Wall clock time and date at job start Tue Mar 31 2020 08:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47138 * 240.00073 * 3 2 1 5 5 H 1.48506 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47532 * 119.99772 * 3 2 1 7 7 C 1.37879 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00264 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00174 * 270.00381 * 10 9 7 12 12 C 1.50702 * 109.47262 * 269.99872 * 11 10 9 13 13 C 1.34519 * 125.78832 * 89.99690 * 12 11 10 14 14 C 1.41383 * 106.83987 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84053 * 0.02562 * 14 13 12 16 16 O 1.34299 * 125.78807 * 269.69762 * 12 11 10 17 17 C 1.34776 * 119.99342 * 90.00558 * 10 9 7 18 18 O 1.21279 * 120.00459 * 359.97438 * 17 10 9 19 19 C 1.50703 * 119.99466 * 180.02562 * 17 10 9 20 20 C 1.53952 * 113.57643 * 179.97438 * 19 17 10 21 21 C 1.52906 * 86.78292 * 139.41476 * 20 19 17 22 22 C 1.52913 * 121.13846 * 100.81627 * 21 20 19 23 23 C 1.53952 * 86.78179 * 100.82243 * 22 21 20 24 24 C 1.53068 * 121.06931 * 209.35994 * 21 20 19 25 25 C 1.52911 * 88.04026 * 335.10071 * 21 20 19 26 26 H 0.97001 * 119.99704 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46564 * 60.00075 * 9 7 2 28 28 H 1.08997 * 109.47022 * 300.00803 * 9 7 2 29 29 H 1.08998 * 109.47264 * 30.00185 * 11 10 9 30 30 H 1.09002 * 109.46891 * 149.99986 * 11 10 9 31 31 H 1.07996 * 126.57797 * 359.96996 * 13 12 11 32 32 H 1.07997 * 126.57791 * 179.97438 * 14 13 12 33 33 H 1.07993 * 125.79238 * 180.02562 * 15 14 13 34 34 H 1.08999 * 112.82769 * 48.91216 * 19 17 10 35 35 H 1.08999 * 113.66546 * 24.94401 * 20 19 17 36 36 H 1.09003 * 113.65863 * 253.88138 * 20 19 17 37 37 H 1.09000 * 113.66161 * 346.35132 * 22 21 20 38 38 H 1.09004 * 113.74945 * 215.30259 * 22 21 20 39 39 H 1.09002 * 113.58142 * 139.33940 * 23 22 21 40 40 H 1.09004 * 113.57653 * 270.05541 * 23 22 21 41 41 H 1.09003 * 113.66420 * 144.67806 * 24 21 20 42 42 H 1.09001 * 113.71350 * 13.57398 * 24 21 20 43 43 H 1.09005 * 113.66371 * 139.37856 * 25 21 20 44 44 H 1.08999 * 113.66122 * 270.42255 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7622 -5.2837 -1.7043 13 6 0.6697 -5.1470 -2.4770 14 6 0.1143 -6.4378 -2.6331 15 6 0.9003 -7.2859 -1.9460 16 8 1.9008 -6.5823 -1.3911 17 6 2.6406 -4.1250 1.1667 18 8 2.2468 -3.6638 2.2170 19 6 3.6203 -5.2701 1.1668 20 6 4.0207 -5.7379 2.5778 21 6 3.9345 -7.1649 2.0356 22 6 5.1932 -7.9384 1.6411 23 6 5.0678 -8.6617 2.9943 24 6 3.5639 -8.3360 2.9490 25 6 2.9600 -6.6477 0.9767 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.6868 -3.3879 -2.0288 30 1 3.6884 -4.5596 -1.1387 31 1 0.2892 -4.2275 -2.8968 32 1 -0.7716 -6.6935 -3.1954 33 1 0.7552 -8.3526 -1.8602 34 1 4.4708 -5.0991 0.5068 35 1 3.2753 -5.5141 3.3409 36 1 5.0285 -5.4403 2.8677 37 1 6.0829 -7.3139 1.5597 38 1 5.0546 -8.5930 0.7806 39 1 5.2848 -9.7286 2.9402 40 1 5.5977 -8.1631 3.8060 41 1 2.9650 -9.1023 2.4567 42 1 3.1536 -8.0288 3.9110 43 1 3.1203 -7.0771 -0.0123 44 1 1.9165 -6.6797 1.2898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517374776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:53 Heat of formation + Delta-G solvation = 25.734568 kcal Electronic energy + Delta-G solvation = -25653.750423 eV Core-core repulsion = 22153.484256 eV Total energy + Delta-G solvation = -3500.266166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31508 -40.58791 -38.47474 -35.21440 -34.41526 -32.80957 -32.57568 -30.09949 -27.78546 -25.85578 -25.67107 -25.56708 -24.91434 -22.77734 -21.45769 -21.10770 -20.40666 -18.40222 -17.94388 -17.13804 -16.69752 -16.28313 -15.84414 -15.36111 -15.27458 -15.09641 -14.58626 -14.33972 -13.72995 -13.65746 -12.82006 -12.76387 -12.56187 -12.51274 -12.42748 -12.21522 -12.04090 -11.91164 -11.88333 -11.46194 -11.20293 -10.99145 -10.87786 -10.71655 -10.56274 -10.18479 -10.15640 -9.96382 -9.82963 -9.69839 -9.59566 -8.76694 -8.43612 -8.26732 -7.76107 -6.04339 -4.09378 1.94096 2.86048 3.12232 3.31901 3.36640 3.38977 3.52160 4.01246 4.43890 4.46176 4.55722 4.66067 4.79392 4.86504 4.94978 5.03166 5.16168 5.28775 5.29394 5.43566 5.44380 5.45781 5.61603 5.66275 5.68620 5.83738 5.90232 5.91918 5.95297 6.03348 6.06807 6.08716 6.16023 6.22060 6.33664 6.51001 6.51930 6.63332 6.75291 7.05333 7.35626 7.45661 7.53424 7.91875 8.22641 8.37377 8.89949 9.09534 9.55820 11.03775 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004987 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.967123 B = 5613.058089 C = 7162.989085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.247 3.753 10 N -0.593 5.593 11 C 0.192 3.808 12 C -0.024 4.024 13 C -0.196 4.196 14 C -0.213 4.213 15 C -0.056 4.056 16 O -0.167 6.167 17 C 0.519 3.481 18 O -0.535 6.535 19 C -0.137 4.137 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.139 4.139 24 C -0.128 4.128 25 C -0.103 4.103 26 H 0.264 0.736 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.195 0.805 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.125 -18.235 -2.795 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C 0.128 3.872 10 N -0.324 5.324 11 C 0.067 3.933 12 C -0.075 4.075 13 C -0.216 4.216 14 C -0.232 4.232 15 C -0.124 4.124 16 O -0.063 6.063 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.158 4.158 20 C -0.127 4.127 21 C -0.108 4.108 22 C -0.153 4.153 23 C -0.177 4.177 24 C -0.165 4.165 25 C -0.140 4.140 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.101 0.899 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.212 0.788 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.969 -17.930 -2.043 19.345 hybrid contribution 0.032 1.010 -0.336 1.065 sum 7.002 -16.920 -2.379 18.465 Atomic orbital electron populations 1.69931 1.05999 1.27113 1.50229 1.24926 0.94860 0.99173 0.95029 0.86566 0.79524 0.82738 0.78633 1.20220 1.21199 1.20186 1.21394 0.93330 0.90606 1.51341 0.92427 1.19293 0.87469 0.81957 0.98507 1.48288 1.46190 1.34492 1.03439 1.19852 0.94115 0.90522 0.88795 1.23270 1.00626 0.83067 1.00527 1.21688 0.97213 0.98825 1.03900 1.21798 1.02781 0.93288 1.05310 1.23937 0.90304 0.97826 1.00309 1.84192 1.44011 1.18587 1.59494 1.20261 0.82093 0.83158 0.83903 1.90651 1.58400 1.61200 1.30957 1.22729 0.98875 0.94278 0.99927 1.22540 1.02028 0.92254 0.95926 1.22498 0.96865 0.93976 0.97437 1.22635 0.96907 0.98396 0.97355 1.22804 0.97023 0.99947 0.97877 1.22760 0.96204 0.97788 0.99749 1.22819 0.98436 0.93407 0.99372 0.92665 0.94966 0.93921 0.86911 0.89857 0.83434 0.83995 0.78791 0.87804 0.88548 0.91401 0.91473 0.89998 0.91871 0.90373 0.90237 0.91472 0.89330 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 10 N -0.59 -12.55 2.44 -176.44 -0.43 -12.98 16 11 C 0.19 3.15 5.74 -5.20 -0.03 3.12 16 12 C -0.02 -0.37 6.70 -35.62 -0.24 -0.61 16 13 C -0.20 -3.05 10.81 -39.70 -0.43 -3.48 16 14 C -0.21 -2.81 10.91 -39.70 -0.43 -3.24 16 15 C -0.06 -0.67 12.09 29.42 0.36 -0.32 16 16 O -0.17 -2.32 6.43 5.70 0.04 -2.28 16 17 C 0.52 10.98 7.20 -10.98 -0.08 10.90 16 18 O -0.54 -13.74 15.47 5.56 0.09 -13.65 16 19 C -0.14 -2.14 2.95 -90.79 -0.27 -2.41 16 20 C -0.09 -1.30 7.17 -26.28 -0.19 -1.49 16 21 C -0.11 -1.28 1.11 -154.63 -0.17 -1.45 16 22 C -0.12 -1.14 7.84 -26.28 -0.21 -1.34 16 23 C -0.14 -1.28 8.08 -25.75 -0.21 -1.49 16 24 C -0.13 -1.35 7.85 -26.20 -0.21 -1.55 16 25 C -0.10 -1.41 5.67 -26.28 -0.15 -1.56 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 29 H 0.11 1.82 8.07 -51.93 -0.42 1.40 16 30 H 0.08 1.15 6.22 -51.93 -0.32 0.82 16 31 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.10 1.44 6.95 -51.93 -0.36 1.08 16 35 H 0.10 1.60 7.42 -51.93 -0.39 1.21 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.13 5.53 -51.93 -0.29 0.84 16 44 H 0.08 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 357.68 15.07 5.39 5.39 Total: -1.00 -32.74 357.68 -8.67 -41.42 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.77 Total: 3.11 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.70 Total: -11.97 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.31 Total: -38.75 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.12 Total: -15.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.74 -8.67 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517374776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.153 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds