Wall clock time and date at job start Tue Mar 31 2020 08:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86801 * 120.00007 * 2 1 4 4 H 1.48503 * 109.46781 * 239.99578 * 3 2 1 5 5 H 1.48504 * 109.47075 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47266 * 119.99399 * 3 2 1 7 7 C 1.40222 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99683 * 197.86983 * 7 2 1 9 9 C 1.41102 * 120.00441 * 17.87267 * 7 2 1 10 10 C 1.40891 * 120.10766 * 204.63227 * 9 7 2 11 11 C 1.36314 * 119.89415 * 180.02562 * 10 9 7 12 12 C 1.40015 * 120.10689 * 359.97438 * 11 10 9 13 13 C 1.47641 * 119.89688 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99789 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99939 * 180.02562 * 13 12 11 16 16 C 1.46501 * 119.99696 * 179.72881 * 15 13 12 17 17 C 1.53002 * 109.47157 * 180.27265 * 16 15 13 18 18 C 1.52999 * 109.47144 * 179.97438 * 17 16 15 19 19 C 1.53009 * 109.46876 * 179.97438 * 18 17 16 20 20 H 1.08999 * 110.45377 * 52.40050 * 19 18 17 21 21 C 1.54502 * 110.50797 * 175.00310 * 19 18 17 22 22 C 1.54481 * 104.06527 * 118.64583 * 21 19 18 23 23 O 1.44433 * 104.80082 * 23.97558 * 22 21 19 24 24 C 1.44427 * 105.27494 * 319.49347 * 23 22 21 25 25 C 1.40014 * 120.20861 * 0.27502 * 12 11 10 26 26 C 1.36318 * 120.10517 * 359.48791 * 25 12 11 27 27 H 0.96997 * 119.99958 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.05436 * 0.04496 * 10 9 7 29 29 H 1.07998 * 119.94678 * 180.02562 * 11 10 9 30 30 H 0.96993 * 119.99944 * 359.97438 * 15 13 12 31 31 H 1.09002 * 109.47047 * 300.27085 * 16 15 13 32 32 H 1.08995 * 109.47391 * 60.27127 * 16 15 13 33 33 H 1.08994 * 109.47236 * 300.00057 * 17 16 15 34 34 H 1.09006 * 109.46590 * 59.99742 * 17 16 15 35 35 H 1.08994 * 109.47659 * 300.00482 * 18 17 16 36 36 H 1.09003 * 109.46589 * 60.00428 * 18 17 16 37 37 H 1.09002 * 110.51233 * 237.29206 * 21 19 18 38 38 H 1.09004 * 110.51611 * 0.02562 * 21 19 18 39 39 H 1.09000 * 110.37596 * 142.80596 * 22 21 19 40 40 H 1.09000 * 110.37668 * 265.04148 * 22 21 19 41 41 H 1.09000 * 110.36658 * 281.67995 * 24 23 22 42 42 H 1.08993 * 110.37702 * 159.34589 * 24 23 22 43 43 H 1.08001 * 119.94760 * 179.71721 * 25 12 11 44 44 H 1.07999 * 120.05401 * 180.25239 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0943 1.6963 -1.2125 5 1 1.2755 2.7465 -0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2368 0.2876 9 6 1.3532 -2.4071 -0.3739 10 6 1.8267 -3.6494 0.0923 11 6 1.1915 -4.7990 -0.2726 12 6 0.0698 -4.7465 -1.1090 13 6 -0.6149 -5.9944 -1.5008 14 8 -0.2049 -7.0655 -1.0970 15 7 -1.6946 -5.9463 -2.3062 16 6 -2.3704 -7.1851 -2.6999 17 6 -3.5517 -6.8533 -3.6140 18 6 -4.2571 -8.1470 -4.0256 19 6 -5.4388 -7.8151 -4.9392 20 1 -5.1149 -7.1838 -5.7666 21 6 -6.0930 -9.1102 -5.4701 22 6 -7.5379 -9.0509 -4.9269 23 8 -7.7898 -7.6468 -4.7008 24 6 -6.5657 -7.1264 -4.1379 25 6 -0.4014 -3.5147 -1.5791 26 6 0.2243 -2.3594 -1.2156 27 1 -0.4850 0.8400 -0.0004 28 1 2.6914 -3.6909 0.7380 29 1 1.5535 -5.7517 0.0846 30 1 -2.0218 -5.0919 -2.6281 31 1 -1.6692 -7.8285 -3.2314 32 1 -2.7330 -7.6998 -1.8101 33 1 -4.2528 -6.2099 -3.0825 34 1 -3.1890 -6.3386 -4.5038 35 1 -3.5558 -8.7901 -4.5571 36 1 -4.6197 -8.6620 -3.1359 37 1 -6.0948 -9.1181 -6.5601 38 1 -5.5749 -9.9870 -5.0814 39 1 -8.2367 -9.4481 -5.6631 40 1 -7.6152 -9.6071 -3.9926 41 1 -6.4935 -7.3860 -3.0817 42 1 -6.5177 -6.0454 -4.2680 43 1 -1.2642 -3.4795 -2.2277 44 1 -0.1423 -1.4094 -1.5755 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456785010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:23 Heat of formation + Delta-G solvation = -91.847282 kcal Electronic energy + Delta-G solvation = -23272.458919 eV Core-core repulsion = 19767.094021 eV Total energy + Delta-G solvation = -3505.364898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.84238 -39.07233 -37.19322 -35.84395 -33.88150 -33.75372 -31.31592 -30.17810 -29.45747 -28.99417 -26.34602 -25.07980 -23.31637 -22.01259 -21.53923 -20.85996 -20.59061 -19.50255 -17.53825 -16.91784 -16.61593 -16.11379 -15.99902 -15.55521 -15.20230 -15.14346 -14.26433 -14.05335 -13.83333 -13.58731 -13.29069 -13.06091 -12.92832 -12.76327 -12.46015 -12.11757 -11.96066 -11.80022 -11.73445 -11.37913 -11.28751 -11.27391 -11.11173 -10.99097 -10.84891 -10.74167 -10.63673 -10.09465 -10.07302 -9.56826 -9.35745 -8.97162 -8.59711 -7.73205 -7.55276 -7.04705 -4.61362 2.22909 2.91622 2.93446 2.97522 3.02642 3.63389 3.72724 3.78896 3.86850 4.23023 4.37886 4.53464 4.55970 4.72732 4.84298 4.94056 5.01445 5.11072 5.32000 5.36935 5.38682 5.48181 5.55486 5.57013 5.59645 5.62146 5.72739 5.85669 5.97984 6.03485 6.08642 6.21564 6.31162 6.47802 6.75860 6.81634 6.93516 7.05510 7.12618 7.42408 7.64474 7.78197 7.84754 8.06063 8.24026 8.38615 8.61918 8.74303 9.07765 9.87320 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.022006 B = 0.002286 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.064389 B =12243.216605 C =13301.589050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.571 3.429 14 O -0.577 6.577 15 N -0.744 5.744 16 C 0.124 3.876 17 C -0.134 4.134 18 C -0.107 4.107 19 C -0.122 4.122 20 H 0.085 0.915 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.379 6.379 24 C 0.047 3.953 25 C -0.063 4.063 26 C -0.179 4.179 27 H 0.287 0.713 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.397 0.603 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.199 -9.132 -9.466 17.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.042 4.042 12 C -0.289 4.289 13 C 0.365 3.635 14 O -0.459 6.459 15 N -0.397 5.397 16 C 0.000 4.000 17 C -0.171 4.171 18 C -0.145 4.145 19 C -0.141 4.141 20 H 0.103 0.897 21 C -0.191 4.191 22 C -0.034 4.034 23 O -0.298 6.298 24 C -0.030 4.030 25 C -0.082 4.082 26 C -0.198 4.198 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.232 0.768 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.338 -9.622 -9.208 17.490 hybrid contribution 0.290 1.079 -0.080 1.120 sum -11.048 -8.543 -9.287 16.772 Atomic orbital electron populations 1.69736 1.07910 1.30162 1.31691 1.26104 0.94822 1.01892 0.91899 0.86256 0.80204 0.79427 0.80354 1.18471 1.20051 1.18653 1.19815 0.98417 0.91190 1.37583 0.89739 1.17789 0.90398 0.92173 0.87162 1.20715 1.04633 0.92638 1.07846 1.20368 0.92938 0.97150 0.93713 1.18906 1.04509 0.91065 1.14460 1.18599 0.78671 0.89615 0.76574 1.90629 1.66618 1.31789 1.56891 1.45912 1.31974 1.09005 1.52777 1.21163 0.93339 0.87701 0.97841 1.21843 0.97206 0.98179 0.99914 1.21568 0.96223 0.97502 0.99209 1.22580 0.95866 0.96818 0.98790 0.89679 1.23027 0.96033 0.98326 1.01669 1.23413 0.96226 0.83576 1.00150 1.89128 1.34918 1.22171 1.83535 1.23583 0.82927 0.99458 0.97010 1.20470 0.97368 0.92588 0.97768 1.20977 0.99945 0.96900 1.01957 0.90168 0.88382 0.88119 0.76792 0.92198 0.92205 0.91202 0.91151 0.91114 0.91332 0.90672 0.90225 0.89293 0.92293 0.91898 0.88982 0.89351 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.40 10.95 55.56 0.61 -17.79 16 2 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 3 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.44 -10.96 9.04 -37.75 -0.34 -11.30 16 8 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 9 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 10 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 11 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 12 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 13 C 0.57 12.20 7.76 -12.42 -0.10 12.10 16 14 O -0.58 -13.88 16.32 5.29 0.09 -13.79 16 15 N -0.74 -12.25 5.50 -61.31 -0.34 -12.59 16 16 C 0.12 1.65 5.67 -4.04 -0.02 1.63 16 17 C -0.13 -1.25 5.21 -26.73 -0.14 -1.39 16 18 C -0.11 -0.83 4.43 -26.73 -0.12 -0.95 16 19 C -0.12 -0.91 3.11 -89.05 -0.28 -1.19 16 20 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -1.02 6.74 -25.17 -0.17 -1.19 16 22 C 0.04 0.32 7.63 37.93 0.29 0.61 16 23 O -0.38 -3.94 11.65 -35.23 -0.41 -4.36 16 24 C 0.05 0.40 6.51 37.93 0.25 0.65 16 25 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 26 C -0.18 -4.35 8.64 -39.27 -0.34 -4.69 16 27 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 28 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 29 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 30 H 0.40 5.79 6.47 -40.82 -0.26 5.53 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.63 7.63 -51.93 -0.40 0.24 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.46 7.73 -51.93 -0.40 0.06 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.52 7.74 -51.93 -0.40 0.12 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 44 H 0.12 2.95 6.15 -52.49 -0.32 2.63 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -29.25 360.66 -9.77 -39.02 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.71 Total: 9.34 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -3.40 Total: -17.42 kcal Atomic # 7 Polarization: -30.65 SS G_CDS: 0.27 Total: -30.37 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.32 Total: -18.14 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.25 -9.77 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456785010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.829 kcal (2) G-P(sol) polarization free energy of solvation -29.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds