Wall clock time and date at job start Tue Mar 31 2020 08:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99831 * 2 1 4 4 H 1.48504 * 109.46844 * 239.99652 * 3 2 1 5 5 H 1.48496 * 109.47153 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47045 * 119.99717 * 3 2 1 7 7 C 1.37871 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00081 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46877 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99936 * 90.00092 * 10 9 7 12 12 C 1.50703 * 109.47126 * 89.99796 * 11 10 9 13 13 C 1.34507 * 125.79214 * 89.99864 * 12 11 10 14 14 C 1.41377 * 106.84473 * 179.97438 * 13 12 11 15 15 C 1.34519 * 106.84169 * 0.02562 * 14 13 12 16 16 O 1.34305 * 108.41620 * 359.73085 * 15 14 13 17 17 C 1.34773 * 119.99969 * 269.72057 * 10 9 7 18 18 O 1.21283 * 120.00092 * 180.02562 * 17 10 9 19 19 C 1.50702 * 120.00430 * 0.02562 * 17 10 9 20 20 C 1.52991 * 109.47286 * 179.97438 * 19 17 10 21 21 H 1.09000 * 110.43603 * 52.46232 * 20 19 17 22 22 C 1.54883 * 110.48761 * 289.77260 * 20 19 17 23 23 C 1.54893 * 102.74897 * 203.37966 * 22 20 19 24 24 C 1.54266 * 104.19329 * 37.94645 * 23 22 20 25 25 H 1.09007 * 117.40840 * 196.40992 * 24 23 22 26 26 C 1.52995 * 118.20364 * 40.56644 * 24 23 22 27 27 C 1.53003 * 60.37801 * 266.38299 * 26 24 23 28 28 H 1.09002 * 119.75673 * 248.87196 * 27 26 24 29 29 H 0.96998 * 119.99944 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46978 * 60.00053 * 9 7 2 31 31 H 1.09000 * 109.46976 * 299.99298 * 9 7 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 11 10 9 33 33 H 1.09005 * 109.47077 * 330.00338 * 11 10 9 34 34 H 1.08001 * 126.57506 * 0.04238 * 13 12 11 35 35 H 1.07999 * 126.58322 * 179.97438 * 14 13 12 36 36 H 1.08000 * 125.79372 * 180.02562 * 15 14 13 37 37 H 1.09009 * 109.46564 * 299.99895 * 19 17 10 38 38 H 1.09001 * 109.47030 * 59.99569 * 19 17 10 39 39 H 1.08999 * 110.75889 * 321.69424 * 22 20 19 40 40 H 1.09001 * 110.75866 * 85.06620 * 22 20 19 41 41 H 1.09001 * 110.48803 * 279.26276 * 23 22 20 42 42 H 1.09006 * 110.48285 * 156.61910 * 23 22 20 43 43 H 1.09000 * 117.46368 * 158.78655 * 26 24 23 44 44 H 1.08998 * 117.46111 * 13.98291 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.6791 -4.1694 1.2693 12 6 1.7623 -5.2836 1.7043 13 6 1.8978 -6.5834 1.3859 14 6 0.8264 -7.2700 2.0019 15 6 0.0998 -6.3485 2.6596 16 8 0.6746 -5.1480 2.4804 17 6 2.6367 -4.1285 -1.1666 18 8 3.4245 -5.0507 -1.1666 19 6 2.1426 -3.5596 -2.4718 20 6 2.7848 -4.3187 -3.6346 21 1 2.6377 -5.3922 -3.5158 22 6 4.2936 -3.9830 -3.7337 23 6 4.6175 -4.2990 -5.2150 24 6 3.3667 -3.8268 -5.9847 25 1 3.2392 -4.1886 -7.0051 26 6 2.7063 -2.5150 -5.5561 27 6 2.2014 -3.8395 -4.9799 28 1 1.2155 -4.2104 -5.2599 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8904 32 1 3.6885 -4.5593 1.1390 33 1 2.6867 -3.3877 2.0290 34 1 2.6764 -7.0191 0.7773 35 1 0.6286 -8.3306 1.9531 36 1 -0.7915 -6.5420 3.2379 37 1 1.0587 -3.6615 -2.5253 38 1 2.4120 -2.5053 -2.5337 39 1 4.4701 -2.9297 -3.5159 40 1 4.8756 -4.6192 -3.0669 41 1 4.7686 -5.3697 -5.3525 42 1 5.4975 -3.7437 -5.5399 43 1 2.0725 -2.0097 -6.2848 44 1 3.2717 -1.8611 -4.8922 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448836679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:23 Heat of formation + Delta-G solvation = -4.812754 kcal Electronic energy + Delta-G solvation = -25258.657596 eV Core-core repulsion = 21757.066798 eV Total energy + Delta-G solvation = -3501.590798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16847 -39.90628 -38.59149 -35.12870 -32.93358 -32.48728 -32.01939 -30.55271 -29.73861 -27.24820 -26.19832 -24.26329 -23.26806 -22.85344 -21.33151 -20.32749 -19.54165 -18.99964 -18.10861 -17.14058 -16.72455 -16.31809 -15.94452 -15.69869 -15.11886 -14.68149 -14.49183 -14.06534 -13.97232 -13.36284 -12.93743 -12.60949 -12.45463 -12.42557 -12.31833 -12.28794 -12.25046 -11.59972 -11.26750 -11.19515 -11.07994 -10.97526 -10.80341 -10.66932 -10.56572 -10.31764 -10.15156 -9.84070 -9.80279 -9.58139 -9.39621 -9.02689 -8.57157 -8.15190 -7.82930 -6.18903 -4.26734 2.04431 2.92210 3.23493 3.24853 3.28921 3.31108 3.55625 3.84948 4.07169 4.32992 4.65069 4.88274 5.07956 5.11312 5.14695 5.28832 5.34606 5.35677 5.38010 5.50593 5.61995 5.70436 5.76629 5.87601 5.95906 5.98493 6.02528 6.06707 6.12159 6.20596 6.29714 6.30775 6.34148 6.44076 6.45514 6.48921 6.60794 6.69845 6.80921 6.85234 7.19241 7.46472 7.53977 7.75049 8.04000 8.29275 8.77289 8.99087 9.41079 10.88046 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.008354 B = 0.006433 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.034998 B = 4351.321680 C = 6996.802862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.061 0.939 9 C 0.238 3.762 10 N -0.593 5.593 11 C 0.196 3.804 12 C -0.015 4.015 13 C -0.200 4.200 14 C -0.220 4.220 15 C -0.049 4.049 16 O -0.170 6.170 17 C 0.521 3.479 18 O -0.570 6.570 19 C -0.125 4.125 20 C -0.044 4.044 21 H 0.082 0.918 22 C -0.121 4.121 23 C -0.095 4.095 24 C -0.173 4.173 25 H 0.103 0.897 26 C -0.151 4.151 27 C -0.159 4.159 28 H 0.106 0.894 29 H 0.266 0.734 30 H 0.040 0.960 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.197 0.803 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 -9.038 -4.156 10.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.118 3.882 10 N -0.324 5.324 11 C 0.072 3.928 12 C -0.067 4.067 13 C -0.220 4.220 14 C -0.239 4.239 15 C -0.118 4.118 16 O -0.065 6.065 17 C 0.311 3.689 18 O -0.451 6.451 19 C -0.164 4.164 20 C -0.062 4.062 21 H 0.100 0.900 22 C -0.159 4.159 23 C -0.132 4.132 24 C -0.191 4.191 25 H 0.121 0.879 26 C -0.188 4.188 27 C -0.177 4.177 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.214 0.786 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.937 -9.085 -4.028 10.362 hybrid contribution 0.040 0.759 -0.003 0.760 sum 2.977 -8.325 -4.031 9.717 Atomic orbital electron populations 1.69921 1.06014 1.27418 1.49408 1.24931 0.94827 0.99229 0.94690 0.86585 0.79572 0.82654 0.78839 1.20042 1.21149 1.20127 1.21430 0.93540 0.90396 1.52423 0.92060 1.19475 0.87457 0.82353 0.98887 1.48323 1.46015 1.34469 1.03574 1.19665 0.93808 0.92041 0.87276 1.23275 0.89747 0.97153 0.96501 1.21648 1.02023 0.93073 1.05244 1.21789 0.98059 1.00395 1.03681 1.23957 1.00586 0.82304 1.04923 1.84085 1.34641 1.32703 1.55069 1.20633 0.80469 0.81942 0.85876 1.90557 1.36227 1.30325 1.88003 1.21599 1.01574 1.02251 0.91004 1.21316 0.94293 0.99653 0.90980 0.89954 1.22567 0.96084 1.01643 0.95562 1.21917 0.95998 1.00349 0.94961 1.23126 0.95422 1.02229 0.98314 0.87880 1.22868 1.02641 0.90565 1.02686 1.23148 0.97846 1.01509 0.95244 0.87577 0.92445 0.94216 0.94577 0.87804 0.88750 0.83513 0.84010 0.78635 0.89450 0.87786 0.91591 0.90260 0.91359 0.92006 0.88696 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 13.29 55.43 0.74 -23.65 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -13.74 9.31 -34.44 -0.32 -14.06 16 8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.24 5.63 4.97 -5.19 -0.03 5.60 16 10 N -0.59 -12.35 2.44 -176.43 -0.43 -12.78 16 11 C 0.20 3.68 5.93 -5.19 -0.03 3.65 16 12 C -0.02 -0.28 6.90 -35.63 -0.25 -0.52 16 13 C -0.20 -3.40 10.81 -39.71 -0.43 -3.83 16 14 C -0.22 -3.24 10.91 -39.70 -0.43 -3.67 16 15 C -0.05 -0.72 12.09 29.42 0.36 -0.36 16 16 O -0.17 -3.08 10.65 5.69 0.06 -3.02 16 17 C 0.52 10.46 7.49 -10.99 -0.08 10.38 16 18 O -0.57 -11.85 14.31 5.55 0.08 -11.77 16 19 C -0.12 -2.25 3.78 -27.89 -0.11 -2.35 16 20 C -0.04 -0.68 2.38 -88.97 -0.21 -0.89 16 21 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 22 C -0.12 -1.83 5.28 -24.74 -0.13 -1.96 16 23 C -0.09 -1.20 6.77 -25.07 -0.17 -1.37 16 24 C -0.17 -2.14 7.06 -89.51 -0.63 -2.77 16 25 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 26 C -0.15 -1.98 9.83 -26.73 -0.26 -2.24 16 27 C -0.16 -2.19 6.42 -89.50 -0.57 -2.76 16 28 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.04 0.97 6.43 -51.93 -0.33 0.64 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.10 1.84 7.43 -51.93 -0.39 1.46 16 33 H 0.09 1.74 8.07 -51.93 -0.42 1.32 16 34 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 35 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.09 1.57 7.40 -51.92 -0.38 1.18 16 38 H 0.10 2.01 7.90 -51.93 -0.41 1.60 16 39 H 0.07 1.04 7.21 -51.93 -0.37 0.66 16 40 H 0.08 1.29 7.29 -51.93 -0.38 0.91 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.10 1.34 7.21 -51.93 -0.37 0.97 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -28.42 362.84 -9.32 -37.74 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.82 Total: 8.27 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -3.40 Total: -15.54 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.31 Total: -36.43 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.79 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.42 -9.32 -37.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.923 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds