Wall clock time and date at job start Tue Mar 31 2020 08:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47403 * 299.99826 * 3 2 1 6 6 H 1.48503 * 109.47061 * 60.00061 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99775 * 161.47550 * 7 2 1 9 9 C 1.41402 * 120.00127 * 341.47866 * 7 2 1 10 10 C 1.40720 * 120.24135 * 335.88967 * 9 7 2 11 11 C 1.37619 * 119.74433 * 179.74571 * 10 9 7 12 12 C 1.38635 * 120.24325 * 0.53509 * 11 10 9 13 13 C 1.50708 * 119.74536 * 179.71589 * 12 11 10 14 14 N 1.46494 * 109.47154 * 270.02211 * 13 12 11 15 15 C 1.34778 * 120.00298 * 180.02562 * 14 13 12 16 16 O 1.21280 * 119.99592 * 0.02562 * 15 14 13 17 17 C 1.50698 * 120.00337 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.46715 * 60.00018 * 17 15 14 19 19 C 1.52999 * 109.47354 * 300.00290 * 17 15 14 20 20 C 1.53000 * 109.47239 * 180.02562 * 19 17 15 21 21 C 1.53002 * 109.47278 * 59.99652 * 20 19 17 22 22 C 1.52996 * 109.46937 * 300.00191 * 21 20 19 23 23 H 1.08999 * 109.47267 * 300.00195 * 22 21 20 24 24 O 1.42902 * 109.47141 * 179.97438 * 22 21 20 25 25 C 1.53000 * 109.47416 * 60.00192 * 22 21 20 26 26 C 1.38630 * 120.50538 * 359.73785 * 12 11 10 27 27 C 1.37615 * 120.24726 * 359.97438 * 26 12 11 28 28 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.12638 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.87455 * 180.27215 * 11 10 9 31 31 H 1.08997 * 109.47223 * 30.02143 * 13 12 11 32 32 H 1.08996 * 109.46520 * 150.02062 * 13 12 11 33 33 H 0.97003 * 120.00182 * 359.97438 * 14 13 12 34 34 H 1.09002 * 109.46719 * 300.00003 * 19 17 15 35 35 H 1.09002 * 109.47262 * 59.99475 * 19 17 15 36 36 H 1.08997 * 109.47035 * 179.97438 * 20 19 17 37 37 H 1.08999 * 109.46657 * 299.99622 * 20 19 17 38 38 H 1.09002 * 109.47074 * 59.99897 * 21 20 19 39 39 H 1.08997 * 109.47160 * 180.02562 * 21 20 19 40 40 H 0.96705 * 113.99510 * 60.00330 * 24 22 21 41 41 H 1.09001 * 109.47647 * 179.97438 * 25 22 21 42 42 H 1.09002 * 109.47396 * 59.99803 * 25 22 21 43 43 H 1.08005 * 119.87877 * 179.97438 * 26 12 11 44 44 H 1.08005 * 120.12998 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2362 -0.2966 9 6 1.3560 -2.4047 0.3901 10 6 0.2297 -2.3542 1.2321 11 6 -0.4001 -3.5209 1.6006 12 6 0.0777 -4.7434 1.1544 13 6 -0.6169 -6.0147 1.5701 14 7 -0.0235 -6.5110 2.8141 15 6 -0.4880 -7.6441 3.3771 16 8 -1.3968 -8.2530 2.8536 17 6 0.1228 -8.1550 4.6565 18 1 0.0068 -7.4053 5.4392 19 6 1.6106 -8.4352 4.4352 20 6 2.2305 -8.9546 5.7340 21 6 1.5255 -10.2455 6.1551 22 6 0.0378 -9.9653 6.3764 23 1 -0.0782 -9.2159 7.1594 24 8 -0.6208 -11.1711 6.7692 25 6 -0.5822 -9.4460 5.0776 26 6 1.1899 -4.8055 0.3291 27 6 1.8320 -3.6511 -0.0568 28 1 -0.4850 0.8400 0.0004 29 1 -0.1411 -1.4031 1.5849 30 1 -1.2673 -3.4843 2.2432 31 1 -1.6768 -5.8148 1.7275 32 1 -0.5009 -6.7645 0.7876 33 1 0.7042 -6.0247 3.2322 34 1 1.7265 -9.1849 3.6524 35 1 2.1127 -7.5156 4.1347 36 1 3.2903 -9.1546 5.5761 37 1 2.1145 -8.2052 6.5169 38 1 1.6415 -10.9949 5.3720 39 1 1.9669 -10.6153 7.0806 40 1 -0.2785 -11.5578 7.5868 41 1 -1.6422 -9.2468 5.2352 42 1 -0.4662 -10.1954 4.2946 43 1 1.5538 -5.7634 -0.0122 44 1 2.6981 -3.7017 -0.7001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518194801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:47 Heat of formation + Delta-G solvation = -121.370064 kcal Electronic energy + Delta-G solvation = -23915.005076 eV Core-core repulsion = 20408.359974 eV Total energy + Delta-G solvation = -3506.645102 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28130 -39.66839 -39.08234 -36.46138 -36.32469 -35.07749 -32.43911 -31.75380 -31.18019 -30.46532 -28.52666 -25.77384 -24.25237 -23.25802 -22.90599 -21.83925 -21.50930 -20.71086 -19.24717 -18.68355 -17.71914 -17.24632 -16.88594 -16.51513 -16.14424 -15.81086 -15.57357 -15.42237 -15.31581 -14.95477 -14.51138 -14.28064 -14.16860 -13.84261 -13.62433 -13.50000 -13.34696 -13.23203 -12.96447 -12.74954 -12.59652 -12.40243 -12.17864 -12.14358 -11.78391 -11.61671 -11.49690 -11.41773 -11.30524 -11.05715 -10.82542 -10.62263 -10.02691 -9.40380 -9.29264 -8.68264 -6.37190 0.83662 1.12885 1.38886 1.46448 1.53993 1.64693 2.19444 2.30509 2.74765 3.27552 3.58735 3.70219 3.74608 3.99949 4.10346 4.14986 4.16900 4.29849 4.30161 4.38649 4.47260 4.50943 4.53340 4.63690 4.64618 4.81452 5.01944 5.03962 5.09352 5.13846 5.14334 5.16646 5.21931 5.28124 5.34420 5.42036 5.46056 5.50836 5.67757 5.90659 6.08105 6.19636 6.35299 6.64063 6.67263 6.91183 6.94147 7.00036 7.27728 8.28651 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.002503 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.669050 B =11184.357334 C =11526.459082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.192 4.192 11 C -0.082 4.082 12 C -0.227 4.227 13 C 0.192 3.808 14 N -0.709 5.709 15 C 0.509 3.491 16 O -0.592 6.592 17 C -0.093 4.093 18 H 0.121 0.879 19 C -0.112 4.112 20 C -0.110 4.110 21 C -0.148 4.148 22 C 0.108 3.892 23 H 0.073 0.927 24 O -0.589 6.589 25 C -0.091 4.091 26 C -0.067 4.067 27 C -0.243 4.243 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.396 0.604 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.115 0.885 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -12.742 14.193 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.802 3.198 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.524 4.524 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.212 4.212 11 C -0.101 4.101 12 C -0.229 4.229 13 C 0.069 3.931 14 N -0.360 5.360 15 C 0.297 3.703 16 O -0.473 6.473 17 C -0.114 4.114 18 H 0.139 0.861 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.186 4.186 22 C 0.050 3.950 23 H 0.091 0.909 24 O -0.398 6.398 25 C -0.129 4.129 26 C -0.086 4.086 27 C -0.263 4.263 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.247 0.753 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.107 0.893 40 H 0.246 0.754 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.133 0.867 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.853 -12.897 13.246 18.885 hybrid contribution 0.492 1.006 0.061 1.122 sum 4.345 -11.891 13.307 18.368 Atomic orbital electron populations 1.69883 1.09084 1.30697 1.34933 1.26791 0.95450 1.04653 0.91140 0.85165 0.79526 0.76154 0.78935 1.18012 1.19215 1.18833 1.19919 0.98719 0.92593 1.41144 0.90436 1.18008 0.91632 0.93108 0.88889 1.21260 1.00399 0.97051 1.02463 1.20740 0.98204 0.92392 0.98748 1.19170 1.01700 0.92990 1.08994 1.19708 0.95502 0.92320 0.85567 1.46305 1.38390 1.25472 1.25828 1.21221 0.82290 0.80024 0.86770 1.90665 1.32053 1.58897 1.65702 1.21250 0.97066 0.98646 0.94466 0.86073 1.21599 0.91586 1.02380 0.99445 1.21471 1.00005 0.96938 0.96370 1.22262 0.94794 0.98659 1.02845 1.21786 0.91329 0.86536 0.95382 0.90895 1.86496 1.63637 1.41659 1.48029 1.21176 0.99230 0.95569 0.96956 1.20662 0.94589 0.96948 0.96355 1.21148 1.04598 0.92931 1.07573 0.90010 0.88160 0.87872 0.92955 0.92476 0.75336 0.92435 0.90012 0.89917 0.89902 0.92338 0.89323 0.75419 0.92748 0.92965 0.86716 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.89 10.98 21.83 0.24 -41.65 16 2 C 0.04 1.73 5.13 85.26 0.44 2.16 16 3 Si 0.98 36.87 29.60 68.60 2.03 38.90 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 7 C -0.49 -25.79 9.05 23.46 0.21 -25.58 16 8 H 0.08 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.09 4.47 5.58 -21.29 -0.12 4.35 16 10 C -0.19 -9.69 8.70 22.73 0.20 -9.50 16 11 C -0.08 -3.59 9.67 22.22 0.21 -3.37 16 12 C -0.23 -8.99 5.27 -19.67 -0.10 -9.09 16 13 C 0.19 6.64 5.79 85.64 0.50 7.14 16 14 N -0.71 -20.47 5.44 -466.80 -2.54 -23.01 16 15 C 0.51 14.96 7.15 87.66 0.63 15.59 16 16 O -0.59 -22.66 15.98 -3.03 -0.05 -22.71 16 17 C -0.09 -1.90 2.53 -11.54 -0.03 -1.93 16 18 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 19 C -0.11 -1.83 5.10 30.59 0.16 -1.67 16 20 C -0.11 -1.24 5.92 30.59 0.18 -1.06 16 21 C -0.15 -1.79 5.55 30.59 0.17 -1.62 16 22 C 0.11 1.72 3.47 30.59 0.11 1.83 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 O -0.59 -10.40 13.32 -148.98 -1.98 -12.38 16 25 C -0.09 -2.08 4.14 30.59 0.13 -1.95 16 26 C -0.07 -2.73 9.67 22.22 0.21 -2.52 16 27 C -0.24 -11.33 9.80 22.73 0.22 -11.11 16 28 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 29 H 0.10 5.34 6.16 -2.91 -0.02 5.32 16 30 H 0.10 4.12 8.06 -2.91 -0.02 4.09 16 31 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 32 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 33 H 0.41 10.30 7.88 -92.71 -0.73 9.57 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.23 7.56 -2.39 -0.02 1.21 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.40 3.00 9.08 -74.05 -0.67 2.33 16 41 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 42 H 0.05 1.43 8.10 -2.39 -0.02 1.41 16 43 H 0.11 4.04 8.06 -2.91 -0.02 4.02 16 44 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -65.19 359.56 0.41 -64.78 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -0.39 Total: 34.40 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 3.11 Total: -38.32 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -2.30 Total: -64.66 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -2.03 Total: -35.09 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -65.19 0.41 -64.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518194801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.592 kcal (2) G-P(sol) polarization free energy of solvation -65.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds