Wall clock time and date at job start Tue Mar 31 2020 08:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48495 * 109.47302 * 274.78084 * 3 2 1 5 5 H 1.48500 * 109.46968 * 34.77972 * 3 2 1 6 6 H 1.48498 * 109.46914 * 154.77730 * 3 2 1 7 7 C 1.39945 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99438 * 159.60129 * 7 2 1 9 9 C 1.41395 * 119.99724 * 339.59615 * 7 2 1 10 10 C 1.40715 * 120.24006 * 158.21354 * 9 7 2 11 11 C 1.37616 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.24997 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.75053 * 180.02562 * 12 11 10 14 14 N 1.46898 * 109.47404 * 84.27636 * 13 12 11 15 15 C 1.47137 * 111.00229 * 65.43205 * 14 13 12 16 16 C 1.53092 * 109.19566 * 181.39263 * 15 14 13 17 17 O 1.43019 * 109.39422 * 302.64550 * 16 15 14 18 18 C 1.43140 * 113.65273 * 59.13754 * 17 16 15 19 19 C 1.46334 * 111.00224 * 189.15539 * 14 13 12 20 20 C 1.54304 * 110.09519 * 301.11838 * 19 14 13 21 21 C 1.55101 * 101.96504 * 98.23754 * 20 19 14 22 22 O 1.44427 * 103.55761 * 36.60780 * 21 20 19 23 23 C 1.43903 * 106.99665 * 320.26394 * 22 21 20 24 24 C 1.38639 * 120.49844 * 0.29266 * 12 11 10 25 25 C 1.37621 * 120.24655 * 359.45761 * 24 12 11 26 26 H 0.96998 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.12617 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.87312 * 180.02562 * 11 10 9 29 29 H 1.09000 * 109.46979 * 324.27528 * 13 12 11 30 30 H 1.09006 * 109.47060 * 204.27362 * 13 12 11 31 31 H 1.09006 * 109.51401 * 61.47955 * 15 14 13 32 32 H 1.09000 * 109.51973 * 301.31307 * 15 14 13 33 33 H 1.08998 * 109.48516 * 182.66404 * 16 15 14 34 34 H 1.09007 * 109.48338 * 62.61472 * 16 15 14 35 35 H 1.09005 * 109.49442 * 62.33638 * 18 17 16 36 36 H 1.09004 * 109.49921 * 182.43228 * 18 17 16 37 37 H 1.09001 * 110.93292 * 216.41227 * 20 19 14 38 38 H 1.09007 * 110.93216 * 340.07030 * 20 19 14 39 39 H 1.08993 * 110.60871 * 278.08123 * 21 20 19 40 40 H 1.09005 * 110.60372 * 155.12361 * 21 20 19 41 41 H 1.08991 * 109.91095 * 267.00097 * 23 22 21 42 42 H 1.09001 * 110.06253 * 145.82270 * 23 22 21 43 43 H 1.07997 * 119.87327 * 179.70147 * 24 12 11 44 44 H 1.07997 * 120.12362 * 180.26913 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3887 2.1049 -1.3951 5 1 1.4938 2.6214 0.7986 6 1 3.5866 1.4132 0.5966 7 6 2.0081 -1.2119 0.0005 8 1 3.0372 -1.2413 -0.3254 9 6 1.3676 -2.3978 0.4280 10 6 1.8573 -3.6533 0.0229 11 6 1.2258 -4.8010 0.4445 12 6 0.1115 -4.7235 1.2657 13 6 -0.5710 -5.9875 1.7212 14 7 0.1146 -6.5135 2.9091 15 6 -0.0259 -5.5944 4.0494 16 6 0.7312 -6.1645 5.2517 17 8 0.2277 -7.4682 5.5553 18 6 0.3495 -8.3972 4.4731 19 6 -0.3797 -7.8474 3.2523 20 6 -1.8982 -7.7970 3.5215 21 6 -2.4811 -8.2749 2.1660 22 8 -1.5428 -9.2827 1.7304 23 6 -0.2268 -8.8024 2.0595 24 6 -0.3830 -3.4919 1.6665 25 6 0.2357 -2.3313 1.2612 26 1 -0.4850 0.8400 -0.0004 27 1 2.7250 -3.7159 -0.6172 28 1 1.6001 -5.7656 0.1352 29 1 -0.5342 -6.7283 0.9226 30 1 -1.6104 -5.7705 1.9680 31 1 -1.0807 -5.4855 4.3015 32 1 0.3887 -4.6213 3.7860 33 1 0.5911 -5.5110 6.1128 34 1 1.7931 -6.2311 5.0145 35 1 1.4032 -8.5406 4.2336 36 1 -0.0918 -9.3514 4.7613 37 1 -2.1739 -8.4787 4.3262 38 1 -2.2202 -6.7803 3.7471 39 1 -2.5185 -7.4516 1.4529 40 1 -3.4717 -8.7079 2.3058 41 1 0.1971 -8.2690 1.2088 42 1 0.4185 -9.6374 2.3328 43 1 -1.2545 -3.4432 2.3024 44 1 -0.1486 -1.3731 1.5781 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000441363586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:13 Heat of formation + Delta-G solvation = -72.366464 kcal Electronic energy + Delta-G solvation = -25659.888689 eV Core-core repulsion = 22155.368543 eV Total energy + Delta-G solvation = -3504.520146 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08832 -39.46038 -38.97914 -36.78845 -35.42072 -33.22790 -32.13676 -31.21214 -30.87505 -29.66241 -27.51914 -26.94395 -24.65883 -23.96518 -23.24981 -22.75459 -21.64417 -19.96947 -19.22826 -18.25939 -17.73855 -17.19625 -16.87793 -16.84400 -16.14545 -15.88617 -15.76221 -15.57844 -15.37460 -15.02489 -14.83655 -14.65222 -14.24554 -13.81342 -13.73101 -13.39378 -13.31246 -12.95482 -12.77738 -12.68272 -12.60757 -12.44779 -12.41014 -12.24005 -11.98225 -11.93488 -11.58217 -11.39830 -11.28496 -10.97514 -10.68792 -10.49550 -9.42005 -9.27641 -9.16348 -8.66830 -6.32261 0.93312 1.16851 1.37274 1.46953 1.53802 2.19544 2.56907 2.78629 2.89207 3.02034 3.49676 3.69025 3.76982 3.83381 3.93464 4.06301 4.16194 4.19133 4.26133 4.31852 4.43359 4.55712 4.57406 4.62141 4.63856 4.65805 4.71622 4.75487 4.77818 4.85040 4.92659 5.01250 5.05831 5.09450 5.15839 5.37687 5.48229 5.69045 5.70358 5.93403 5.96715 6.09450 6.10893 6.20482 6.29578 6.39983 6.70592 6.94560 7.04764 8.29732 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.003608 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.211339 B = 7759.154678 C = 8172.305647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.978 3.022 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.073 0.927 9 C 0.082 3.918 10 C -0.247 4.247 11 C -0.068 4.068 12 C -0.198 4.198 13 C 0.124 3.876 14 N -0.520 5.520 15 C 0.022 3.978 16 C 0.067 3.933 17 O -0.391 6.391 18 C 0.081 3.919 19 C 0.043 3.957 20 C -0.171 4.171 21 C 0.040 3.960 22 O -0.389 6.389 23 C 0.056 3.944 24 C -0.091 4.091 25 C -0.193 4.193 26 H 0.288 0.712 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -12.672 8.464 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.176 4.176 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.531 4.531 8 H 0.091 0.909 9 C 0.079 3.921 10 C -0.267 4.267 11 C -0.086 4.086 12 C -0.200 4.200 13 C -0.002 4.002 14 N -0.244 5.244 15 C -0.105 4.105 16 C -0.010 4.010 17 O -0.309 6.309 18 C 0.004 3.996 19 C -0.048 4.048 20 C -0.210 4.210 21 C -0.036 4.036 22 O -0.308 6.308 23 C -0.021 4.021 24 C -0.110 4.110 25 C -0.213 4.213 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.127 0.873 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.540 -12.825 8.414 15.547 hybrid contribution -0.395 1.559 -0.389 1.654 sum -2.935 -11.266 8.025 14.140 Atomic orbital electron populations 1.69887 1.09051 1.30583 1.35115 1.26731 0.95385 1.04449 0.91082 0.85259 0.79310 0.76143 0.79427 1.18709 1.18908 1.18331 1.19847 0.99370 0.93111 1.40765 0.90898 1.17935 0.91851 0.92896 0.89395 1.21121 1.04493 0.93089 1.07975 1.20563 0.94883 0.96524 0.96677 1.19154 1.00793 0.93171 1.06864 1.20786 0.93823 0.93654 0.91918 1.62248 1.56446 1.01303 1.04426 1.22759 0.99484 0.97176 0.91129 1.22699 0.97242 0.83993 0.97037 1.87982 1.83698 1.21347 1.37913 1.22686 1.00035 0.92510 0.84359 1.22734 0.94111 0.90882 0.97029 1.23622 0.95670 1.02823 0.98900 1.23792 0.94352 0.91485 0.93948 1.88878 1.16182 1.42849 1.82930 1.23210 0.85646 0.97536 0.95706 1.20681 0.98408 0.92561 0.99316 1.21246 1.00294 0.97169 1.02575 0.90095 0.88969 0.87252 0.90574 0.94878 0.94066 0.90597 0.86948 0.92443 0.91732 0.86361 0.88817 0.90805 0.92590 0.87245 0.91775 0.87304 0.88373 0.88233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.80 10.94 21.83 0.24 -42.56 16 2 C 0.04 1.97 5.11 85.26 0.44 2.40 16 3 Si 0.98 38.07 29.61 68.60 2.03 40.10 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.50 -27.29 9.05 23.46 0.21 -27.07 16 8 H 0.07 3.85 7.92 -2.91 -0.02 3.83 16 9 C 0.08 4.42 5.60 -21.29 -0.12 4.30 16 10 C -0.25 -12.21 9.80 22.73 0.22 -11.99 16 11 C -0.07 -2.94 9.69 22.22 0.22 -2.72 16 12 C -0.20 -8.06 4.71 -19.67 -0.09 -8.15 16 13 C 0.12 3.99 3.27 85.56 0.28 4.27 16 14 N -0.52 -14.76 4.51 -849.15 -3.83 -18.59 16 15 C 0.02 0.63 5.04 86.29 0.43 1.06 16 16 C 0.07 1.61 6.98 72.01 0.50 2.11 16 17 O -0.39 -9.31 10.66 -148.98 -1.59 -10.90 16 18 C 0.08 1.66 5.36 71.80 0.39 2.04 16 19 C 0.04 0.99 0.71 4.09 0.00 1.00 16 20 C -0.17 -3.69 5.31 31.76 0.17 -3.52 16 21 C 0.04 0.88 7.19 72.70 0.52 1.40 16 22 O -0.39 -9.58 11.53 -148.98 -1.72 -11.30 16 23 C 0.06 1.26 6.55 72.17 0.47 1.74 16 24 C -0.09 -4.06 8.33 22.22 0.19 -3.87 16 25 C -0.19 -10.07 8.73 22.73 0.20 -9.87 16 26 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 27 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 28 H 0.11 4.17 8.06 -2.91 -0.02 4.14 16 29 H 0.08 2.38 5.46 -2.39 -0.01 2.37 16 30 H 0.03 1.04 6.06 -2.38 -0.01 1.03 16 31 H 0.04 1.14 6.33 -2.38 -0.02 1.13 16 32 H 0.08 2.54 6.37 -2.39 -0.02 2.52 16 33 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.12 1.92 8.05 -2.38 -0.02 1.90 16 37 H 0.09 1.81 7.78 -2.39 -0.02 1.79 16 38 H 0.07 1.75 5.52 -2.38 -0.01 1.73 16 39 H 0.06 1.33 6.02 -2.39 -0.01 1.32 16 40 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 41 H 0.06 1.64 6.12 -2.39 -0.01 1.62 16 42 H 0.11 1.98 7.68 -2.39 -0.02 1.96 16 43 H 0.10 3.96 8.05 -2.91 -0.02 3.94 16 44 H 0.10 5.46 6.06 -2.91 -0.02 5.44 16 Total: -1.00 -59.09 334.39 0.17 -58.92 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 1.01 Total: 31.22 kcal Atomic # 6 Polarization: -50.91 SS G_CDS: 4.03 Total: -46.88 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: -3.59 Total: -61.15 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -3.31 Total: -22.20 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -59.09 0.17 -58.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441363586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.448 kcal (2) G-P(sol) polarization free energy of solvation -59.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds