Wall clock time and date at job start Tue Mar 31 2020 08:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00202 * 2 1 4 4 H 1.48496 * 109.47106 * 270.00125 * 3 2 1 5 5 H 1.48505 * 109.46809 * 29.99910 * 3 2 1 6 6 H 1.48493 * 109.47463 * 149.99928 * 3 2 1 7 7 C 1.37881 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99404 * 186.17233 * 7 2 1 9 9 C 1.50697 * 120.00520 * 6.17901 * 7 2 1 10 10 H 1.08997 * 109.47441 * 181.36710 * 9 7 2 11 11 C 1.53005 * 109.46653 * 301.36265 * 9 7 2 12 12 C 1.50701 * 109.47199 * 295.00275 * 11 9 7 13 13 O 1.21277 * 119.99973 * 359.71844 * 12 11 9 14 14 N 1.34773 * 119.99878 * 180.02562 * 12 11 9 15 15 C 1.46496 * 120.00254 * 179.97438 * 14 12 11 16 16 H 1.09001 * 110.01533 * 34.29489 * 15 14 12 17 17 C 1.54272 * 110.03172 * 272.90669 * 15 14 12 18 18 C 1.54964 * 104.15747 * 217.13307 * 17 15 14 19 19 C 1.54888 * 102.77856 * 37.88726 * 18 17 15 20 20 C 1.53878 * 110.03781 * 155.68659 * 15 14 12 21 21 H 1.09005 * 110.02720 * 359.97438 * 20 15 14 22 22 O 1.42898 * 110.03207 * 238.56993 * 20 15 14 23 23 C 1.50701 * 109.47206 * 61.35833 * 9 7 2 24 24 C 1.38239 * 119.99384 * 91.37507 * 23 9 7 25 25 C 1.38231 * 119.99670 * 179.78679 * 24 23 9 26 26 C 1.38243 * 120.00037 * 0.44342 * 25 24 23 27 27 C 1.38228 * 119.99749 * 359.80989 * 26 25 24 28 28 C 1.38235 * 120.00586 * 359.97438 * 27 26 25 29 29 H 0.96996 * 119.99835 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47094 * 174.99646 * 11 9 7 31 31 H 1.09009 * 109.46991 * 55.00376 * 11 9 7 32 32 H 0.97004 * 119.99964 * 359.97438 * 14 12 11 33 33 H 1.08997 * 110.48145 * 335.77974 * 17 15 14 34 34 H 1.08998 * 110.48306 * 98.42731 * 17 15 14 35 35 H 1.08996 * 110.71989 * 279.57128 * 18 17 15 36 36 H 1.09002 * 110.92162 * 156.29821 * 18 17 15 37 37 H 1.08998 * 110.48335 * 203.40465 * 19 18 17 38 38 H 1.08997 * 110.59803 * 80.81713 * 19 18 17 39 39 H 0.96699 * 113.99788 * 179.97438 * 22 20 15 40 40 H 1.07998 * 120.00151 * 0.02562 * 24 23 9 41 41 H 1.08000 * 120.00363 * 180.27687 * 25 24 23 42 42 H 1.07996 * 119.99870 * 179.83556 * 26 25 24 43 43 H 1.08002 * 119.99753 * 180.02562 * 27 26 25 44 44 H 1.07993 * 120.00817 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0799 -1.1967 0.1011 9 6 1.2576 -2.4955 -0.1393 10 1 1.9623 -3.3257 -0.0932 11 6 0.2417 -2.6251 0.9974 12 6 0.9699 -2.7227 2.3132 13 8 2.1822 -2.6968 2.3387 14 7 0.2742 -2.8450 3.4610 15 6 0.9820 -2.9404 4.7400 16 1 1.8869 -2.3333 4.7119 17 6 1.3414 -4.4111 5.0367 18 6 1.1525 -4.5457 6.5689 19 6 -0.0980 -3.6724 6.8380 20 6 0.0676 -2.4707 5.8850 21 1 -0.9028 -2.1713 5.4888 22 8 0.6725 -1.3767 6.5772 23 6 0.5368 -2.5213 -1.4625 24 6 1.1566 -3.0553 -2.5768 25 6 0.4938 -3.0831 -3.7896 26 6 -0.7854 -2.5684 -3.8901 27 6 -1.4030 -2.0296 -2.7770 28 6 -0.7420 -2.0059 -1.5632 29 1 -0.4850 0.8400 0.0004 30 1 -0.3591 -3.5220 0.8472 31 1 -0.4079 -1.7498 1.0057 32 1 -0.6953 -2.8698 3.4401 33 1 0.6649 -5.0830 4.5085 34 1 2.3758 -4.6143 4.7597 35 1 2.0194 -4.1532 7.1003 36 1 0.9669 -5.5828 6.8485 37 1 -0.1134 -3.3374 7.8751 38 1 -1.0085 -4.2234 6.6025 39 1 0.1437 -1.0349 7.3111 40 1 2.1571 -3.4544 -2.4990 41 1 0.9762 -3.5043 -4.6592 42 1 -1.3021 -2.5876 -4.8382 43 1 -2.4025 -1.6279 -2.8555 44 1 -1.2246 -1.5854 -0.6935 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457360362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:58 Heat of formation + Delta-G solvation = -68.505526 kcal Electronic energy + Delta-G solvation = -25140.747246 eV Core-core repulsion = 21636.394522 eV Total energy + Delta-G solvation = -3504.352724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.57251 -38.44384 -37.64414 -35.10652 -34.16916 -32.94524 -31.04364 -29.81530 -28.76072 -27.85174 -27.18963 -25.45578 -22.60074 -21.45362 -21.00332 -20.38753 -19.96868 -19.17402 -17.10708 -16.64536 -15.99225 -15.94501 -15.58309 -15.01981 -14.88567 -14.55296 -13.97050 -13.82744 -13.56854 -13.13465 -12.88444 -12.65091 -12.54198 -12.34194 -12.19599 -11.75226 -11.66222 -11.42298 -11.24946 -11.15204 -10.88334 -10.73651 -10.68759 -10.55953 -10.35308 -10.16796 -10.00864 -9.92601 -9.28132 -9.17323 -8.67296 -8.46433 -8.35116 -7.79428 -7.42853 -5.97091 -4.04481 2.49402 2.58212 3.34138 3.39903 3.46759 3.68384 3.79124 4.25592 4.46616 4.54005 4.71269 4.88403 4.97826 5.27209 5.28018 5.43288 5.55485 5.57401 5.63982 5.74687 5.81405 5.88176 5.91330 5.95310 6.01809 6.10607 6.25641 6.40058 6.42974 6.49632 6.63626 6.74791 6.79271 7.12650 7.15271 7.20608 7.29245 7.51070 7.55936 7.61892 7.71879 7.99159 8.10781 8.20360 8.29912 8.39049 8.93189 9.27958 9.59135 10.97737 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.004368 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.528238 B = 6409.419220 C = 7342.817648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.469 4.469 8 H 0.060 0.940 9 C 0.088 3.912 10 H 0.036 0.964 11 C -0.140 4.140 12 C 0.527 3.473 13 O -0.526 6.526 14 N -0.742 5.742 15 C 0.148 3.852 16 H 0.099 0.901 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.154 4.154 20 C 0.093 3.907 21 H 0.062 0.938 22 O -0.559 6.559 23 C -0.031 4.031 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.154 4.154 27 C -0.144 4.144 28 C -0.076 4.076 29 H 0.260 0.740 30 H 0.050 0.950 31 H 0.137 0.863 32 H 0.392 0.608 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.375 0.625 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 -7.287 9.219 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.506 4.506 8 H 0.078 0.922 9 C 0.069 3.931 10 H 0.055 0.945 11 C -0.180 4.180 12 C 0.316 3.684 13 O -0.400 6.400 14 N -0.397 5.397 15 C 0.043 3.957 16 H 0.117 0.883 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.192 4.192 20 C 0.034 3.966 21 H 0.080 0.920 22 O -0.364 6.364 23 C -0.031 4.031 24 C -0.150 4.150 25 C -0.161 4.161 26 C -0.172 4.172 27 C -0.163 4.163 28 C -0.094 4.094 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.154 0.846 32 H 0.225 0.775 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.222 0.778 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.771 -7.200 8.772 12.311 hybrid contribution -0.523 1.257 0.263 1.386 sum -5.294 -5.943 9.035 12.041 Atomic orbital electron populations 1.69530 1.05722 1.26113 1.51745 1.24863 0.94894 0.99018 0.95142 0.86569 0.80167 0.83346 0.77932 1.20814 1.21394 1.19943 1.21019 0.93789 0.89602 1.46215 0.92170 1.17633 0.91984 0.97015 0.86483 0.94529 1.22008 1.01127 1.03236 0.91605 1.21153 0.88274 0.73617 0.85378 1.90606 1.14425 1.47895 1.87096 1.46261 1.09550 1.78174 1.05704 1.21266 0.96324 0.95896 0.82258 0.88327 1.22789 1.02555 0.96314 0.95322 1.22443 0.97710 0.99354 0.96331 1.23057 0.99085 0.97519 0.99550 1.22673 0.95618 0.86160 0.92183 0.92029 1.86601 1.49710 1.50412 1.49670 1.20372 0.93125 0.92863 0.96763 1.20931 0.99193 1.01876 0.92990 1.20803 0.95562 1.02692 0.97039 1.20781 0.95978 1.02730 0.97714 1.21084 0.99406 1.01676 0.94111 1.21623 0.94815 0.94905 0.98070 0.92913 0.93159 0.84619 0.77477 0.91079 0.90799 0.91185 0.91529 0.91113 0.90796 0.77844 0.87626 0.88078 0.88302 0.88078 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.80 7.74 55.43 0.43 -22.37 16 2 C 0.06 1.60 5.14 -17.82 -0.09 1.51 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.47 -12.75 7.27 -34.44 -0.25 -13.00 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 9 C 0.09 2.14 1.98 -92.92 -0.18 1.95 16 10 H 0.04 0.91 7.88 -51.93 -0.41 0.50 16 11 C -0.14 -3.01 4.22 -27.88 -0.12 -3.13 16 12 C 0.53 11.29 7.57 -10.99 -0.08 11.21 16 13 O -0.53 -13.30 14.66 5.56 0.08 -13.22 16 14 N -0.74 -12.41 5.04 -52.72 -0.27 -12.68 16 15 C 0.15 2.30 3.04 -66.81 -0.20 2.10 16 16 H 0.10 1.91 7.40 -51.93 -0.38 1.53 16 17 C -0.13 -1.73 6.54 -25.03 -0.16 -1.90 16 18 C -0.12 -1.25 6.91 -24.70 -0.17 -1.42 16 19 C -0.15 -1.43 6.56 -25.07 -0.16 -1.60 16 20 C 0.09 1.13 4.03 -25.61 -0.10 1.02 16 21 H 0.06 0.69 7.61 -51.93 -0.40 0.29 16 22 O -0.56 -7.20 13.21 -35.23 -0.47 -7.66 16 23 C -0.03 -0.70 4.68 -104.62 -0.49 -1.19 16 24 C -0.13 -2.83 9.70 -39.58 -0.38 -3.21 16 25 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 27 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 28 C -0.08 -1.67 7.56 -39.58 -0.30 -1.97 16 29 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.14 3.10 4.65 -51.92 -0.24 2.86 16 32 H 0.39 5.40 8.31 -40.82 -0.34 5.07 16 33 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.37 2.92 9.11 45.56 0.41 3.34 16 40 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 41 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.15 3.35 4.97 -52.49 -0.26 3.09 16 LS Contribution 351.96 15.07 5.30 5.30 Total: -1.00 -30.97 351.96 -9.64 -40.60 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.80 Total: 12.54 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -3.90 Total: -19.37 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.16 Total: -35.05 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.38 Total: -20.88 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.97 -9.64 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457360362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.901 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds