Wall clock time and date at job start Tue Mar 31 2020 08:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99903 * 2 1 4 4 H 1.48499 * 109.47054 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47177 * 299.99940 * 3 2 1 6 6 H 1.48500 * 109.47322 * 59.99605 * 3 2 1 7 7 C 1.39946 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99479 * 197.85532 * 7 2 1 9 9 C 1.41390 * 120.00020 * 17.85670 * 7 2 1 10 10 C 1.40713 * 120.24863 * 204.38082 * 9 7 2 11 11 C 1.37616 * 119.74899 * 180.02562 * 10 9 7 12 12 C 1.38627 * 120.24692 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.74676 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47177 * 89.99883 * 13 12 11 15 15 C 1.47184 * 110.99633 * 46.22263 * 14 13 12 16 16 C 1.53115 * 109.16023 * 181.07081 * 15 14 13 17 17 O 1.43021 * 109.41400 * 302.46589 * 16 15 14 18 18 C 1.43181 * 113.62663 * 59.29653 * 17 16 15 19 19 C 1.46055 * 111.00386 * 169.99640 * 14 13 12 20 20 C 1.54070 * 110.70555 * 56.23606 * 19 14 13 21 21 C 1.54259 * 104.01082 * 262.10996 * 20 19 14 22 22 O 1.43797 * 107.40627 * 2.33482 * 21 20 19 23 23 C 1.44718 * 106.97619 * 333.92973 * 22 21 20 24 24 C 1.38632 * 120.50543 * 0.24862 * 12 11 10 25 25 C 1.37625 * 120.24409 * 359.44930 * 24 12 11 26 26 H 0.97002 * 119.99539 * 0.02562 * 1 2 3 27 27 H 1.08002 * 120.11955 * 359.97438 * 10 9 7 28 28 H 1.07997 * 119.87295 * 179.97438 * 11 10 9 29 29 H 1.08987 * 109.47355 * 329.99963 * 13 12 11 30 30 H 1.09001 * 109.47276 * 209.99491 * 13 12 11 31 31 H 1.08994 * 109.52681 * 300.97360 * 15 14 13 32 32 H 1.08999 * 109.52348 * 61.10388 * 15 14 13 33 33 H 1.09000 * 109.47399 * 62.44729 * 16 15 14 34 34 H 1.08996 * 109.48260 * 182.47680 * 16 15 14 35 35 H 1.08998 * 109.48875 * 182.79318 * 18 17 16 36 36 H 1.08999 * 109.49201 * 62.72316 * 18 17 16 37 37 H 1.08999 * 110.51712 * 143.47641 * 20 19 14 38 38 H 1.09003 * 110.51700 * 20.74636 * 20 19 14 39 39 H 1.09000 * 109.87708 * 121.83097 * 21 20 19 40 40 H 1.08998 * 109.88146 * 242.83747 * 21 20 19 41 41 H 1.09000 * 110.50914 * 280.56169 * 23 22 21 42 42 H 1.09011 * 110.64929 * 157.61207 * 23 22 21 43 43 H 1.08002 * 119.88352 * 179.70418 * 24 12 11 44 44 H 1.08003 * 120.12511 * 180.26839 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8834 2.3966 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0489 -1.2345 0.2862 9 6 1.3522 -2.4068 -0.3765 10 6 1.8258 -3.6499 0.0820 11 6 1.1799 -4.8065 -0.2908 12 6 0.0669 -4.7500 -1.1152 13 6 -0.6314 -6.0236 -1.5169 14 7 -1.6774 -6.3392 -0.5349 15 6 -2.4798 -5.1469 -0.2174 16 6 -3.5371 -5.5160 0.8267 17 8 -4.3495 -6.5807 0.3248 18 6 -3.6108 -7.7655 0.0072 19 6 -2.5284 -7.4279 -1.0082 20 6 -1.6853 -8.6747 -1.3373 21 6 -1.4883 -8.5995 -2.8654 22 8 -2.1161 -7.3887 -3.3210 23 6 -3.1590 -7.0697 -2.3698 24 6 -0.4052 -3.5314 -1.5776 25 6 0.2212 -2.3616 -1.2126 26 1 -0.4849 0.8401 -0.0004 27 1 2.6935 -3.6961 0.7234 28 1 1.5420 -5.7617 0.0597 29 1 0.0913 -6.8386 -1.5524 30 1 -1.0833 -5.8956 -2.5006 31 1 -1.8312 -4.3668 0.1811 32 1 -2.9699 -4.7863 -1.1218 33 1 -3.0447 -5.8363 1.7449 34 1 -4.1626 -4.6477 1.0333 35 1 -4.2843 -8.5120 -0.4137 36 1 -3.1498 -8.1603 0.9126 37 1 -2.2238 -9.5826 -1.0657 38 1 -0.7239 -8.6318 -0.8254 39 1 -0.4243 -8.5769 -3.1012 40 1 -1.9552 -9.4613 -3.3422 41 1 -4.0440 -7.6784 -2.5551 42 1 -3.4059 -6.0088 -2.4115 43 1 -1.2704 -3.4994 -2.2234 44 1 -0.1509 -1.4129 -1.5705 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000441363589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:27:17 Heat of formation + Delta-G solvation = -55.832558 kcal Electronic energy + Delta-G solvation = -25894.765053 eV Core-core repulsion = 22390.961871 eV Total energy + Delta-G solvation = -3503.803182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98110 -37.93394 -37.66224 -35.21067 -33.62434 -32.42976 -30.43470 -29.63150 -29.33164 -28.19984 -26.04936 -25.50536 -23.45236 -22.89508 -21.74241 -20.90634 -19.90134 -18.95498 -17.30670 -17.10366 -16.59251 -15.78718 -15.57696 -15.26609 -15.04203 -14.69769 -14.25904 -14.18839 -13.94068 -13.63078 -13.38705 -13.36066 -12.52425 -12.30683 -12.02809 -11.93199 -11.73891 -11.57852 -11.50729 -11.40264 -11.20182 -11.09913 -11.05089 -10.84712 -10.50917 -10.40493 -10.24318 -9.78560 -9.59754 -9.46163 -9.32052 -9.14274 -7.87972 -7.43617 -7.27443 -6.77945 -4.35912 2.71081 3.05585 3.07775 3.11332 3.15314 3.83900 3.87173 3.91899 4.10786 4.52104 4.65667 4.79177 4.80596 4.99242 5.13175 5.19372 5.38179 5.44086 5.49388 5.54669 5.62602 5.67337 5.73456 5.76617 5.81343 5.94543 5.97580 6.06770 6.23146 6.33132 6.39430 6.45769 6.51721 6.77816 6.94512 7.06551 7.15463 7.24023 7.36665 7.40601 7.44221 7.61061 7.88666 8.04815 8.14114 8.29474 8.63151 8.88765 8.96764 10.16259 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.003864 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.048112 B = 7244.289228 C = 7731.723324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.113 3.887 10 C -0.229 4.229 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.108 3.892 14 N -0.513 5.513 15 C 0.019 3.981 16 C 0.061 3.939 17 O -0.387 6.387 18 C 0.082 3.918 19 C 0.046 3.954 20 C -0.143 4.143 21 C 0.046 3.954 22 O -0.372 6.372 23 C 0.025 3.975 24 C -0.093 4.093 25 C -0.166 4.166 26 H 0.279 0.721 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.478 -12.690 -1.406 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.216 4.216 13 C -0.018 4.018 14 N -0.237 5.237 15 C -0.108 4.108 16 C -0.016 4.016 17 O -0.306 6.306 18 C 0.005 3.995 19 C -0.046 4.046 20 C -0.181 4.181 21 C -0.031 4.031 22 O -0.291 6.291 23 C -0.053 4.053 24 C -0.112 4.112 25 C -0.185 4.185 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.587 -12.553 -1.167 14.224 hybrid contribution 0.218 0.937 -0.454 1.064 sum -6.370 -11.616 -1.621 13.347 Atomic orbital electron populations 1.69832 1.07580 1.29075 1.35294 1.25899 0.94701 1.01275 0.92223 0.86305 0.81067 0.81065 0.78556 1.18404 1.19709 1.20004 1.19635 0.98148 0.91334 1.40075 0.90475 1.17618 0.91011 0.92002 0.88367 1.20967 1.03895 0.92929 1.07106 1.20334 0.95324 0.96275 0.97010 1.18923 1.01058 0.92706 1.08899 1.21040 0.91893 0.95639 0.93209 1.62372 1.11685 1.06337 1.43291 1.22879 0.95595 0.94096 0.98235 1.22779 0.92736 0.89855 0.96220 1.87992 1.34413 1.23267 1.84892 1.22399 0.92425 0.87756 0.96950 1.22608 0.93805 0.93867 0.94330 1.22882 1.01932 0.96960 0.96321 1.23181 0.98726 0.87770 0.93375 1.88964 1.49368 1.42083 1.48647 1.24122 0.90860 1.02104 0.88216 1.20533 0.98330 0.92810 0.99513 1.21284 0.99446 0.96635 1.01139 0.90965 0.89194 0.89612 0.92028 0.92576 0.87356 0.94299 0.92348 0.88514 0.88837 0.92158 0.90316 0.89004 0.89813 0.92660 0.92088 0.88789 0.90025 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.22 10.95 55.55 0.61 -19.61 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 3 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.46 -12.20 9.05 -37.74 -0.34 -12.54 16 8 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.11 2.96 5.57 -106.83 -0.60 2.37 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C -0.07 -1.56 9.67 -39.67 -0.38 -1.95 16 12 C -0.21 -4.55 4.15 -104.33 -0.43 -4.98 16 13 C 0.11 1.91 4.01 -4.97 -0.02 1.89 16 14 N -0.51 -8.21 4.64 -219.76 -1.02 -9.23 16 15 C 0.02 0.32 4.37 -3.61 -0.02 0.31 16 16 C 0.06 0.87 6.98 37.22 0.26 1.13 16 17 O -0.39 -5.43 10.72 -35.23 -0.38 -5.81 16 18 C 0.08 0.97 5.56 36.75 0.20 1.18 16 19 C 0.05 0.59 0.72 -131.24 -0.09 0.50 16 20 C -0.14 -1.56 5.64 -25.51 -0.14 -1.71 16 21 C 0.05 0.53 6.84 37.82 0.26 0.79 16 22 O -0.37 -5.47 9.27 -35.23 -0.33 -5.80 16 23 C 0.03 0.34 5.85 37.83 0.22 0.56 16 24 C -0.09 -2.12 7.87 -39.66 -0.31 -2.43 16 25 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 26 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 27 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.06 1.05 6.66 -51.94 -0.35 0.71 16 30 H 0.06 1.04 5.23 -51.93 -0.27 0.77 16 31 H 0.11 2.14 6.04 -51.93 -0.31 1.83 16 32 H 0.04 0.67 6.38 -51.93 -0.33 0.34 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.09 0.89 8.02 -51.93 -0.42 0.48 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16 38 H 0.09 1.07 7.31 -51.93 -0.38 0.69 16 39 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.73 7.92 -51.93 -0.41 0.31 16 42 H 0.09 1.43 6.19 -51.92 -0.32 1.11 16 43 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -27.44 335.20 -9.75 -37.19 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.45 Total: 8.27 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -2.20 Total: -23.59 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: -0.41 Total: -28.84 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -0.70 Total: -11.61 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.44 -9.75 -37.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000441363589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.646 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds