Wall clock time and date at job start Tue Mar 31 2020 08:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99938 * 3 2 1 5 5 H 1.48508 * 109.47296 * 29.99910 * 3 2 1 6 6 H 1.48506 * 109.46833 * 149.99710 * 3 2 1 7 7 C 1.39900 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99964 * 175.55805 * 7 2 1 9 9 C 1.41155 * 120.00264 * 355.56678 * 7 2 1 10 10 C 1.40876 * 120.15994 * 214.78158 * 9 7 2 11 11 C 1.36379 * 119.82230 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.17225 * 0.02562 * 11 10 9 13 13 N 1.39236 * 119.83172 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00245 * 35.28504 * 13 12 11 15 15 O 1.21284 * 119.99532 * 355.71232 * 14 13 12 16 16 C 1.50700 * 120.00117 * 175.70520 * 14 13 12 17 17 O 1.42896 * 109.47017 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99764 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47238 * 179.97438 * 18 17 16 20 20 C 1.54261 * 110.03170 * 292.90643 * 19 18 17 21 21 C 1.54966 * 104.16115 * 217.13473 * 20 19 18 22 22 C 1.54890 * 102.77586 * 37.88883 * 21 20 19 23 23 C 1.53877 * 110.03314 * 175.68712 * 19 18 17 24 24 C 1.39486 * 120.33072 * 0.25291 * 12 11 10 25 25 C 1.36376 * 120.16621 * 359.48497 * 24 12 11 26 26 H 0.97003 * 119.99910 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.08696 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.91375 * 179.97438 * 11 10 9 29 29 H 0.97004 * 119.99344 * 215.28325 * 13 12 11 30 30 H 1.08997 * 109.47011 * 60.00138 * 16 14 13 31 31 H 1.09002 * 109.46889 * 300.00391 * 16 14 13 32 32 H 1.09007 * 109.46996 * 299.99826 * 18 17 16 33 33 H 1.08994 * 109.47535 * 60.00009 * 18 17 16 34 34 H 1.09004 * 110.01512 * 54.29277 * 19 18 17 35 35 H 1.09005 * 110.48522 * 335.78227 * 20 19 18 36 36 H 1.09008 * 110.48722 * 98.42291 * 20 19 18 37 37 H 1.09004 * 110.71864 * 279.57627 * 21 20 19 38 38 H 1.08996 * 110.92159 * 156.29596 * 21 20 19 39 39 H 1.09006 * 110.48382 * 203.41188 * 22 21 20 40 40 H 1.08991 * 110.60085 * 80.81354 * 22 21 20 41 41 H 1.09000 * 110.02795 * 238.56601 * 23 19 18 42 42 H 1.08993 * 110.03131 * 359.95155 * 23 19 18 43 43 H 1.07996 * 119.91017 * 179.75144 * 24 12 11 44 44 H 1.08001 * 120.08192 * 180.25965 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2131 -0.0719 9 6 1.3056 -2.4322 0.0956 10 6 1.8649 -3.5180 0.7975 11 6 1.1803 -4.6943 0.8846 12 6 -0.0702 -4.8240 0.2804 13 7 -0.7627 -6.0284 0.3733 14 6 -0.6810 -6.7678 1.4971 15 8 0.0561 -6.4241 2.3969 16 6 -1.5056 -8.0216 1.6358 17 8 -1.2467 -8.6239 2.9055 18 6 -1.9823 -9.8266 3.1390 19 6 -1.6277 -10.3813 4.5202 20 6 -0.1591 -10.8531 4.5391 21 6 -0.1808 -12.1247 5.4245 22 6 -1.5179 -12.7971 5.0256 23 6 -2.4915 -11.6165 4.8298 24 6 -0.6278 -3.7552 -0.4212 25 6 0.0425 -2.5710 -0.5123 26 1 -0.4850 0.8401 -0.0004 27 1 2.8335 -3.4194 1.2647 28 1 1.6079 -5.5278 1.4220 29 1 -1.3040 -6.3351 -0.3709 30 1 -1.2416 -8.7197 0.8415 31 1 -2.5637 -7.7705 1.5621 32 1 -3.0504 -9.6134 3.0959 33 1 -1.7275 -10.5622 2.3762 34 1 -1.7839 -9.6162 5.2808 35 1 0.1764 -11.0962 3.5309 36 1 0.4811 -10.0899 4.9817 37 1 -0.1826 -11.8586 6.4816 38 1 0.6627 -12.7748 5.1927 39 1 -1.8684 -13.4522 5.8233 40 1 -1.4041 -13.3557 4.0966 41 1 -3.0661 -11.4513 5.7411 42 1 -3.1638 -11.8203 3.9965 43 1 -1.5947 -3.8644 -0.8897 44 1 -0.3924 -1.7430 -1.0524 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454345066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:55 Heat of formation + Delta-G solvation = -94.438333 kcal Electronic energy + Delta-G solvation = -23483.691620 eV Core-core repulsion = 19978.214365 eV Total energy + Delta-G solvation = -3505.477255 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25647 -39.78247 -39.03999 -37.76043 -36.14200 -34.73785 -31.75413 -31.47629 -30.87546 -29.57786 -28.80043 -26.47279 -25.13325 -23.44303 -22.64991 -21.54662 -21.35038 -20.53722 -19.28696 -18.52928 -18.22227 -17.42157 -17.18797 -16.94052 -16.38933 -16.16203 -15.78441 -15.59332 -15.29637 -14.83415 -14.54617 -14.20942 -14.17821 -13.98935 -13.62672 -13.39554 -13.24958 -12.90585 -12.82882 -12.69896 -12.47491 -12.14870 -11.97211 -11.90592 -11.78479 -11.68878 -11.48684 -11.40828 -11.31917 -11.21483 -10.79382 -10.61342 -10.56058 -9.48232 -8.75008 -8.51482 -6.34224 0.77228 1.12051 1.39112 1.43835 1.53123 1.73167 1.95345 2.23862 2.78873 3.04574 3.64529 3.70258 3.72732 3.80385 3.91523 4.19492 4.27455 4.37432 4.39289 4.42595 4.51427 4.51499 4.57353 4.68951 4.76382 4.85201 4.92163 4.92263 5.07407 5.09800 5.12464 5.13436 5.25237 5.32364 5.35607 5.42040 5.47357 5.48483 5.68240 5.88622 5.99495 6.10004 6.20034 6.38033 6.66448 6.72440 6.95588 6.98680 7.38340 8.41393 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.037317 B = 0.002198 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.148902 B =12735.112691 C =13079.416938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.223 4.223 11 C -0.099 4.099 12 C 0.021 3.979 13 N -0.640 5.640 14 C 0.492 3.508 15 O -0.567 6.567 16 C 0.057 3.943 17 O -0.398 6.398 18 C 0.064 3.936 19 C -0.096 4.096 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.159 4.159 26 H 0.285 0.715 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.421 0.579 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.043 0.957 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.129 0.871 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 -21.640 2.781 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.243 4.243 11 C -0.119 4.119 12 C -0.073 4.073 13 N -0.287 5.287 14 C 0.281 3.719 15 O -0.445 6.445 16 C -0.022 4.022 17 O -0.317 6.317 18 C -0.012 4.012 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.165 4.165 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.136 4.136 25 C -0.179 4.179 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.259 0.741 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.532 -21.213 3.572 23.142 hybrid contribution 0.246 0.927 -0.263 0.995 sum -8.287 -20.285 3.309 22.161 Atomic orbital electron populations 1.69819 1.08543 1.29998 1.38482 1.26750 0.95860 1.04325 0.91580 0.85092 0.78619 0.75754 0.79523 1.18267 1.19364 1.18809 1.19716 0.94823 0.91338 1.46936 0.90994 1.18054 0.93492 0.92635 0.89388 1.20930 1.01623 0.95600 1.06104 1.20517 0.93977 0.97381 1.00042 1.17305 0.93341 0.87435 1.09200 1.42757 1.48881 1.19820 1.17274 1.21277 0.83145 0.86076 0.81432 1.90700 1.40532 1.71685 1.41598 1.22220 0.99639 0.91960 0.88393 1.88003 1.67956 1.41073 1.34697 1.22937 0.95591 0.85255 0.97404 1.21806 0.96073 0.97796 0.95753 1.22372 0.95783 0.97263 1.00173 1.22550 0.98422 0.96131 0.99353 1.22364 0.94357 0.97142 1.02007 1.22117 0.97588 0.92789 1.02498 1.20582 0.99407 0.91937 1.01690 1.21197 0.97422 0.96548 1.02755 0.90425 0.88792 0.87842 0.74056 0.86878 0.87141 0.91446 0.91338 0.91981 0.91803 0.93763 0.91720 0.91087 0.90550 0.90914 0.90952 0.90118 0.85271 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.80 10.60 21.82 0.23 -44.57 16 2 C 0.03 1.39 5.42 85.24 0.46 1.85 16 3 Si 0.99 39.70 29.56 68.60 2.03 41.73 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.50 -27.85 9.02 23.39 0.21 -27.64 16 8 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 9 C 0.07 3.76 5.55 -21.28 -0.12 3.64 16 10 C -0.22 -12.00 9.74 22.48 0.22 -11.78 16 11 C -0.10 -4.97 8.61 22.14 0.19 -4.78 16 12 C 0.02 0.91 6.31 38.57 0.24 1.16 16 13 N -0.64 -20.93 5.30 -303.11 -1.61 -22.54 16 14 C 0.49 16.90 7.74 87.66 0.68 17.58 16 15 O -0.57 -26.35 13.92 15.99 0.22 -26.13 16 16 C 0.06 1.25 6.42 71.24 0.46 1.70 16 17 O -0.40 -10.71 9.71 -129.94 -1.26 -11.97 16 18 C 0.06 1.12 4.98 71.98 0.36 1.48 16 19 C -0.10 -1.73 3.19 -10.07 -0.03 -1.76 16 20 C -0.12 -2.33 6.21 31.69 0.20 -2.14 16 21 C -0.13 -1.88 6.91 31.91 0.22 -1.66 16 22 C -0.12 -1.37 6.83 31.67 0.22 -1.15 16 23 C -0.11 -1.36 6.46 31.32 0.20 -1.16 16 24 C -0.12 -5.20 9.90 22.14 0.22 -4.98 16 25 C -0.16 -8.38 8.62 22.48 0.19 -8.19 16 26 H 0.29 13.77 8.30 -92.71 -0.77 13.00 16 27 H 0.09 4.91 8.06 -2.91 -0.02 4.88 16 28 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 29 H 0.42 9.41 8.82 -92.71 -0.82 8.59 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.07 0.93 8.02 -2.39 -0.02 0.92 16 34 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 1.26 7.77 -2.38 -0.02 1.24 16 36 H 0.04 1.07 8.14 -2.38 -0.02 1.06 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.74 7.67 -2.39 -0.02 0.72 16 43 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.12 6.57 6.14 -2.91 -0.02 6.55 16 Total: -1.00 -73.19 360.64 3.71 -69.48 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.18 Total: 31.83 kcal Atomic # 6 Polarization: -41.75 SS G_CDS: 3.92 Total: -37.83 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.38 Total: -67.10 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -1.04 Total: -38.10 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -73.19 3.71 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454345066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.961 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds