Wall clock time and date at job start Tue Mar 31 2020 08:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99697 * 2 1 4 4 H 1.48501 * 109.47421 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46721 * 120.00013 * 3 2 1 6 6 H 1.48498 * 109.47098 * 239.99739 * 3 2 1 7 7 C 1.39930 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99720 * 164.81727 * 7 2 1 9 9 C 1.41405 * 119.99838 * 344.81689 * 7 2 1 10 10 C 1.40772 * 120.21440 * 335.14619 * 9 7 2 11 11 C 1.37634 * 119.88700 * 179.69597 * 10 9 7 12 12 C 1.38529 * 120.32308 * 0.57622 * 11 10 9 13 13 C 1.39252 * 120.42675 * 359.72419 * 12 11 10 14 14 N 1.39941 * 119.94745 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99698 * 215.65313 * 14 13 12 16 16 O 1.21283 * 120.00244 * 355.49550 * 15 14 13 17 17 C 1.50703 * 119.99928 * 175.49694 * 15 14 13 18 18 C 1.52999 * 109.47127 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.46995 * 304.99871 * 18 17 15 20 20 C 1.53002 * 109.47211 * 64.99995 * 18 17 15 21 21 C 1.53002 * 109.46696 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47181 * 299.99818 * 21 20 18 23 23 C 1.53002 * 109.47157 * 60.00464 * 22 21 20 24 24 C 1.52996 * 109.46830 * 185.00319 * 18 17 15 25 25 H 1.09008 * 109.47360 * 299.99307 * 24 18 17 26 26 O 1.42892 * 109.47994 * 59.99972 * 24 18 17 27 27 C 1.38282 * 120.10387 * 359.96664 * 13 12 11 28 28 H 0.97001 * 120.00346 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.05397 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.84491 * 180.29470 * 11 10 9 31 31 H 1.08005 * 119.79201 * 179.73741 * 12 11 10 32 32 H 0.96998 * 119.99713 * 35.65069 * 14 13 12 33 33 H 1.09003 * 109.47118 * 300.00301 * 17 15 14 34 34 H 1.09000 * 109.47238 * 59.99870 * 17 15 14 35 35 H 1.08996 * 109.46946 * 300.00214 * 20 18 17 36 36 H 1.09000 * 109.46961 * 60.00471 * 20 18 17 37 37 H 1.09004 * 109.46732 * 179.97438 * 21 20 18 38 38 H 1.09000 * 109.46955 * 60.00561 * 21 20 18 39 39 H 1.08997 * 109.47280 * 300.00200 * 22 21 20 40 40 H 1.09006 * 109.46860 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.46946 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46914 * 60.00046 * 23 22 21 43 43 H 0.96696 * 114.00764 * 180.02562 * 26 24 18 44 44 H 1.07999 * 120.15460 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2772 2.7465 0.0006 5 1 3.0959 1.6964 1.2126 6 1 3.0960 1.6965 -1.2124 7 6 2.0079 -1.2118 -0.0005 8 1 3.0597 -1.2280 -0.2455 9 6 1.3379 -2.4152 0.3197 10 6 0.1790 -2.3898 1.1183 11 6 -0.4714 -3.5645 1.4207 12 6 0.0155 -4.7740 0.9527 13 6 1.1644 -4.8152 0.1668 14 7 1.6477 -6.0426 -0.3002 15 6 2.9757 -6.2498 -0.4002 16 8 3.7499 -5.3466 -0.1639 17 6 3.4986 -7.6037 -0.8057 18 6 5.0278 -7.5699 -0.8419 19 1 5.3580 -6.7628 -1.4958 20 6 5.5663 -7.3346 0.5708 21 6 7.0955 -7.3014 0.5346 22 6 7.6222 -8.6363 0.0039 23 6 7.0837 -8.8717 -1.4088 24 6 5.5549 -8.9045 -1.3729 25 1 5.2248 -9.7117 -0.7190 26 8 5.0521 -9.1244 -2.6922 27 6 1.8282 -3.6450 -0.1530 28 1 -0.4851 0.8400 -0.0004 29 1 -0.2022 -1.4496 1.4888 30 1 -1.3632 -3.5438 2.0295 31 1 -0.4993 -5.6911 1.1986 32 1 1.0270 -6.7442 -0.5518 33 1 3.1690 -8.3515 -0.0844 34 1 3.1170 -7.8595 -1.7942 35 1 5.1907 -6.3838 0.9490 36 1 5.2361 -8.1418 1.2246 37 1 7.4792 -7.1333 1.5409 38 1 7.4261 -6.4945 -0.1194 39 1 7.2916 -9.4432 0.6579 40 1 8.7117 -8.6128 -0.0215 41 1 7.4592 -9.8224 -1.7870 42 1 7.4143 -8.0648 -2.0628 43 1 5.3461 -9.9543 -3.0920 44 1 2.7191 -3.6759 -0.7627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456758553.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:52 Heat of formation + Delta-G solvation = -113.790782 kcal Electronic energy + Delta-G solvation = -24565.925799 eV Core-core repulsion = 21059.609359 eV Total energy + Delta-G solvation = -3506.316440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45009 -39.99054 -38.82119 -36.47826 -36.13281 -34.81187 -33.65229 -31.75180 -30.66671 -30.13430 -27.72038 -27.22131 -23.84221 -23.38766 -22.76413 -22.15972 -20.97869 -20.77048 -19.49763 -18.16016 -18.00389 -17.40636 -16.94554 -16.49429 -16.29360 -16.11659 -15.65248 -15.30730 -15.04101 -14.72356 -14.65156 -14.22061 -14.07906 -13.84973 -13.69367 -13.49420 -13.07900 -12.98657 -12.92026 -12.79536 -12.51545 -12.29198 -12.19004 -12.01152 -11.90837 -11.60404 -11.55548 -11.35704 -11.16303 -11.11020 -10.82353 -10.68232 -10.34799 -9.40160 -8.76487 -8.59532 -6.38650 0.89125 1.01130 1.34160 1.45839 1.49234 1.83569 2.19356 2.30363 2.73071 3.31107 3.62253 3.68331 3.76669 3.97284 4.06965 4.17143 4.29117 4.39763 4.45821 4.47545 4.47591 4.59489 4.63968 4.68434 4.80716 4.97713 5.04675 5.07039 5.11926 5.13459 5.19749 5.21846 5.25552 5.28897 5.29956 5.33797 5.48275 5.54847 5.77811 5.88368 6.07613 6.12498 6.34993 6.67217 6.70735 6.93341 7.00165 7.01069 7.40208 8.32511 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.003323 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.009039 B = 8424.252238 C = 9308.861187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.037 3.963 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.087 3.913 10 C -0.200 4.200 11 C -0.092 4.092 12 C -0.251 4.251 13 C 0.156 3.844 14 N -0.662 5.662 15 C 0.496 3.504 16 O -0.561 6.561 17 C -0.118 4.118 18 C -0.063 4.063 19 H 0.047 0.953 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.148 4.148 24 C 0.117 3.883 25 H 0.079 0.921 26 O -0.583 6.583 27 C -0.239 4.239 28 H 0.289 0.711 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.420 0.580 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.395 0.605 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.618 -20.189 -1.117 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.220 4.220 11 C -0.111 4.111 12 C -0.272 4.272 13 C 0.062 3.938 14 N -0.308 5.308 15 C 0.286 3.714 16 O -0.439 6.439 17 C -0.157 4.157 18 C -0.082 4.082 19 H 0.065 0.935 20 C -0.155 4.155 21 C -0.159 4.159 22 C -0.148 4.148 23 C -0.186 4.186 24 C 0.059 3.941 25 H 0.097 0.903 26 O -0.392 6.392 27 C -0.260 4.260 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.150 0.850 32 H 0.258 0.742 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.245 0.755 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 8.703 -18.887 -0.866 20.813 hybrid contribution 0.244 0.546 -0.381 0.709 sum 8.947 -18.340 -1.247 20.444 Atomic orbital electron populations 1.69844 1.08676 1.30553 1.35867 1.26703 0.95649 1.04217 0.91187 0.85267 0.78867 0.75743 0.79868 1.18236 1.18654 1.18818 1.19733 0.96899 0.92620 1.44078 0.92090 1.17854 0.92157 0.92409 0.89120 1.21372 0.99653 0.97715 1.03271 1.20845 0.98875 0.92234 0.99161 1.20498 1.00732 0.98082 1.07895 1.17576 0.95279 0.84558 0.96369 1.43456 1.07791 1.14687 1.64849 1.21712 0.81620 0.91831 0.76242 1.90704 1.56997 1.46550 1.49685 1.21690 0.96833 0.92097 1.05100 1.20839 0.93009 0.97163 0.97171 0.93471 1.21635 0.96189 1.02149 0.95513 1.21547 0.94964 0.98263 1.01170 1.21474 1.00717 0.96787 0.95859 1.22231 0.95565 1.02882 0.97890 1.21738 0.92591 0.95744 0.84054 0.90305 1.86496 1.75302 1.46587 1.30819 1.21072 1.04074 0.92280 1.08603 0.89991 0.87528 0.85921 0.85014 0.74197 0.85926 0.86921 0.93157 0.90452 0.91484 0.93849 0.90260 0.90862 0.89161 0.93021 0.75509 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.00 10.82 21.82 0.24 -44.76 16 2 C 0.04 2.00 5.19 85.25 0.44 2.44 16 3 Si 0.98 41.13 29.59 68.60 2.03 43.16 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.50 -30.15 9.06 23.46 0.21 -29.94 16 8 H 0.06 3.67 7.89 -2.91 -0.02 3.65 16 9 C 0.09 5.19 5.58 -21.31 -0.12 5.07 16 10 C -0.20 -11.09 8.69 22.75 0.20 -10.89 16 11 C -0.09 -4.33 10.01 22.20 0.22 -4.11 16 12 C -0.25 -10.80 9.97 22.58 0.23 -10.57 16 13 C 0.16 7.21 6.28 38.10 0.24 7.45 16 14 N -0.66 -23.41 5.33 -303.65 -1.62 -25.03 16 15 C 0.50 17.75 7.38 87.66 0.65 18.39 16 16 O -0.56 -25.98 11.44 -3.04 -0.03 -26.01 16 17 C -0.12 -2.80 5.10 29.85 0.15 -2.64 16 18 C -0.06 -1.54 1.58 -10.79 -0.02 -1.56 16 19 H 0.05 1.51 7.95 -2.39 -0.02 1.49 16 20 C -0.12 -2.93 4.95 30.60 0.15 -2.78 16 21 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 22 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 23 C -0.15 -2.18 5.54 30.58 0.17 -2.01 16 24 C 0.12 1.94 2.90 30.58 0.09 2.03 16 25 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 26 O -0.58 -9.78 12.56 -148.98 -1.87 -11.65 16 27 C -0.24 -13.35 8.43 22.85 0.19 -13.16 16 28 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 29 H 0.11 6.10 6.08 -2.91 -0.02 6.09 16 30 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.42 10.82 8.82 -92.71 -0.82 10.00 16 33 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.44 7.54 -2.39 -0.02 2.42 16 35 H 0.05 1.71 5.95 -2.39 -0.01 1.70 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.39 2.83 9.08 -74.06 -0.67 2.16 16 44 H 0.09 5.16 6.26 -2.91 -0.02 5.14 16 Total: -1.00 -75.36 350.84 1.44 -73.93 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.47 Total: 36.55 kcal Atomic # 6 Polarization: -49.35 SS G_CDS: 3.17 Total: -46.18 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.38 Total: -69.79 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.91 Total: -37.66 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -75.36 1.44 -73.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456758553.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.864 kcal (2) G-P(sol) polarization free energy of solvation -75.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds