Wall clock time and date at job start Tue Mar 31 2020 08:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48493 * 109.47031 * 240.00293 * 3 2 1 5 5 H 1.48501 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46891 * 120.00162 * 3 2 1 7 7 C 1.39942 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99431 * 162.64606 * 7 2 1 9 9 C 1.41427 * 120.00424 * 342.64412 * 7 2 1 10 10 C 1.40781 * 120.18093 * 154.91848 * 9 7 2 11 11 C 1.37709 * 120.04403 * 179.97438 * 10 9 7 12 12 C 1.38380 * 120.41101 * 359.72352 * 11 10 9 13 13 C 1.39874 * 120.35424 * 0.55748 * 12 11 10 14 14 C 1.47887 * 120.02575 * 179.71666 * 13 12 11 15 15 O 1.21548 * 120.00191 * 179.72826 * 14 13 12 16 16 N 1.34782 * 119.99750 * 359.44975 * 14 13 12 17 17 C 1.46500 * 119.99830 * 180.27657 * 16 14 13 18 18 C 1.53003 * 109.46708 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46607 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.46607 * 179.97438 * 19 18 17 21 21 H 1.08995 * 110.46038 * 52.39723 * 20 19 18 22 22 C 1.54513 * 110.50719 * 175.00113 * 20 19 18 23 23 C 1.54481 * 104.06142 * 118.64570 * 22 20 19 24 24 O 1.44418 * 104.80533 * 23.97681 * 23 22 20 25 25 C 1.44423 * 105.27643 * 319.49156 * 24 23 22 26 26 C 1.39037 * 119.95085 * 359.44459 * 13 12 11 27 27 H 0.96999 * 120.00166 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.97746 * 0.02562 * 10 9 7 29 29 H 1.07999 * 119.79792 * 180.02562 * 11 10 9 30 30 H 1.07992 * 119.82142 * 180.27325 * 12 11 10 31 31 H 0.96996 * 119.99483 * 0.27974 * 16 14 13 32 32 H 1.08998 * 109.46661 * 300.00028 * 17 16 14 33 33 H 1.08998 * 109.47329 * 60.00188 * 17 16 14 34 34 H 1.08996 * 109.47003 * 299.99682 * 18 17 16 35 35 H 1.08998 * 109.47242 * 59.99926 * 18 17 16 36 36 H 1.08996 * 109.47278 * 299.99635 * 19 18 17 37 37 H 1.08998 * 109.47280 * 60.00071 * 19 18 17 38 38 H 1.09009 * 110.51063 * 237.28596 * 22 20 19 39 39 H 1.08999 * 110.51514 * 359.97438 * 22 20 19 40 40 H 1.09003 * 110.36745 * 142.80864 * 23 22 20 41 41 H 1.08997 * 110.37080 * 265.03100 * 23 22 20 42 42 H 1.09002 * 110.37077 * 281.68051 * 25 24 23 43 43 H 1.08996 * 110.37761 * 159.34857 * 25 24 23 44 44 H 1.07998 * 120.19933 * 180.25320 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0511 -1.2331 -0.2796 9 6 1.3490 -2.4091 0.3643 10 6 1.8189 -3.6484 -0.1103 11 6 1.1755 -4.8123 0.2472 12 6 0.0691 -4.7746 1.0774 13 6 -0.4156 -3.5521 1.5540 14 6 -1.6024 -3.5197 2.4358 15 8 -2.0203 -2.4576 2.8537 16 7 -2.2239 -4.6676 2.7717 17 6 -3.4031 -4.6350 3.6403 18 6 -3.9109 -6.0608 3.8644 19 6 -5.1421 -6.0268 4.7721 20 6 -5.6503 -7.4525 4.9957 21 1 -4.8410 -8.0957 5.3412 22 6 -6.8169 -7.4587 6.0088 23 6 -8.0092 -8.0230 5.2048 24 8 -7.4064 -8.7950 4.1436 25 6 -6.2758 -8.0137 3.6995 26 6 0.2225 -2.3679 1.2025 27 1 -0.4850 0.8400 0.0004 28 1 2.6849 -3.6865 -0.7544 29 1 1.5396 -5.7610 -0.1188 30 1 -0.4255 -5.6935 1.3552 31 1 -1.8903 -5.5151 2.4382 32 1 -3.1360 -4.1899 4.5988 33 1 -4.1854 -4.0402 3.1689 34 1 -4.1778 -6.5062 2.9061 35 1 -3.1285 -6.6553 4.3361 36 1 -4.8748 -5.5815 5.7304 37 1 -5.9247 -5.4322 4.3009 38 1 -6.5853 -8.1070 6.8541 39 1 -7.0313 -6.4462 6.3507 40 1 -8.6244 -8.6629 5.8374 41 1 -8.6073 -7.2104 4.7926 42 1 -6.6070 -7.1997 3.0547 43 1 -5.5596 -8.6465 3.1755 44 1 -0.1459 -1.4221 1.5715 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456750588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:36 Heat of formation + Delta-G solvation = -87.716102 kcal Electronic energy + Delta-G solvation = -23450.648358 eV Core-core repulsion = 19945.462601 eV Total energy + Delta-G solvation = -3505.185757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86453 -39.17180 -37.10097 -35.87733 -33.92739 -33.61329 -31.33501 -30.15476 -29.45117 -28.95311 -25.82696 -25.16541 -23.43670 -22.34316 -21.56151 -20.89448 -20.59832 -19.43373 -17.71787 -16.77474 -16.31574 -16.04514 -15.95947 -15.39166 -15.22817 -15.01028 -14.63807 -14.28307 -13.76555 -13.60561 -13.27544 -13.08511 -12.94659 -12.70791 -12.50371 -12.42799 -11.85653 -11.80637 -11.62780 -11.32716 -11.16787 -11.13134 -11.07098 -10.88070 -10.76996 -10.72970 -10.50957 -10.11123 -10.03651 -9.70088 -9.21727 -9.02250 -8.66247 -7.63529 -7.52553 -6.80200 -4.42149 2.20695 2.81627 3.07135 3.08900 3.16083 3.58912 3.71175 3.86759 3.91975 4.20745 4.35744 4.51489 4.63618 4.71252 4.81747 4.92061 4.98473 5.08660 5.29335 5.35008 5.37084 5.45820 5.54915 5.55543 5.59756 5.60444 5.68033 5.75450 5.90423 6.04719 6.05928 6.14071 6.26490 6.46061 6.71055 6.86222 6.98305 7.01385 7.20669 7.37416 7.69379 7.75186 7.91812 8.09122 8.18690 8.49900 8.79629 8.82850 8.95270 10.14644 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028431 B = 0.002325 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.588893 B =12039.736268 C =12712.143756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.563 3.437 15 O -0.547 6.547 16 N -0.739 5.739 17 C 0.121 3.879 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.122 4.122 21 H 0.085 0.915 22 C -0.153 4.153 23 C 0.043 3.957 24 O -0.379 6.379 25 C 0.047 3.953 26 C -0.093 4.093 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 -12.297 8.952 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.353 3.647 15 O -0.425 6.425 16 N -0.392 5.392 17 C -0.003 4.003 18 C -0.171 4.171 19 C -0.146 4.146 20 C -0.140 4.140 21 H 0.103 0.897 22 C -0.191 4.191 23 C -0.034 4.034 24 O -0.298 6.298 25 C -0.030 4.030 26 C -0.113 4.113 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.717 -11.559 9.162 18.837 hybrid contribution 0.532 0.487 -0.145 0.736 sum -11.185 -11.072 9.017 18.138 Atomic orbital electron populations 1.69781 1.07573 1.29880 1.33594 1.25971 0.94785 1.01552 0.92321 0.86315 0.80095 0.80080 0.79973 1.18959 1.20228 1.18722 1.19554 0.98024 0.90991 1.40357 0.90103 1.17601 0.91214 0.92478 0.89102 1.21103 1.03467 0.92823 1.05725 1.20440 0.96116 0.96736 0.98357 1.20338 1.01468 0.94630 1.07393 1.19480 0.96576 0.95328 1.01747 1.18859 0.83298 0.82827 0.79681 1.90692 1.66523 1.30167 1.55139 1.45955 1.30903 1.09842 1.52549 1.21221 0.88057 0.96288 0.94724 1.21835 0.97910 0.96791 1.00516 1.21572 0.97393 0.95280 1.00323 1.22577 0.98311 0.97627 0.95514 0.89691 1.23030 0.94940 1.02314 0.98788 1.23411 0.95538 0.95495 0.88916 1.89123 1.43862 1.43890 1.52883 1.23582 0.88064 0.95443 0.95892 1.21639 0.96453 0.96431 0.96772 0.90381 0.88603 0.88892 0.89252 0.76603 0.91968 0.91939 0.91193 0.91129 0.91061 0.91269 0.90671 0.90196 0.89281 0.92269 0.91885 0.89021 0.84877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.85 10.97 55.55 0.61 -20.25 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.10 9.05 -37.73 -0.34 -12.45 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 9 C 0.10 2.61 5.57 -106.88 -0.59 2.02 16 10 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 11 C -0.10 -2.09 10.01 -39.72 -0.40 -2.48 16 12 C -0.22 -4.56 9.55 -38.92 -0.37 -4.93 16 13 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 14 C 0.56 12.35 7.77 -12.31 -0.10 12.26 16 15 O -0.55 -13.83 16.33 5.32 0.09 -13.75 16 16 N -0.74 -12.01 5.51 -61.23 -0.34 -12.34 16 17 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 18 C -0.13 -1.19 5.21 -26.73 -0.14 -1.33 16 19 C -0.11 -0.82 4.43 -26.73 -0.12 -0.94 16 20 C -0.12 -0.88 3.11 -89.05 -0.28 -1.16 16 21 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -1.00 6.74 -25.16 -0.17 -1.17 16 23 C 0.04 0.32 7.63 37.93 0.29 0.61 16 24 O -0.38 -3.85 11.65 -35.23 -0.41 -4.26 16 25 C 0.05 0.39 6.51 37.93 0.25 0.63 16 26 C -0.09 -2.49 8.23 -38.44 -0.32 -2.80 16 27 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 28 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 31 H 0.40 5.54 6.49 -40.82 -0.26 5.28 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.60 7.63 -51.93 -0.40 0.20 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 38 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.51 7.74 -51.93 -0.40 0.11 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.13 3.86 5.76 -52.49 -0.30 3.56 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -30.77 360.94 -9.75 -40.52 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.72 Total: 8.31 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.39 Total: -17.46 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.27 Total: -32.59 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.32 Total: -18.00 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.77 -9.75 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456750588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.197 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds