Wall clock time and date at job start Tue Mar 31 2020 08:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99775 * 161.47550 * 7 2 1 9 9 C 1.41402 * 120.00127 * 341.47866 * 7 2 1 10 10 C 1.40720 * 120.24135 * 335.88967 * 9 7 2 11 11 C 1.37619 * 119.74433 * 179.74571 * 10 9 7 12 12 C 1.38635 * 120.24325 * 0.53509 * 11 10 9 13 13 C 1.50708 * 119.74536 * 179.71589 * 12 11 10 14 14 N 1.46494 * 109.47154 * 270.02211 * 13 12 11 15 15 C 1.34778 * 120.00298 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99592 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.46715 * 60.00018 * 17 15 14 19 19 C 1.52999 * 109.47354 * 300.00290 * 17 15 14 20 20 C 1.53000 * 109.47239 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.47278 * 59.99652 * 20 19 17 22 22 C 1.52996 * 109.46937 * 300.00191 * 21 20 19 23 23 H 1.08999 * 109.47267 * 300.00195 * 22 21 20 24 24 O 1.42902 * 109.47141 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47416 * 60.00192 * 22 21 20 26 26 C 1.38630 * 120.50538 * 359.73785 * 12 11 10 27 27 C 1.37615 * 120.24726 * 359.97438 * 26 12 11 28 28 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.12638 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.87455 * 180.27215 * 11 10 9 31 31 H 1.08997 * 109.47223 * 30.02143 * 13 12 11 32 32 H 1.08996 * 109.46520 * 150.02062 * 13 12 11 33 33 H 0.97003 * 120.00182 * 359.97438 * 14 13 12 34 34 H 1.09002 * 109.46719 * 300.00003 * 19 17 15 35 35 H 1.09002 * 109.47262 * 59.99475 * 19 17 15 36 36 H 1.08997 * 109.47035 * 179.97438 * 20 19 17 37 37 H 1.08999 * 109.46657 * 299.99622 * 20 19 17 38 38 H 1.09002 * 109.47074 * 59.99897 * 21 20 19 39 39 H 1.08997 * 109.47160 * 180.02562 * 21 20 19 40 40 H 0.96705 * 113.99510 * 60.00330 * 24 22 21 41 41 H 1.09001 * 109.47647 * 179.97438 * 25 22 21 42 42 H 1.09002 * 109.47396 * 59.99803 * 25 22 21 43 43 H 1.08005 * 119.87877 * 179.97438 * 26 12 11 44 44 H 1.08005 * 120.12998 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2362 -0.2966 9 6 1.3560 -2.4047 0.3901 10 6 0.2297 -2.3542 1.2321 11 6 -0.4001 -3.5209 1.6006 12 6 0.0777 -4.7434 1.1544 13 6 -0.6169 -6.0147 1.5701 14 7 -0.0235 -6.5110 2.8141 15 6 -0.4880 -7.6441 3.3771 16 8 -1.3968 -8.2530 2.8536 17 6 0.1228 -8.1550 4.6565 18 1 0.0068 -7.4053 5.4392 19 6 1.6106 -8.4352 4.4352 20 6 2.2305 -8.9546 5.7340 21 6 1.5255 -10.2455 6.1551 22 6 0.0378 -9.9653 6.3764 23 1 -0.0782 -9.2159 7.1594 24 8 -0.6208 -11.1711 6.7692 25 6 -0.5822 -9.4460 5.0776 26 6 1.1899 -4.8055 0.3291 27 6 1.8320 -3.6511 -0.0568 28 1 -0.4850 0.8400 0.0004 29 1 -0.1411 -1.4031 1.5849 30 1 -1.2673 -3.4843 2.2432 31 1 -1.6768 -5.8148 1.7275 32 1 -0.5009 -6.7645 0.7876 33 1 0.7042 -6.0247 3.2322 34 1 1.7265 -9.1849 3.6524 35 1 2.1127 -7.5156 4.1347 36 1 3.2903 -9.1546 5.5761 37 1 2.1145 -8.2052 6.5169 38 1 1.6415 -10.9949 5.3720 39 1 1.9669 -10.6153 7.0806 40 1 -0.2785 -11.5578 7.5868 41 1 -1.6422 -9.2468 5.2352 42 1 -0.4662 -10.1954 4.2946 43 1 1.5538 -5.7634 -0.0122 44 1 2.6981 -3.7017 -0.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518194801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:48 Heat of formation + Delta-G solvation = -102.869041 kcal Electronic energy + Delta-G solvation = -23914.202811 eV Core-core repulsion = 20408.359974 eV Total energy + Delta-G solvation = -3505.842837 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.17998 -38.44835 -37.62935 -35.67451 -34.74859 -33.44432 -31.37218 -30.39633 -29.60048 -29.35543 -26.92631 -24.34559 -23.08017 -22.52625 -21.10413 -20.54621 -20.13961 -19.73239 -17.73069 -17.41627 -16.76267 -15.75674 -15.48239 -15.37080 -14.96383 -14.75419 -14.35442 -14.06230 -14.04057 -13.63974 -13.38548 -13.08688 -12.76577 -12.62154 -12.53650 -12.06502 -11.91823 -11.84776 -11.61428 -11.37189 -11.22268 -11.14103 -11.09242 -10.89246 -10.65114 -10.62573 -10.55662 -10.04897 -9.75220 -9.54322 -9.48947 -9.23108 -8.65357 -7.59572 -7.47884 -6.89725 -4.48424 2.54615 2.86495 2.95715 2.99780 3.01658 3.06054 3.55348 3.83378 4.00639 4.42598 4.43367 4.55276 4.72690 4.86959 4.89374 5.02460 5.11769 5.21064 5.31223 5.35255 5.57499 5.67515 5.74138 5.77350 5.83013 5.89645 5.90301 5.92183 6.10166 6.20059 6.22878 6.29039 6.33874 6.83311 6.84387 6.95574 7.16129 7.24220 7.39449 7.48821 7.67826 7.91416 7.93439 7.99699 8.17049 8.50214 8.52342 8.76503 8.84321 10.04461 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002503 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.669050 B =11184.357334 C =11526.459082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.116 3.884 10 C -0.170 4.170 11 C -0.081 4.081 12 C -0.245 4.245 13 C 0.183 3.817 14 N -0.716 5.716 15 C 0.510 3.490 16 O -0.550 6.550 17 C -0.104 4.104 18 H 0.097 0.903 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.153 4.153 22 C 0.105 3.895 23 H 0.055 0.945 24 O -0.567 6.567 25 C -0.091 4.091 26 C -0.069 4.069 27 C -0.230 4.230 28 H 0.282 0.718 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.375 0.625 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 -12.265 12.450 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.190 4.190 11 C -0.100 4.100 12 C -0.247 4.247 13 C 0.062 3.938 14 N -0.367 5.367 15 C 0.296 3.704 16 O -0.428 6.428 17 C -0.126 4.126 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.191 4.191 22 C 0.046 3.954 23 H 0.073 0.927 24 O -0.372 6.372 25 C -0.129 4.129 26 C -0.088 4.088 27 C -0.250 4.250 28 H 0.093 0.907 29 H 0.136 0.864 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.222 0.778 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.472 -12.405 11.476 17.079 hybrid contribution 1.006 1.043 0.594 1.566 sum 3.477 -11.362 12.070 16.937 Atomic orbital electron populations 1.69836 1.07679 1.29426 1.34081 1.25967 0.94735 1.01534 0.92112 0.86259 0.81039 0.80782 0.78686 1.18302 1.19885 1.19595 1.19688 0.98486 0.91363 1.39152 0.90227 1.17674 0.90837 0.92054 0.88075 1.21309 0.99554 0.96808 1.01309 1.20556 0.98026 0.92591 0.98811 1.18978 1.02565 0.92582 1.10581 1.19943 0.95986 0.93579 0.84327 1.46528 1.38233 1.25244 1.26671 1.20498 0.83104 0.80883 0.85924 1.90680 1.30086 1.57805 1.64273 1.21262 0.96283 0.98599 0.96420 0.88527 1.21581 0.93026 1.02266 0.98335 1.21469 0.99638 0.96816 0.97338 1.22302 0.95928 0.98774 1.02070 1.21826 0.90761 0.86208 0.96607 0.92706 1.86547 1.62878 1.41308 1.46467 1.21210 1.00056 0.95763 0.95880 1.20399 0.94930 0.96485 0.97005 1.20959 1.04028 0.92782 1.07211 0.90699 0.86435 0.89427 0.92387 0.92465 0.76588 0.91127 0.90734 0.91167 0.91507 0.90979 0.91779 0.77786 0.90558 0.90468 0.89420 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.59 10.98 55.55 0.61 -18.98 16 2 C 0.08 1.82 5.13 -17.34 -0.09 1.73 16 3 Si 0.91 17.87 29.60 -169.99 -5.03 12.83 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.46 -11.63 9.05 -37.74 -0.34 -11.97 16 8 H 0.08 1.95 7.91 -52.49 -0.42 1.53 16 9 C 0.12 2.96 5.58 -106.82 -0.60 2.36 16 10 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 11 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 12 C -0.25 -5.00 5.27 -104.33 -0.55 -5.55 16 13 C 0.18 3.29 5.79 -5.19 -0.03 3.26 16 14 N -0.72 -10.92 5.44 -61.48 -0.33 -11.26 16 15 C 0.51 7.75 7.15 -10.99 -0.08 7.67 16 16 O -0.55 -10.49 15.98 5.56 0.09 -10.40 16 17 C -0.10 -1.15 2.53 -91.77 -0.23 -1.39 16 18 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 19 C -0.11 -1.07 5.10 -26.73 -0.14 -1.20 16 20 C -0.11 -0.85 5.92 -26.73 -0.16 -1.01 16 21 C -0.15 -1.15 5.55 -26.73 -0.15 -1.30 16 22 C 0.10 0.95 3.47 -26.73 -0.09 0.86 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 O -0.57 -5.46 13.32 -35.23 -0.47 -5.93 16 25 C -0.09 -1.07 4.14 -26.73 -0.11 -1.18 16 26 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 27 C -0.23 -5.36 9.80 -38.88 -0.38 -5.74 16 28 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 29 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 32 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.40 5.47 7.88 -40.82 -0.32 5.15 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.67 7.56 -51.93 -0.39 0.28 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 1.86 9.08 45.56 0.41 2.28 16 41 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 42 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 43 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.23 359.56 -9.85 -39.08 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -6.08 Total: 11.26 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -4.05 Total: -22.01 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.28 Total: -30.24 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.38 Total: -16.34 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.23 -9.85 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518194801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.792 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds