Wall clock time and date at job start Tue Mar 31 2020 08:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99938 * 3 2 1 5 5 H 1.48508 * 109.47296 * 29.99910 * 3 2 1 6 6 H 1.48506 * 109.46833 * 149.99710 * 3 2 1 7 7 C 1.39900 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99964 * 175.55805 * 7 2 1 9 9 C 1.41155 * 120.00264 * 355.56678 * 7 2 1 10 10 C 1.40876 * 120.15994 * 214.78158 * 9 7 2 11 11 C 1.36379 * 119.82230 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.17225 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83172 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00245 * 35.28504 * 13 12 11 15 15 O 1.21284 * 119.99532 * 355.71232 * 14 13 12 16 16 C 1.50700 * 120.00117 * 175.70520 * 14 13 12 17 17 O 1.42896 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99764 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47238 * 179.97438 * 18 17 16 20 20 C 1.54261 * 110.03170 * 292.90643 * 19 18 17 21 21 C 1.54966 * 104.16115 * 217.13473 * 20 19 18 22 22 C 1.54890 * 102.77586 * 37.88883 * 21 20 19 23 23 C 1.53877 * 110.03314 * 175.68712 * 19 18 17 24 24 C 1.39486 * 120.33072 * 0.25291 * 12 11 10 25 25 C 1.36376 * 120.16621 * 359.48497 * 24 12 11 26 26 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.08696 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.91375 * 179.97438 * 11 10 9 29 29 H 0.97004 * 119.99344 * 215.28325 * 13 12 11 30 30 H 1.08997 * 109.47011 * 60.00138 * 16 14 13 31 31 H 1.09002 * 109.46889 * 300.00391 * 16 14 13 32 32 H 1.09007 * 109.46996 * 299.99826 * 18 17 16 33 33 H 1.08994 * 109.47535 * 60.00009 * 18 17 16 34 34 H 1.09004 * 110.01512 * 54.29277 * 19 18 17 35 35 H 1.09005 * 110.48522 * 335.78227 * 20 19 18 36 36 H 1.09008 * 110.48722 * 98.42291 * 20 19 18 37 37 H 1.09004 * 110.71864 * 279.57627 * 21 20 19 38 38 H 1.08996 * 110.92159 * 156.29596 * 21 20 19 39 39 H 1.09006 * 110.48382 * 203.41188 * 22 21 20 40 40 H 1.08991 * 110.60085 * 80.81354 * 22 21 20 41 41 H 1.09000 * 110.02795 * 238.56601 * 23 19 18 42 42 H 1.08993 * 110.03131 * 359.95155 * 23 19 18 43 43 H 1.07996 * 119.91017 * 179.75144 * 24 12 11 44 44 H 1.08001 * 120.08192 * 180.25965 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0719 9 6 1.3056 -2.4322 0.0956 10 6 1.8649 -3.5180 0.7975 11 6 1.1803 -4.6943 0.8846 12 6 -0.0702 -4.8240 0.2804 13 7 -0.7627 -6.0284 0.3733 14 6 -0.6810 -6.7678 1.4971 15 8 0.0561 -6.4241 2.3969 16 6 -1.5056 -8.0216 1.6358 17 8 -1.2467 -8.6239 2.9055 18 6 -1.9823 -9.8266 3.1390 19 6 -1.6277 -10.3813 4.5202 20 6 -0.1591 -10.8531 4.5391 21 6 -0.1808 -12.1247 5.4245 22 6 -1.5179 -12.7971 5.0256 23 6 -2.4915 -11.6165 4.8298 24 6 -0.6278 -3.7552 -0.4212 25 6 0.0425 -2.5710 -0.5123 26 1 -0.4850 0.8401 -0.0004 27 1 2.8335 -3.4194 1.2647 28 1 1.6079 -5.5278 1.4220 29 1 -1.3040 -6.3351 -0.3709 30 1 -1.2416 -8.7197 0.8415 31 1 -2.5637 -7.7705 1.5621 32 1 -3.0504 -9.6134 3.0959 33 1 -1.7275 -10.5622 2.3762 34 1 -1.7839 -9.6162 5.2808 35 1 0.1764 -11.0962 3.5309 36 1 0.4811 -10.0899 4.9817 37 1 -0.1826 -11.8586 6.4816 38 1 0.6627 -12.7748 5.1927 39 1 -1.8684 -13.4522 5.8233 40 1 -1.4041 -13.3557 4.0966 41 1 -3.0661 -11.4513 5.7411 42 1 -3.1638 -11.8203 3.9965 43 1 -1.5947 -3.8644 -0.8897 44 1 -0.3924 -1.7430 -1.0524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454345066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:56 Heat of formation + Delta-G solvation = -76.669897 kcal Electronic energy + Delta-G solvation = -23482.921122 eV Core-core repulsion = 19978.214365 eV Total energy + Delta-G solvation = -3504.706757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76944 -38.88469 -37.47525 -36.65676 -34.39092 -32.92519 -30.84418 -29.61570 -29.22482 -28.89407 -27.50738 -24.81270 -24.25358 -21.65631 -20.93375 -20.81483 -20.02598 -19.53975 -17.38167 -17.12490 -17.01678 -16.35172 -15.93785 -15.51421 -15.29894 -15.07456 -14.51088 -14.12899 -13.84165 -13.57420 -13.36764 -12.99680 -12.65856 -12.40345 -12.13803 -11.92857 -11.69267 -11.51618 -11.38319 -11.35185 -11.23628 -11.14158 -10.99032 -10.94373 -10.83253 -10.70583 -10.64000 -9.99176 -9.75990 -9.48081 -9.40807 -9.07401 -8.84839 -7.53589 -6.85633 -6.60725 -4.33138 2.55310 3.01643 3.05884 3.09565 3.11120 3.15347 3.38163 3.98914 4.08532 4.36726 4.37637 4.59174 4.70880 4.92522 4.96663 5.11644 5.13169 5.17678 5.21171 5.22958 5.36993 5.41117 5.48762 5.54811 5.63771 5.66659 5.77128 5.85624 6.03693 6.10395 6.19573 6.21047 6.46223 6.75425 6.87715 7.03430 7.08637 7.21497 7.31516 7.65053 7.75419 7.89370 8.07709 8.26076 8.32970 8.63603 8.76165 8.93979 9.01170 10.30432 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037317 B = 0.002198 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.148902 B =12735.112691 C =13079.416938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.005 3.995 13 N -0.651 5.651 14 C 0.497 3.503 15 O -0.509 6.509 16 C 0.047 3.953 17 O -0.359 6.359 18 C 0.067 3.933 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.142 4.142 26 H 0.277 0.723 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.395 0.605 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.899 -19.925 3.514 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.087 4.087 13 N -0.296 5.296 14 C 0.283 3.717 15 O -0.384 6.384 16 C -0.033 4.033 17 O -0.277 6.277 18 C -0.010 4.010 19 C -0.110 4.110 20 C -0.152 4.152 21 C -0.165 4.165 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.229 0.771 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.453 -19.446 4.340 20.943 hybrid contribution -0.339 0.555 -0.530 0.839 sum -6.792 -18.892 3.809 20.434 Atomic orbital electron populations 1.69762 1.07282 1.28685 1.38218 1.25884 0.94955 1.01180 0.92585 0.86190 0.80253 0.80479 0.79010 1.19547 1.20316 1.18719 1.19495 0.94734 0.90204 1.44677 0.90601 1.17736 0.92312 0.92020 0.88248 1.20818 1.01248 0.94935 1.05481 1.20417 0.92784 0.97921 0.99432 1.17246 0.94163 0.85701 1.11629 1.42862 1.49319 1.21496 1.15963 1.20173 0.83878 0.85002 0.82672 1.90715 1.37970 1.70030 1.39640 1.22184 0.99246 0.94199 0.87664 1.88039 1.66560 1.39293 1.33776 1.22724 0.94962 0.86328 0.96980 1.21758 0.95961 0.97208 0.96095 1.22376 0.95703 0.96945 1.00143 1.22550 0.97180 0.96942 0.99876 1.22359 0.95473 0.97207 1.01189 1.22135 0.97735 0.94031 1.01644 1.20311 0.98352 0.93114 1.02291 1.21190 0.97318 0.95524 1.02132 0.91160 0.88541 0.87451 0.77121 0.90785 0.90644 0.93365 0.93249 0.89988 0.91533 0.91060 0.91541 0.91648 0.91777 0.91696 0.91417 0.91686 0.89052 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.29 10.60 55.55 0.59 -20.70 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.18 29.56 -169.99 -5.03 14.15 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.40 9.02 -37.85 -0.34 -12.74 16 8 H 0.08 1.96 7.85 -52.48 -0.41 1.55 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 10 C -0.20 -5.29 9.74 -39.25 -0.38 -5.67 16 11 C -0.09 -2.10 8.61 -39.79 -0.34 -2.44 16 12 C 0.00 0.10 6.31 -83.57 -0.53 -0.42 16 13 N -0.65 -11.42 5.30 -9.74 -0.05 -11.47 16 14 C 0.50 8.96 7.74 -10.99 -0.09 8.87 16 15 O -0.51 -11.73 13.92 -14.35 -0.20 -11.93 16 16 C 0.05 0.60 6.42 36.01 0.23 0.83 16 17 O -0.36 -5.15 9.71 -55.14 -0.54 -5.68 16 18 C 0.07 0.67 4.98 37.16 0.19 0.86 16 19 C -0.09 -0.88 3.19 -89.50 -0.29 -1.17 16 20 C -0.11 -1.13 6.21 -25.03 -0.16 -1.29 16 21 C -0.13 -1.01 6.91 -24.70 -0.17 -1.18 16 22 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 23 C -0.12 -0.86 6.46 -25.61 -0.17 -1.03 16 24 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 25 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 26 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 27 H 0.10 2.37 8.06 -52.49 -0.42 1.94 16 28 H 0.11 2.62 6.22 -52.49 -0.33 2.30 16 29 H 0.40 5.18 8.82 -40.82 -0.36 4.82 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.05 0.43 8.02 -51.93 -0.42 0.01 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.68 7.77 -51.93 -0.40 0.27 16 36 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.13 3.51 6.14 -52.49 -0.32 3.19 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -31.82 360.64 -10.26 -42.08 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.85 Total: 7.89 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -3.63 Total: -19.79 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.54 Total: -32.17 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.74 Total: -17.61 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.82 -10.26 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454345066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.589 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds