Wall clock time and date at job start Tue Mar 31 2020 08:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 120.00026 * 2 1 4 4 H 1.48493 * 109.46943 * 239.99240 * 3 2 1 5 5 H 1.48498 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47276 * 119.99471 * 3 2 1 7 7 C 1.39932 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00300 * 196.79666 * 7 2 1 9 9 C 1.41416 * 119.99775 * 16.80229 * 7 2 1 10 10 C 1.40775 * 120.20784 * 25.15720 * 9 7 2 11 11 C 1.37646 * 119.88481 * 180.02562 * 10 9 7 12 12 C 1.38525 * 120.31944 * 0.02726 * 11 10 9 13 13 C 1.39254 * 120.43202 * 359.95303 * 12 11 10 14 14 N 1.39934 * 119.94572 * 180.02562 * 13 12 11 15 15 C 1.34783 * 119.99928 * 145.79300 * 14 13 12 16 16 O 1.21295 * 119.99727 * 354.88590 * 15 14 13 17 17 C 1.50693 * 120.00178 * 174.88994 * 15 14 13 18 18 C 1.53004 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.53005 * 109.46912 * 179.97438 * 18 17 15 20 20 C 1.53177 * 109.54580 * 294.55710 * 19 18 17 21 21 C 1.53087 * 109.16363 * 183.15226 * 20 19 18 22 22 O 1.42908 * 109.41592 * 57.60617 * 21 20 19 23 23 C 1.42898 * 114.09779 * 298.84506 * 22 21 20 24 24 C 1.53089 * 109.41996 * 61.15616 * 23 22 21 25 25 C 1.38284 * 120.10296 * 0.27551 * 13 12 11 26 26 H 0.97000 * 120.00413 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.06037 * 0.02717 * 10 9 7 28 28 H 1.08001 * 119.84148 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78266 * 179.97438 * 12 11 10 30 30 H 0.96998 * 120.00482 * 325.78732 * 14 13 12 31 31 H 1.08992 * 109.47494 * 60.00156 * 17 15 14 32 32 H 1.09000 * 109.46960 * 299.99759 * 17 15 14 33 33 H 1.09000 * 109.47149 * 299.99700 * 18 17 15 34 34 H 1.09003 * 109.47297 * 59.99981 * 18 17 15 35 35 H 1.09000 * 109.54204 * 54.82547 * 19 18 17 36 36 H 1.09004 * 109.52304 * 303.05766 * 20 19 18 37 37 H 1.08999 * 109.52386 * 63.24757 * 20 19 18 38 38 H 1.09001 * 109.48023 * 297.62709 * 21 20 19 39 39 H 1.08996 * 109.48300 * 177.58958 * 21 20 19 40 40 H 1.09006 * 109.48400 * 301.17447 * 23 22 21 41 41 H 1.09001 * 109.48779 * 181.14420 * 23 22 21 42 42 H 1.08993 * 109.52984 * 182.48875 * 24 23 22 43 43 H 1.09002 * 109.52062 * 62.29272 * 24 23 22 44 44 H 1.07994 * 120.15879 * 179.72569 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0533 -1.2317 0.2708 9 6 1.3461 -2.4105 -0.3530 10 6 0.2108 -2.3741 -1.1845 11 6 -0.4285 -3.5449 -1.5240 12 6 0.0394 -4.7598 -1.0508 13 6 1.1615 -4.8112 -0.2277 14 7 1.6258 -6.0441 0.2441 15 6 2.9475 -6.2463 0.4139 16 8 3.7402 -5.3947 0.0711 17 6 3.4403 -7.5304 1.0297 18 6 4.9682 -7.5053 1.1070 19 6 5.4686 -8.8088 1.7328 20 6 5.0008 -8.8908 3.1891 21 6 5.5715 -10.1588 3.8296 22 8 6.9973 -10.1383 3.7353 23 6 7.4931 -10.1096 2.3954 24 6 6.9997 -8.8396 1.6972 25 6 1.8146 -3.6455 0.1283 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1579 -1.4292 -1.5556 28 1 -1.2997 -3.5161 -2.1617 29 1 -0.4691 -5.6731 -1.3222 30 1 0.9965 -6.7532 0.4491 31 1 3.1218 -8.3732 0.4164 32 1 3.0270 -7.6343 2.0329 33 1 5.3812 -7.4016 0.1036 34 1 5.2873 -6.6625 1.7202 35 1 5.0738 -9.6569 1.1734 36 1 5.3545 -8.0161 3.7351 37 1 3.9119 -8.9253 3.2205 38 1 5.1853 -11.0347 3.3083 39 1 5.2771 -10.2005 4.8782 40 1 7.1320 -10.9849 1.8553 41 1 8.5830 -10.1159 2.4107 42 1 7.3400 -8.8374 0.6618 43 1 7.3936 -7.9639 2.2131 44 1 2.6823 -3.6840 0.7701 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456730439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:29 Heat of formation + Delta-G solvation = -87.587307 kcal Electronic energy + Delta-G solvation = -23897.380996 eV Core-core repulsion = 20392.200824 eV Total energy + Delta-G solvation = -3505.180172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.97585 -39.39627 -37.24504 -35.54813 -34.40377 -33.01937 -31.53667 -31.08468 -29.81121 -28.23438 -25.92832 -25.26460 -23.82010 -22.62111 -21.17606 -20.73926 -20.18516 -19.46527 -17.68867 -16.86596 -16.29370 -16.07951 -15.69221 -15.56310 -15.05562 -14.95568 -14.61243 -14.54381 -14.15553 -13.64730 -13.34788 -12.92067 -12.88212 -12.47406 -12.41420 -12.10210 -11.97323 -11.65086 -11.58227 -11.40370 -11.14526 -11.09882 -10.96000 -10.88811 -10.51877 -10.49366 -10.47934 -10.13980 -9.74683 -9.64952 -9.37344 -9.05210 -8.92780 -7.44131 -6.90395 -6.70015 -4.32760 2.62165 2.86427 3.09346 3.13268 3.22255 3.39782 3.60788 3.67004 3.97477 4.42973 4.48858 4.60112 4.65954 4.74691 4.91030 4.98871 5.09292 5.14445 5.21005 5.28110 5.41705 5.45942 5.51881 5.62975 5.68875 5.74317 5.80411 5.87267 5.97014 6.15330 6.25420 6.29709 6.40028 6.79363 6.92809 7.03731 7.06778 7.08779 7.26665 7.58005 7.74614 7.98774 8.10447 8.20078 8.28365 8.64448 8.76903 8.95417 9.00047 10.22858 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.002703 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.591614 B =10356.404512 C =11284.393306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.172 4.172 11 C -0.093 4.093 12 C -0.263 4.263 13 C 0.151 3.849 14 N -0.671 5.671 15 C 0.501 3.499 16 O -0.519 6.519 17 C -0.139 4.139 18 C -0.097 4.097 19 C -0.090 4.090 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.386 6.386 23 C 0.061 3.939 24 C -0.152 4.152 25 C -0.210 4.210 26 H 0.280 0.720 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.397 0.603 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -17.677 4.359 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.192 4.192 11 C -0.112 4.112 12 C -0.285 4.285 13 C 0.060 3.940 14 N -0.315 5.315 15 C 0.288 3.712 16 O -0.393 6.393 17 C -0.179 4.179 18 C -0.135 4.135 19 C -0.108 4.108 20 C -0.193 4.193 21 C -0.016 4.016 22 O -0.304 6.304 23 C -0.016 4.016 24 C -0.190 4.190 25 C -0.232 4.232 26 H 0.091 0.909 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.409 -16.916 4.320 18.966 hybrid contribution -0.383 0.396 -0.154 0.572 sum 7.026 -16.520 4.167 18.429 Atomic orbital electron populations 1.69816 1.07530 1.29213 1.35576 1.25899 0.94741 1.01261 0.92241 0.86359 0.80120 0.80143 0.80049 1.18805 1.20369 1.18998 1.19551 0.97766 0.90967 1.40576 0.90419 1.17490 0.90886 0.91640 0.88307 1.21347 0.99393 0.96849 1.01600 1.20463 0.98514 0.92745 0.99466 1.20042 1.02510 0.96863 1.09035 1.17450 0.96057 0.83533 0.97000 1.43528 1.07220 1.15106 1.65660 1.20697 0.82356 0.89053 0.79128 1.90752 1.54505 1.45580 1.48506 1.21714 0.97991 0.96076 1.02166 1.21364 0.93079 0.96925 1.02169 1.21235 0.95227 0.98538 0.95805 1.22333 1.01315 0.99377 0.96236 1.22592 0.81051 0.96603 1.01394 1.87928 1.21004 1.94878 1.26637 1.22583 0.99245 0.96582 0.83186 1.22247 0.95843 0.99322 1.01567 1.20957 1.04334 0.90991 1.06911 0.90893 0.86324 0.89077 0.89374 0.76909 0.89334 0.89006 0.90938 0.90851 0.91075 0.90711 0.90582 0.93342 0.88988 0.93349 0.89000 0.90695 0.90745 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 10.94 55.55 0.61 -20.30 16 2 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 3 Si 0.91 19.27 29.59 -169.99 -5.03 14.24 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.46 -12.75 9.05 -37.74 -0.34 -13.09 16 8 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 9 C 0.12 3.34 5.57 -106.85 -0.59 2.74 16 10 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 11 C -0.09 -2.20 10.02 -39.69 -0.40 -2.59 16 12 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 13 C 0.15 3.46 6.25 -83.76 -0.52 2.94 16 14 N -0.67 -11.85 5.34 -9.91 -0.05 -11.90 16 15 C 0.50 8.65 7.56 -10.99 -0.08 8.57 16 16 O -0.52 -11.45 13.73 5.54 0.08 -11.38 16 17 C -0.14 -1.56 5.47 -27.88 -0.15 -1.72 16 18 C -0.10 -1.10 3.98 -26.73 -0.11 -1.21 16 19 C -0.09 -0.78 2.27 -90.43 -0.21 -0.98 16 20 C -0.16 -1.28 5.10 -26.59 -0.14 -1.42 16 21 C 0.06 0.48 6.84 37.20 0.25 0.74 16 22 O -0.39 -3.90 10.77 -35.23 -0.38 -4.28 16 23 C 0.06 0.49 6.84 37.20 0.25 0.74 16 24 C -0.15 -1.30 5.42 -26.59 -0.14 -1.44 16 25 C -0.21 -5.53 8.39 -38.68 -0.32 -5.85 16 26 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 27 H 0.12 3.23 6.17 -52.48 -0.32 2.90 16 28 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 30 H 0.40 5.34 8.82 -40.82 -0.36 4.98 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.86 6.66 -51.93 -0.35 0.52 16 33 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 34 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.54 6.75 -51.93 -0.35 0.19 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 2.83 6.48 -52.49 -0.34 2.49 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -31.86 354.93 -9.51 -41.37 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.76 Total: 8.77 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.32 Total: -21.87 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.55 Total: -32.20 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.30 Total: -15.66 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.86 -9.51 -41.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456730439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.218 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds