Wall clock time and date at job start Tue Mar 31 2020 08:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99697 * 2 1 4 4 H 1.48501 * 109.47421 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46721 * 120.00013 * 3 2 1 6 6 H 1.48498 * 109.47098 * 239.99739 * 3 2 1 7 7 C 1.39930 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99720 * 164.81727 * 7 2 1 9 9 C 1.41405 * 119.99838 * 344.81689 * 7 2 1 10 10 C 1.40772 * 120.21440 * 335.14619 * 9 7 2 11 11 C 1.37634 * 119.88700 * 179.69597 * 10 9 7 12 12 C 1.38529 * 120.32308 * 0.57622 * 11 10 9 13 13 C 1.39252 * 120.42675 * 359.72419 * 12 11 10 14 14 N 1.39941 * 119.94745 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99698 * 215.65313 * 14 13 12 16 16 O 1.21283 * 120.00244 * 355.49550 * 15 14 13 17 17 C 1.50703 * 119.99928 * 175.49694 * 15 14 13 18 18 C 1.52999 * 109.47127 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.46995 * 304.99871 * 18 17 15 20 20 C 1.53002 * 109.47211 * 64.99995 * 18 17 15 21 21 C 1.53002 * 109.46696 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47181 * 299.99818 * 21 20 18 23 23 C 1.53002 * 109.47157 * 60.00464 * 22 21 20 24 24 C 1.52996 * 109.46830 * 185.00319 * 18 17 15 25 25 H 1.09008 * 109.47360 * 299.99307 * 24 18 17 26 26 O 1.42892 * 109.47994 * 59.99972 * 24 18 17 27 27 C 1.38282 * 120.10387 * 359.96664 * 13 12 11 28 28 H 0.97001 * 120.00346 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.05397 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84491 * 180.29470 * 11 10 9 31 31 H 1.08005 * 119.79201 * 179.73741 * 12 11 10 32 32 H 0.96998 * 119.99713 * 35.65069 * 14 13 12 33 33 H 1.09003 * 109.47118 * 300.00301 * 17 15 14 34 34 H 1.09000 * 109.47238 * 59.99870 * 17 15 14 35 35 H 1.08996 * 109.46946 * 300.00214 * 20 18 17 36 36 H 1.09000 * 109.46961 * 60.00471 * 20 18 17 37 37 H 1.09004 * 109.46732 * 179.97438 * 21 20 18 38 38 H 1.09000 * 109.46955 * 60.00561 * 21 20 18 39 39 H 1.08997 * 109.47280 * 300.00200 * 22 21 20 40 40 H 1.09006 * 109.46860 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46946 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46914 * 60.00046 * 23 22 21 43 43 H 0.96696 * 114.00764 * 180.02562 * 26 24 18 44 44 H 1.07999 * 120.15460 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0959 1.6964 1.2126 6 1 3.0960 1.6965 -1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0597 -1.2280 -0.2455 9 6 1.3379 -2.4152 0.3197 10 6 0.1790 -2.3898 1.1183 11 6 -0.4714 -3.5645 1.4207 12 6 0.0155 -4.7740 0.9527 13 6 1.1644 -4.8152 0.1668 14 7 1.6477 -6.0426 -0.3002 15 6 2.9757 -6.2498 -0.4002 16 8 3.7499 -5.3466 -0.1639 17 6 3.4986 -7.6037 -0.8057 18 6 5.0278 -7.5699 -0.8419 19 1 5.3580 -6.7628 -1.4958 20 6 5.5663 -7.3346 0.5708 21 6 7.0955 -7.3014 0.5346 22 6 7.6222 -8.6363 0.0039 23 6 7.0837 -8.8717 -1.4088 24 6 5.5549 -8.9045 -1.3729 25 1 5.2248 -9.7117 -0.7190 26 8 5.0521 -9.1244 -2.6922 27 6 1.8282 -3.6450 -0.1530 28 1 -0.4851 0.8400 -0.0004 29 1 -0.2022 -1.4496 1.4888 30 1 -1.3632 -3.5438 2.0295 31 1 -0.4993 -5.6911 1.1986 32 1 1.0270 -6.7442 -0.5518 33 1 3.1690 -8.3515 -0.0844 34 1 3.1170 -7.8595 -1.7942 35 1 5.1907 -6.3838 0.9490 36 1 5.2361 -8.1418 1.2246 37 1 7.4792 -7.1333 1.5409 38 1 7.4261 -6.4945 -0.1194 39 1 7.2916 -9.4432 0.6579 40 1 8.7117 -8.6128 -0.0215 41 1 7.4592 -9.8224 -1.7870 42 1 7.4143 -8.0648 -2.0628 43 1 5.3461 -9.9543 -3.0920 44 1 2.7191 -3.6759 -0.7627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456758553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:53 Heat of formation + Delta-G solvation = -92.772040 kcal Electronic energy + Delta-G solvation = -24565.014358 eV Core-core repulsion = 21059.609359 eV Total energy + Delta-G solvation = -3505.404999 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10028 -38.85075 -37.07678 -35.65323 -34.38352 -32.99568 -32.61163 -29.79681 -29.76111 -28.53333 -26.49063 -25.23581 -22.84237 -22.15259 -21.05731 -20.65090 -19.93012 -19.40180 -17.64249 -17.39392 -16.59853 -15.65491 -15.36140 -15.10191 -14.92598 -14.56120 -14.52850 -14.23589 -13.91370 -13.26139 -13.15792 -12.96263 -12.79038 -12.69546 -12.25746 -12.01564 -11.70111 -11.56303 -11.45889 -11.13739 -11.06780 -11.03854 -10.87986 -10.75225 -10.46936 -10.44089 -10.26682 -10.07711 -9.93815 -9.58508 -9.29875 -8.99817 -8.74230 -7.39845 -6.87422 -6.64876 -4.29338 2.69459 2.90890 3.11208 3.15372 3.25074 3.42108 3.72654 3.99942 4.02546 4.50200 4.59190 4.69690 4.82759 4.98264 5.05239 5.14266 5.21643 5.28233 5.37564 5.49934 5.56825 5.62017 5.78954 5.80020 5.85607 5.95614 6.06644 6.13939 6.15746 6.30133 6.43390 6.45206 6.49051 6.86580 7.08972 7.12332 7.15251 7.32010 7.47621 7.63545 7.80069 8.03700 8.15980 8.25862 8.33477 8.69765 8.82852 8.99981 9.04532 10.26689 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003323 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.009039 B = 8424.252238 C = 9308.861187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.457 4.457 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.173 4.173 11 C -0.094 4.094 12 C -0.262 4.262 13 C 0.148 3.852 14 N -0.671 5.671 15 C 0.503 3.497 16 O -0.516 6.516 17 C -0.133 4.133 18 C -0.060 4.060 19 H 0.086 0.914 20 C -0.120 4.120 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.150 4.150 24 C 0.109 3.891 25 H 0.053 0.947 26 O -0.566 6.566 27 C -0.209 4.209 28 H 0.279 0.721 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.374 0.626 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.938 -17.158 -1.413 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.193 4.193 11 C -0.113 4.113 12 C -0.284 4.284 13 C 0.057 3.943 14 N -0.314 5.314 15 C 0.290 3.710 16 O -0.392 6.392 17 C -0.173 4.173 18 C -0.079 4.079 19 H 0.104 0.896 20 C -0.158 4.158 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.188 4.188 24 C 0.050 3.950 25 H 0.071 0.929 26 O -0.371 6.371 27 C -0.231 4.231 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.231 0.769 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.220 0.780 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.043 -15.787 -1.139 18.229 hybrid contribution 0.170 -0.264 -0.278 0.420 sum 9.212 -16.052 -1.417 18.562 Atomic orbital electron populations 1.69812 1.07491 1.29080 1.35990 1.25900 0.94761 1.01241 0.92313 0.86350 0.80074 0.80169 0.80005 1.20394 1.18842 1.19022 1.19565 0.97210 0.90792 1.41133 0.90454 1.17518 0.91094 0.91703 0.88231 1.21405 0.99056 0.96891 1.01943 1.20459 0.98386 0.92786 0.99661 1.20059 1.01560 0.96865 1.09902 1.17476 0.95754 0.83672 0.97435 1.43496 1.06918 1.15854 1.65145 1.20671 0.82296 0.90325 0.77679 1.90696 1.55917 1.44485 1.48066 1.21668 0.96897 0.95054 1.03667 1.20851 0.93059 0.96195 0.97809 0.89576 1.21734 0.95082 1.03784 0.95179 1.21545 0.95984 0.97080 1.01182 1.21503 1.00088 0.98178 0.95693 1.22238 0.96204 1.02140 0.98204 1.21863 0.92186 0.97332 0.83582 0.92863 1.86551 1.74997 1.44790 1.30734 1.21120 1.03872 0.90858 1.07220 0.90962 0.86110 0.89159 0.89431 0.76905 0.89515 0.88322 0.88756 0.92624 0.91872 0.91649 0.92077 0.91964 0.92022 0.91020 0.77954 0.87092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.15 10.82 55.55 0.60 -20.55 16 2 C 0.07 1.95 5.19 -17.35 -0.09 1.86 16 3 Si 0.91 19.45 29.59 -169.99 -5.03 14.42 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.46 -12.80 9.06 -37.74 -0.34 -13.14 16 8 H 0.08 2.13 7.89 -52.48 -0.41 1.72 16 9 C 0.12 3.30 5.58 -106.85 -0.60 2.70 16 10 C -0.17 -4.65 8.69 -38.85 -0.34 -4.98 16 11 C -0.09 -2.24 10.01 -39.69 -0.40 -2.64 16 12 C -0.26 -5.91 9.97 -39.10 -0.39 -6.30 16 13 C 0.15 3.43 6.28 -83.76 -0.53 2.91 16 14 N -0.67 -12.22 5.33 -9.91 -0.05 -12.27 16 15 C 0.50 8.95 7.38 -10.99 -0.08 8.87 16 16 O -0.52 -11.23 11.44 5.56 0.06 -11.17 16 17 C -0.13 -1.70 5.10 -27.88 -0.14 -1.84 16 18 C -0.06 -0.76 1.58 -90.62 -0.14 -0.90 16 19 H 0.09 1.30 7.95 -51.93 -0.41 0.89 16 20 C -0.12 -1.51 4.95 -26.73 -0.13 -1.64 16 21 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 22 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 23 C -0.15 -1.29 5.54 -26.76 -0.15 -1.43 16 24 C 0.11 1.06 2.90 -26.76 -0.08 0.98 16 25 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 26 O -0.57 -5.54 12.56 -35.23 -0.44 -5.98 16 27 C -0.21 -5.55 8.43 -38.68 -0.33 -5.87 16 28 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 29 H 0.12 3.32 6.08 -52.48 -0.32 3.00 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.40 5.68 8.82 -40.82 -0.36 5.32 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.10 1.20 7.54 -51.93 -0.39 0.81 16 35 H 0.09 1.51 5.95 -51.93 -0.31 1.20 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.37 2.00 9.08 45.56 0.41 2.41 16 44 H 0.11 3.04 6.26 -52.49 -0.33 2.71 16 LS Contribution 350.84 15.07 5.29 5.29 Total: -1.00 -31.67 350.84 -9.53 -41.20 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.91 Total: 13.12 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -4.05 Total: -24.06 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.55 Total: -32.82 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.38 Total: -17.15 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.67 -9.53 -41.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456758553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.574 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds