Wall clock time and date at job start Tue Mar 31 2020 08:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00292 * 2 1 4 4 H 1.48504 * 109.47138 * 240.00073 * 3 2 1 5 5 H 1.48506 * 109.47301 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47532 * 119.99772 * 3 2 1 7 7 C 1.37879 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00246 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00264 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.46494 * 120.00174 * 270.00381 * 10 9 7 12 12 C 1.50702 * 109.47262 * 269.99872 * 11 10 9 13 13 C 1.34519 * 125.78832 * 89.99690 * 12 11 10 14 14 C 1.41383 * 106.83987 * 180.02562 * 13 12 11 15 15 C 1.34516 * 106.84053 * 0.02562 * 14 13 12 16 16 O 1.34299 * 125.78807 * 269.69762 * 12 11 10 17 17 C 1.34776 * 119.99342 * 90.00558 * 10 9 7 18 18 O 1.21279 * 120.00459 * 359.97438 * 17 10 9 19 19 C 1.50703 * 119.99466 * 180.02562 * 17 10 9 20 20 C 1.53952 * 113.57643 * 179.97438 * 19 17 10 21 21 C 1.52906 * 86.78292 * 139.41476 * 20 19 17 22 22 C 1.52913 * 121.13846 * 100.81627 * 21 20 19 23 23 C 1.53952 * 86.78179 * 100.82243 * 22 21 20 24 24 C 1.53068 * 121.06931 * 209.35994 * 21 20 19 25 25 C 1.52911 * 88.04026 * 335.10071 * 21 20 19 26 26 H 0.97001 * 119.99704 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46564 * 60.00075 * 9 7 2 28 28 H 1.08997 * 109.47022 * 300.00803 * 9 7 2 29 29 H 1.08998 * 109.47264 * 30.00185 * 11 10 9 30 30 H 1.09002 * 109.46891 * 149.99986 * 11 10 9 31 31 H 1.07996 * 126.57797 * 359.96996 * 13 12 11 32 32 H 1.07997 * 126.57791 * 179.97438 * 14 13 12 33 33 H 1.07993 * 125.79238 * 180.02562 * 15 14 13 34 34 H 1.08999 * 112.82769 * 48.91216 * 19 17 10 35 35 H 1.08999 * 113.66546 * 24.94401 * 20 19 17 36 36 H 1.09003 * 113.65863 * 253.88138 * 20 19 17 37 37 H 1.09000 * 113.66161 * 346.35132 * 22 21 20 38 38 H 1.09004 * 113.74945 * 215.30259 * 22 21 20 39 39 H 1.09002 * 113.58142 * 139.33940 * 23 22 21 40 40 H 1.09004 * 113.57653 * 270.05541 * 23 22 21 41 41 H 1.09003 * 113.66420 * 144.67806 * 24 21 20 42 42 H 1.09001 * 113.71350 * 13.57398 * 24 21 20 43 43 H 1.09005 * 113.66371 * 139.37856 * 25 21 20 44 44 H 1.08999 * 113.66122 * 270.42255 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 2.6790 -4.1695 -1.2692 12 6 1.7622 -5.2837 -1.7043 13 6 0.6697 -5.1470 -2.4770 14 6 0.1143 -6.4378 -2.6331 15 6 0.9003 -7.2859 -1.9460 16 8 1.9008 -6.5823 -1.3911 17 6 2.6406 -4.1250 1.1667 18 8 2.2468 -3.6638 2.2170 19 6 3.6203 -5.2701 1.1668 20 6 4.0207 -5.7379 2.5778 21 6 3.9345 -7.1649 2.0356 22 6 5.1932 -7.9384 1.6411 23 6 5.0678 -8.6617 2.9943 24 6 3.5639 -8.3360 2.9490 25 6 2.9600 -6.6477 0.9767 26 1 -0.4850 0.8401 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.6868 -3.3879 -2.0288 30 1 3.6884 -4.5596 -1.1387 31 1 0.2892 -4.2275 -2.8968 32 1 -0.7716 -6.6935 -3.1954 33 1 0.7552 -8.3526 -1.8602 34 1 4.4708 -5.0991 0.5068 35 1 3.2753 -5.5141 3.3409 36 1 5.0285 -5.4403 2.8677 37 1 6.0829 -7.3139 1.5597 38 1 5.0546 -8.5930 0.7806 39 1 5.2848 -9.7286 2.9402 40 1 5.5977 -8.1631 3.8060 41 1 2.9650 -9.1023 2.4567 42 1 3.1536 -8.0288 3.9110 43 1 3.1203 -7.0771 -0.0123 44 1 1.9165 -6.6797 1.2898 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517374776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:52 Heat of formation + Delta-G solvation = 7.530073 kcal Electronic energy + Delta-G solvation = -25654.539829 eV Core-core repulsion = 22153.484256 eV Total energy + Delta-G solvation = -3501.055573 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.42040 -41.76292 -39.95022 -36.91855 -35.57613 -34.77377 -33.80518 -31.51789 -29.64225 -26.99808 -26.77514 -26.62542 -26.41893 -24.39256 -22.56048 -22.35101 -21.55218 -19.87325 -19.00748 -18.66706 -18.32500 -17.74440 -17.37054 -16.65442 -16.44267 -16.34902 -16.05998 -15.68934 -15.15741 -15.03074 -14.39421 -13.98974 -13.93738 -13.70439 -13.55954 -13.51890 -13.39266 -13.34172 -13.05706 -12.92006 -12.79204 -12.64690 -12.47836 -12.22350 -11.87349 -11.78988 -11.69710 -11.13132 -10.95730 -10.87265 -10.72197 -10.64938 -10.35016 -9.66711 -9.33343 -8.23316 -6.38298 0.80687 1.36661 1.41130 1.48288 1.68848 1.75948 2.17604 2.36163 2.49540 3.06799 3.48335 3.52316 3.61678 3.77293 3.82422 3.89407 4.02117 4.02248 4.20186 4.24001 4.37413 4.43473 4.62590 4.63541 4.77700 4.84041 4.91784 4.95229 4.97224 4.98244 5.05965 5.08762 5.10733 5.15805 5.17495 5.20434 5.36850 5.42957 5.51293 5.60860 5.65804 5.66719 5.79912 6.04036 6.27285 6.65251 6.72826 7.26425 7.43354 8.84269 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013596 B = 0.004987 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.967123 B = 5613.058089 C = 7162.989085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.265 3.735 10 N -0.597 5.597 11 C 0.191 3.809 12 C -0.041 4.041 13 C -0.215 4.215 14 C -0.231 4.231 15 C -0.035 4.035 16 O -0.166 6.166 17 C 0.508 3.492 18 O -0.595 6.595 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.092 4.092 26 H 0.267 0.733 27 H 0.022 0.978 28 H -0.010 1.010 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.163 0.837 33 H 0.242 0.758 34 H 0.132 0.868 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 -20.595 -4.016 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.326 5.326 11 C 0.068 3.932 12 C -0.092 4.092 13 C -0.235 4.235 14 C -0.250 4.250 15 C -0.102 4.102 16 O -0.062 6.062 17 C 0.298 3.702 18 O -0.476 6.476 19 C -0.153 4.153 20 C -0.133 4.133 21 C -0.101 4.101 22 C -0.144 4.144 23 C -0.169 4.169 24 C -0.169 4.169 25 C -0.129 4.129 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.009 0.991 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.152 0.848 32 H 0.180 0.820 33 H 0.258 0.742 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.292 -20.323 -3.308 22.590 hybrid contribution -0.790 1.681 0.041 1.858 sum 8.502 -18.642 -3.267 20.748 Atomic orbital electron populations 1.70063 1.07684 1.28222 1.50887 1.25873 0.95759 1.03095 0.94325 0.85456 0.78286 0.77924 0.79081 1.18161 1.20464 1.20365 1.21673 0.93408 0.91667 1.51424 0.92430 1.18695 0.87843 0.83676 0.95351 1.48268 1.45193 1.33473 1.05699 1.20009 0.95863 0.90969 0.86373 1.22886 1.00922 0.83763 1.01648 1.21867 0.97685 0.99733 1.04204 1.22081 1.04069 0.92301 1.06561 1.24827 0.88367 0.99372 0.97684 1.84161 1.44714 1.17735 1.59550 1.21348 0.82226 0.83813 0.82803 1.90611 1.60645 1.63310 1.33002 1.22871 0.98255 0.92579 1.01593 1.22511 1.01665 0.94632 0.94523 1.22462 0.97945 0.92983 0.96732 1.22674 0.95429 0.98027 0.98223 1.22780 0.95407 1.01126 0.97606 1.22834 0.97738 0.97344 0.98963 1.22734 0.97353 0.91945 1.00903 0.92429 0.96041 0.99147 0.87169 0.86540 0.84792 0.81977 0.74198 0.85060 0.91693 0.90129 0.90793 0.88230 0.90004 0.90474 0.88996 0.92632 0.87520 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 4 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 8 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.27 14.74 5.16 85.63 0.44 15.18 16 10 N -0.60 -26.28 2.44 -830.51 -2.03 -28.31 16 11 C 0.19 6.25 5.74 85.63 0.49 6.74 16 12 C -0.04 -1.26 6.70 24.83 0.17 -1.09 16 13 C -0.21 -6.73 10.81 22.19 0.24 -6.49 16 14 C -0.23 -5.72 10.91 22.19 0.24 -5.48 16 15 C -0.04 -0.73 12.09 66.97 0.81 0.08 16 16 O -0.17 -4.21 6.43 -2.53 -0.02 -4.22 16 17 C 0.51 22.39 7.20 87.66 0.63 23.02 16 18 O -0.59 -32.65 15.47 -3.02 -0.05 -32.70 16 19 C -0.13 -4.04 2.95 -10.90 -0.03 -4.07 16 20 C -0.10 -2.74 7.17 30.88 0.22 -2.52 16 21 C -0.10 -2.19 1.11 -52.26 -0.06 -2.25 16 22 C -0.11 -1.65 7.84 30.89 0.24 -1.41 16 23 C -0.13 -1.97 8.08 31.23 0.25 -1.72 16 24 C -0.13 -2.48 7.85 30.94 0.24 -2.24 16 25 C -0.09 -2.37 5.67 30.88 0.17 -2.19 16 26 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 28 H -0.01 -0.63 7.42 -2.39 -0.02 -0.64 16 29 H 0.11 3.62 8.07 -2.39 -0.02 3.60 16 30 H 0.12 2.98 6.22 -2.39 -0.01 2.97 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 32 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 33 H 0.24 2.56 8.06 -2.91 -0.02 2.54 16 34 H 0.13 3.30 6.95 -2.39 -0.02 3.28 16 35 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 2.35 5.53 -2.38 -0.01 2.34 16 44 H 0.05 1.67 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -76.47 357.68 5.97 -70.49 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.98 Total: 19.16 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.77 Total: -14.87 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.74 Total: -85.09 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.06 Total: -36.92 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -76.47 5.97 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517374776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.022 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds