Wall clock time and date at job start Tue Mar 31 2020 08:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 N 1.46499 * 109.47260 * 180.27562 * 9 7 2 11 11 C 1.46497 * 120.00612 * 270.00459 * 10 9 7 12 12 C 1.50700 * 109.46942 * 89.99616 * 11 10 9 13 13 C 1.34519 * 125.78822 * 90.00448 * 12 11 10 14 14 C 1.41383 * 106.84094 * 179.97438 * 13 12 11 15 15 C 1.34525 * 106.84223 * 359.97438 * 14 13 12 16 16 O 1.34306 * 125.79037 * 269.69274 * 12 11 10 17 17 C 1.34779 * 119.99751 * 89.99944 * 10 9 7 18 18 O 1.21276 * 120.00238 * 179.97438 * 17 10 9 19 19 C 1.50698 * 120.00031 * 0.02562 * 17 10 9 20 20 C 1.52997 * 109.47600 * 179.97438 * 19 17 10 21 21 H 1.09000 * 110.43404 * 52.45450 * 20 19 17 22 22 C 1.54893 * 110.48613 * 289.77889 * 20 19 17 23 23 C 1.54332 * 103.00921 * 203.81181 * 22 20 19 24 24 C 1.54275 * 104.46244 * 37.20133 * 23 22 20 25 25 H 1.08994 * 117.41366 * 117.17396 * 24 23 22 26 26 C 1.52996 * 118.68539 * 272.97712 * 24 23 22 27 27 C 1.53007 * 60.37695 * 93.34670 * 26 24 23 28 28 H 1.09000 * 119.75187 * 111.12208 * 27 26 24 29 29 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 31 31 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 32 32 H 1.08999 * 109.47518 * 209.99467 * 11 10 9 33 33 H 1.08995 * 109.46848 * 330.00123 * 11 10 9 34 34 H 1.07993 * 126.57904 * 0.03207 * 13 12 11 35 35 H 1.07997 * 126.58088 * 180.02562 * 14 13 12 36 36 H 1.07995 * 125.78848 * 180.02562 * 15 14 13 37 37 H 1.08999 * 109.47465 * 299.99663 * 19 17 10 38 38 H 1.09004 * 109.47319 * 59.99805 * 19 17 10 39 39 H 1.08994 * 110.75602 * 321.68712 * 22 20 19 40 40 H 1.08995 * 110.76165 * 85.06163 * 22 20 19 41 41 H 1.09002 * 109.67818 * 278.77134 * 23 22 20 42 42 H 1.08996 * 111.03830 * 156.30471 * 23 22 20 43 43 H 1.08998 * 117.46269 * 345.75659 * 26 24 23 44 44 H 1.08997 * 117.46264 * 200.94524 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 7 2.2032 -3.6125 0.0102 11 6 2.6791 -4.1750 -1.2560 12 6 3.9222 -3.4444 -1.6943 13 6 5.1853 -3.7789 -1.3744 14 6 6.0299 -2.8299 -1.9947 15 6 5.2326 -1.9725 -2.6571 16 8 3.9572 -2.3524 -2.4755 17 6 2.6412 -4.1195 1.1796 18 8 3.4290 -5.0416 1.1837 19 6 2.1513 -3.5413 2.4822 20 6 2.7971 -4.2921 3.6485 21 1 3.8808 -4.3138 3.5336 22 6 2.2307 -5.7303 3.7474 23 6 2.4731 -6.0982 5.2266 24 6 2.2124 -4.7874 5.9972 25 1 1.3889 -4.7802 6.7112 26 6 3.3660 -3.7982 6.1751 27 6 2.4095 -3.6396 4.9915 28 1 1.7258 -2.7913 4.9585 29 1 -0.4850 0.8400 0.0004 30 1 0.6245 -2.5529 0.8956 31 1 0.6244 -2.5609 -0.8844 32 1 2.9076 -5.2322 -1.1210 33 1 1.9058 -4.0645 -2.0161 34 1 5.4947 -4.6129 -0.7621 35 1 7.1084 -2.7996 -1.9468 36 1 5.5623 -1.1248 -3.2394 37 1 2.4201 -2.4864 2.5355 38 1 1.0676 -3.6435 2.5404 39 1 1.1636 -5.7414 3.5258 40 1 2.7712 -6.4049 3.0835 41 1 3.5058 -6.4204 5.3602 42 1 1.7841 -6.8766 5.5541 43 1 4.3731 -4.1571 5.9628 44 1 3.2868 -3.0741 6.9860 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448836680.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:26 Heat of formation + Delta-G solvation = -3.911946 kcal Electronic energy + Delta-G solvation = -25421.718713 eV Core-core repulsion = 21920.166978 eV Total energy + Delta-G solvation = -3501.551736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.94516 -39.79709 -38.56787 -35.13806 -32.88403 -32.32684 -32.27155 -30.63952 -29.73659 -27.24683 -26.13861 -24.23247 -22.89563 -22.46221 -21.13334 -20.29951 -20.02232 -19.26008 -18.35206 -16.98387 -16.61253 -16.21226 -15.77797 -15.42914 -14.97264 -14.70160 -14.52938 -14.15581 -13.91159 -13.15652 -12.81076 -12.68790 -12.58166 -12.38202 -12.26066 -12.18527 -12.08485 -11.68359 -11.40534 -11.33131 -11.00861 -10.92386 -10.85683 -10.63571 -10.49430 -10.29754 -10.12019 -9.93257 -9.75104 -9.42403 -9.36794 -9.06610 -8.54286 -8.02965 -7.76885 -6.16307 -4.21252 2.25604 3.08648 3.23867 3.30573 3.32963 3.37106 3.69376 3.78937 4.00032 4.36200 4.66903 4.88700 4.96495 5.17581 5.23874 5.31504 5.33002 5.43681 5.53048 5.58182 5.63394 5.69859 5.74553 5.80021 5.86750 5.90631 5.95424 6.01530 6.15500 6.21016 6.29727 6.33939 6.40582 6.45225 6.51120 6.56888 6.62008 6.68498 6.78839 7.03404 7.15061 7.46746 7.74651 7.79188 8.07087 8.28009 8.81565 8.98837 9.45890 10.91110 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.005470 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.402822 B = 5117.774274 C = 6528.285366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.236 3.764 10 N -0.595 5.595 11 C 0.198 3.802 12 C -0.004 4.004 13 C -0.206 4.206 14 C -0.223 4.223 15 C -0.047 4.047 16 O -0.156 6.156 17 C 0.523 3.477 18 O -0.569 6.569 19 C -0.125 4.125 20 C -0.044 4.044 21 H 0.079 0.921 22 C -0.114 4.114 23 C -0.095 4.095 24 C -0.172 4.172 25 H 0.104 0.896 26 C -0.155 4.155 27 C -0.158 4.158 28 H 0.112 0.888 29 H 0.264 0.736 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.193 0.807 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 -7.785 4.210 10.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.078 0.922 9 C 0.117 3.883 10 N -0.326 5.326 11 C 0.074 3.926 12 C -0.056 4.056 13 C -0.226 4.226 14 C -0.242 4.242 15 C -0.116 4.116 16 O -0.051 6.051 17 C 0.312 3.688 18 O -0.450 6.450 19 C -0.164 4.164 20 C -0.063 4.063 21 H 0.097 0.903 22 C -0.151 4.151 23 C -0.132 4.132 24 C -0.190 4.190 25 H 0.122 0.878 26 C -0.192 4.192 27 C -0.176 4.176 28 H 0.130 0.870 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.210 0.790 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.642 -7.994 4.078 10.103 hybrid contribution 0.662 1.425 0.017 1.572 sum 5.304 -6.568 4.095 9.383 Atomic orbital electron populations 1.69911 1.05915 1.27164 1.50259 1.24879 0.94771 0.99098 0.94885 0.86576 0.79929 0.83222 0.78282 1.20544 1.21130 1.19853 1.21411 0.93501 0.90291 1.51241 0.92222 1.19517 0.87298 0.82726 0.98772 1.48357 1.44965 1.35591 1.03651 1.19640 0.90638 0.95518 0.86764 1.22954 0.97452 0.88737 0.96456 1.21554 0.92116 1.03296 1.05599 1.21719 1.00213 0.98377 1.03939 1.23894 0.81182 1.01640 1.04838 1.84118 1.28747 1.37828 1.54379 1.20562 0.80367 0.82081 0.85788 1.90561 1.35966 1.30478 1.87984 1.21626 1.01641 1.02094 0.91085 1.21314 1.00393 0.93639 0.90925 0.90273 1.22632 1.00787 0.96391 0.95321 1.21846 1.01138 0.95253 0.94964 1.23231 1.01242 0.92083 1.02445 0.87787 1.23012 0.95225 1.01365 0.99626 1.23337 1.03526 1.00341 0.90371 0.87015 0.92630 0.94004 0.94638 0.87981 0.89455 0.83873 0.84314 0.78972 0.87793 0.89240 0.91932 0.90324 0.91933 0.91645 0.89215 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -13.61 9.28 -34.44 -0.32 -13.93 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.24 5.48 5.01 -5.19 -0.03 5.46 16 10 N -0.59 -12.18 2.44 -176.44 -0.43 -12.61 16 11 C 0.20 3.66 5.98 -5.20 -0.03 3.63 16 12 C 0.00 -0.08 6.90 -35.62 -0.25 -0.32 16 13 C -0.21 -3.80 10.81 -39.70 -0.43 -4.23 16 14 C -0.22 -3.73 10.91 -39.70 -0.43 -4.16 16 15 C -0.05 -0.79 12.09 29.42 0.36 -0.44 16 16 O -0.16 -3.16 10.65 5.69 0.06 -3.10 16 17 C 0.52 10.37 7.49 -10.99 -0.08 10.29 16 18 O -0.57 -11.76 14.31 5.56 0.08 -11.68 16 19 C -0.12 -2.22 3.73 -27.89 -0.10 -2.33 16 20 C -0.04 -0.68 2.25 -88.96 -0.20 -0.88 16 21 H 0.08 1.35 7.90 -51.93 -0.41 0.94 16 22 C -0.11 -1.63 5.72 -25.03 -0.14 -1.77 16 23 C -0.09 -1.15 6.62 -25.37 -0.17 -1.32 16 24 C -0.17 -2.09 6.93 -89.50 -0.62 -2.71 16 25 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 26 C -0.16 -1.87 10.09 -26.73 -0.27 -2.14 16 27 C -0.16 -2.18 6.36 -89.50 -0.57 -2.75 16 28 H 0.11 1.56 8.05 -51.93 -0.42 1.14 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.04 0.99 6.44 -51.93 -0.33 0.65 16 31 H 0.04 0.87 7.89 -51.93 -0.41 0.46 16 32 H 0.10 1.73 7.42 -51.93 -0.39 1.34 16 33 H 0.09 1.49 7.89 -51.93 -0.41 1.08 16 34 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 35 H 0.14 1.92 8.06 -52.49 -0.42 1.49 16 36 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.10 2.02 8.00 -51.93 -0.42 1.61 16 38 H 0.09 1.53 7.28 -51.93 -0.38 1.15 16 39 H 0.06 0.88 7.96 -51.93 -0.41 0.47 16 40 H 0.08 1.22 7.29 -51.93 -0.38 0.84 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -28.98 364.30 -9.35 -38.33 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.88 Total: 7.37 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.38 Total: -15.94 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.31 Total: -36.39 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.98 -9.35 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448836680.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.421 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds