 -7.4682 5.5553 18 6 0.3495 -8.3972 4.4731 19 6 -0.3797 -7.8474 3.2523 20 6 -1.8982 -7.7970 3.5215 21 6 -2.4811 -8.2749 2.1660 22 8 -1.5428 -9.2827 1.7304 23 6 -0.2268 -8.8024 2.0595 24 6 -0.3830 -3.4919 1.6665 25 6 0.2357 -2.3313 1.2612 26 1 -0.4850 0.8400 -0.0004 27 1 2.7250 -3.7159 -0.6172 28 1 1.6001 -5.7656 0.1352 29 1 -0.5342 -6.7283 0.9226 30 1 -1.6104 -5.7705 1.9680 31 1 -1.0807 -5.4855 4.3015 32 1 0.3887 -4.6213 3.7860 33 1 0.5911 -5.5110 6.1128 34 1 1.7931 -6.2311 5.0145 35 1 1.4032 -8.5406 4.2336 36 1 -0.0918 -9.3514 4.7613 37 1 -2.1739 -8.4787 4.3262 38 1 -2.2202 -6.7803 3.7471 39 1 -2.5185 -7.4516 1.4529 40 1 -3.4717 -8.7079 2.3058 41 1 0.1971 -8.2690 1.2088 42 1 0.4185 -9.6374 2.3328 43 1 -1.2545 -3.4432 2.3024 44 1 -0.1486 -1.3731 1.5781 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441363586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:13 Heat of formation + Delta-G solvation = -55.847893 kcal Electronic energy + Delta-G solvation = -25659.172390 eV Core-core repulsion = 22155.368543 eV Total energy + Delta-G solvation = -3503.803847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01146 -38.00078 -37.67979 -35.46598 -33.70826 -32.08193 -30.57159 -29.94254 -29.32818 -28.20488 -26.31380 -25.55027 -23.29527 -22.78641 -22.16711 -20.96136 -19.94138 -18.88469 -17.34900 -17.17130 -16.68870 -15.87022 -15.75504 -15.30556 -15.15955 -14.69638 -14.34591 -14.23495 -13.81572 -13.69790 -13.49340 -13.26095 -12.74212 -12.57527 -12.23554 -11.97816 -11.72618 -11.68242 -11.59048 -11.42236 -11.15487 -11.04821 -10.95919 -10.88074 -10.61444 -10.57465 -10.40031 -9.82830 -9.51421 -9.50463 -9.41119 -9.10890 -8.10695 -7.48526 -7.35990 -6.83800 -4.38607 2.67826 3.02747 3.04553 3.06631 3.14156 3.74141 3.87307 3.88454 4.03364 4.47536 4.56043 4.72396 4.79183 5.03063 5.06788 5.14466 5.30178 5.33434 5.49984 5.58277 5.60014 5.64315 5.66386 5.69362 5.78506 5.80488 5.85085 5.89934 6.09767 6.14965 6.25660 6.34274 6.36999 6.69726 6.90787 7.01526 7.08157 7.14852 7.28809 7.32557 7.35143 7.57100 7.84788 8.01272 8.10187 8.25958 8.59402 8.85126 8.93745 10.10107 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.003608 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.211339 B = 7759.154678 C = 8172.305647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.113 3.887 10 C -0.231 4.231 11 C -0.065 4.065 12 C -0.215 4.215 13 C 0.114 3.886 14 N -0.513 5.513 15 C 0.020 3.980 16 C 0.062 3.938 17 O -0.385 6.385 18 C 0.083 3.917 19 C 0.043 3.957 20 C -0.177 4.177 21 C 0.042 3.958 22 O -0.378 6.378 23 C 0.056 3.944 24 C -0.092 4.092 25 C -0.171 4.171 26 H 0.281 0.719 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.039 0.961 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -11.169 7.396 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.111 3.889 10 C -0.250 4.250 11 C -0.083 4.083 12 C -0.216 4.216 13 C -0.012 4.012 14 N -0.237 5.237 15 C -0.107 4.107 16 C -0.015 4.015 17 O -0.304 6.304 18 C 0.005 3.995 19 C -0.048 4.048 20 C -0.216 4.216 21 C -0.034 4.034 22 O -0.297 6.297 23 C -0.021 4.021 24 C -0.111 4.111 25 C -0.190 4.190 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.227 -11.300 7.343 13.659 hybrid contribution -0.426 1.275 -0.082 1.347 sum -2.653 -10.025 7.262 12.660 Atomic orbital electron populations 1.69845 1.07695 1.29291 1.34447 1.25930 0.94648 1.01403 0.92082 0.86356 0.80918 0.80716 0.79119 1.19531 1.19988 1.18337 1.19623 0.99178 0.91700 1.38504 0.90422 1.17612 0.90934 0.91953 0.88451 1.20936 1.03939 0.92740 1.07432 1.20285 0.94849 0.96261 0.96953 1.18762 1.01927 0.91984 1.08969 1.20947 0.94022 0.95437 0.90755 1.62368 1.56340 1.00152 1.04868 1.22809 0.99219 0.98203 0.90512 1.22715 0.97807 0.83678 0.97277 1.87981 1.83703 1.21311 1.37358 1.22525 0.99602 0.92079 0.85259 1.22653 0.93418 0.92429 0.96316 1.23664 0.96400 1.03028 0.98485 1.23717 0.93573 0.91788 0.94357 1.88879 1.15720 1.42443 1.82681 1.23173 0.85604 0.96913 0.96428 1.20495 0.98219 0.92803 0.99623 1.21287 0.99514 0.96822 1.01379 0.90836 0.89161 0.89609 0.91222 0.95370 0.94302 0.88069 0.88654 0.92188 0.92219 0.88622 0.90097 0.89936 0.91550 0.89239 0.90418 0.89465 0.90094 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.93 10.94 55.55 0.61 -19.32 16 2 C 0.08 1.91 5.11 -17.34 -0.09 1.83 16 3 Si 0.90 18.24 29.61 -169.99 -5.03 13.21 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -12.02 9.05 -37.74 -0.34 -12.36 16 8 H 0.08 1.96 7.92 -52.49 -0.42 1.54 16 9 C 0.11 2.95 5.60 -106.83 -0.60 2.35 16 10 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C -0.06 -1.41 9.69 -39.66 -0.38 -1.79 16 12 C -0.21 -4.42 4.71 -104.33 -0.49 -4.92 16 13 C 0.11 1.91 3.27 -4.98 -0.02 1.90 16 14 N -0.51 -7.76 4.51 -219.75 -0.99 -8.75 16 15 C 0.02 0.30 5.04 -3.65 -0.02 0.28 16 16 C 0.06 0.80 6.98 37.21 0.26 1.06 16 17 O -0.39 -5.14 10.66 -35.23 -0.38 -5.51 16 18 C 0.08 0.98 5.36 36.88 0.20 1.18 16 19 C 0.04 0.55 0.71 -131.21 -0.09 0.46 16 20 C -0.18 -2.15 5.31 -24.94 -0.13 -2.28 16 21 C 0.04 0.51 7.19 38.27 0.28 0.79 16 22 O -0.38 -5.17 11.53 -35.23 -0.41 -5.57 16 23 C 0.06 0.71 6.55 37.45 0.25 0.95 16 24 C -0.09 -2.05 8.33 -39.66 -0.33 -2.38 16 25 C -0.17 -4.28 8.73 -38.87 -0.34 -4.62 16 26 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.07 1.16 5.46 -51.93 -0.28 0.87 16 30 H 0.03 0.47 6.06 -51.93 -0.31 0.15 16 31 H 0.04 0.57 6.33 -51.93 -0.33 0.24 16 32 H 0.10 1.71 6.37 -51.93 -0.33 1.38 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 38 H 0.08 1.07 5.52 -51.93 -0.29 0.79 16 39 H 0.07 0.86 6.02 -51.93 -0.31 0.54 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.08 6.12 -51.93 -0.32 0.76 16 42 H 0.09 0.94 7.68 -51.93 -0.40 0.54 16 43 H 0.08 1.64 8.05 -52.49 -0.42 1.22 16 44 H 0.12 3.05 6.06 -52.49 -0.32 2.74 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -26.96 334.39 -9.62 -36.57 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.22 Total: 7.84 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -2.24 Total: -23.51 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: -0.38 Total: -28.07 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.78 Total: -11.09 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.96 -9.62 -36.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441363586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.275 kcal (2) G-P(sol) polarization free energy of solvation -26.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds