Wall clock time and date at job start Tue Mar 31 2020 08:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46658 * 274.66251 * 3 2 1 5 5 H 1.48499 * 109.46968 * 34.66240 * 3 2 1 6 6 H 1.48499 * 109.47215 * 154.66251 * 3 2 1 7 7 C 1.39943 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 162.23250 * 7 2 1 9 9 C 1.41396 * 120.00155 * 342.23415 * 7 2 1 10 10 C 1.40720 * 120.24363 * 155.28673 * 9 7 2 11 11 C 1.37621 * 119.74277 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24854 * 359.97328 * 11 10 9 13 13 C 1.50707 * 119.74844 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47123 * 90.00270 * 13 12 11 15 15 C 1.34778 * 119.99877 * 179.97438 * 14 13 12 16 16 O 1.21275 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99911 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46830 * 60.00064 * 17 15 14 19 19 C 1.52996 * 109.47050 * 300.00314 * 17 15 14 20 20 C 1.53004 * 109.47154 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47035 * 59.99930 * 20 19 17 22 22 C 1.53007 * 109.46918 * 299.99872 * 21 20 19 23 23 H 1.08998 * 109.47035 * 179.97438 * 22 21 20 24 24 O 1.42892 * 109.47115 * 300.00176 * 22 21 20 25 25 C 1.52994 * 109.47131 * 180.02562 * 17 15 14 26 26 C 1.38634 * 120.50628 * 0.30251 * 12 11 10 27 27 C 1.37624 * 120.24292 * 359.44590 * 26 12 11 28 28 H 0.97000 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.12593 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87601 * 179.97438 * 11 10 9 31 31 H 1.08997 * 109.46684 * 329.99892 * 13 12 11 32 32 H 1.09007 * 109.46834 * 210.00613 * 13 12 11 33 33 H 0.97005 * 119.99781 * 359.97438 * 14 13 12 34 34 H 1.09003 * 109.47781 * 60.00080 * 19 17 15 35 35 H 1.08998 * 109.47100 * 299.99584 * 19 17 15 36 36 H 1.08996 * 109.47326 * 179.97438 * 20 19 17 37 37 H 1.08998 * 109.46802 * 299.99796 * 20 19 17 38 38 H 1.09004 * 109.47199 * 59.99875 * 21 20 19 39 39 H 1.09000 * 109.47291 * 180.02562 * 21 20 19 40 40 H 0.96702 * 114.00333 * 299.99743 * 24 22 21 41 41 H 1.09004 * 109.47016 * 59.99894 * 25 17 15 42 42 H 1.09004 * 109.47508 * 300.00126 * 25 17 15 43 43 H 1.07993 * 119.88322 * 179.70135 * 26 12 11 44 44 H 1.08004 * 120.12905 * 180.27545 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8218 -3.6494 -0.0899 11 6 1.1747 -4.8062 0.2802 12 6 0.0640 -4.7508 1.1080 13 6 -0.6356 -6.0247 1.5068 14 7 -0.0426 -6.5411 2.7429 15 6 -0.5120 -7.6794 3.2912 16 8 -1.4255 -8.2758 2.7615 17 6 0.0984 -8.2109 4.5623 18 1 -0.0124 -7.4714 5.3554 19 6 1.5842 -8.4957 4.3344 20 6 2.2041 -9.0348 5.6252 21 6 1.4934 -10.3275 6.0311 22 6 0.0075 -10.0427 6.2590 23 1 -0.4989 -10.9637 6.5477 24 8 -0.1376 -9.0728 7.2983 25 6 -0.6120 -9.5040 4.9673 26 6 -0.4114 -3.5322 1.5672 27 6 0.2229 -2.3631 1.2140 28 1 -0.4850 0.8400 0.0004 29 1 2.6865 -3.6947 -0.7352 30 1 1.5335 -5.7607 -0.0754 31 1 -0.5241 -6.7640 0.7137 32 1 -1.6945 -5.8223 1.6686 33 1 0.6878 -6.0638 3.1667 34 1 2.0907 -7.5746 4.0457 35 1 1.6950 -9.2352 3.5413 36 1 3.2625 -9.2381 5.4627 37 1 2.0934 -8.2949 6.4179 38 1 1.6041 -11.0673 5.2382 39 1 1.9347 -10.7114 6.9509 40 1 0.2338 -9.3480 8.1478 41 1 -0.5009 -10.2433 4.1740 42 1 -1.6707 -9.3016 5.1295 43 1 -1.2804 -3.5004 2.2077 44 1 -0.1464 -1.4150 1.5764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518194803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:55 Heat of formation + Delta-G solvation = -101.291841 kcal Electronic energy + Delta-G solvation = -24077.392779 eV Core-core repulsion = 20571.618334 eV Total energy + Delta-G solvation = -3505.774445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16550 -38.49023 -37.60131 -35.17205 -34.70358 -33.40241 -31.29450 -30.42728 -29.76513 -29.34129 -26.89625 -24.29298 -23.04128 -22.59325 -21.07632 -20.40467 -20.10427 -19.60942 -17.39033 -17.35251 -16.84377 -15.89614 -15.45647 -15.30893 -14.95840 -14.66548 -14.35135 -14.09857 -13.79345 -13.65595 -13.15978 -13.00506 -12.67467 -12.56405 -12.51610 -12.04267 -11.96292 -11.84626 -11.59481 -11.35720 -11.18802 -11.10068 -11.06224 -10.90047 -10.62556 -10.54841 -10.50778 -9.91315 -9.72644 -9.50265 -9.42783 -9.19976 -8.60060 -7.56647 -7.44406 -6.86412 -4.45983 2.58445 2.94406 2.98389 3.01831 3.02627 3.08955 3.72329 3.85708 4.02850 4.46214 4.48521 4.58142 4.67407 4.96665 4.99792 5.13932 5.18490 5.26756 5.38995 5.51171 5.60051 5.67755 5.77940 5.83155 5.88097 5.92855 5.97501 6.01708 6.12981 6.23814 6.25754 6.31819 6.37160 6.86834 6.88791 6.98118 7.18724 7.26877 7.42641 7.51532 7.70956 7.95618 7.97042 8.02590 8.19730 8.53789 8.57589 8.79090 8.86948 10.07790 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002616 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.914160 B =10702.579974 C =11005.068739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.459 4.459 8 H 0.079 0.921 9 C 0.117 3.883 10 C -0.230 4.230 11 C -0.070 4.070 12 C -0.244 4.244 13 C 0.183 3.817 14 N -0.717 5.717 15 C 0.509 3.491 16 O -0.556 6.556 17 C -0.102 4.102 18 H 0.103 0.897 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.153 4.153 22 C 0.104 3.896 23 H 0.055 0.945 24 O -0.562 6.562 25 C -0.090 4.090 26 C -0.081 4.081 27 C -0.169 4.169 28 H 0.282 0.718 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.374 0.626 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -14.173 11.971 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.246 4.246 13 C 0.061 3.939 14 N -0.367 5.367 15 C 0.295 3.705 16 O -0.435 6.435 17 C -0.123 4.123 18 H 0.121 0.879 19 C -0.149 4.149 20 C -0.151 4.151 21 C -0.191 4.191 22 C 0.045 3.955 23 H 0.073 0.927 24 O -0.368 6.368 25 C -0.128 4.128 26 C -0.100 4.100 27 C -0.188 4.188 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.220 0.780 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.017 -14.090 11.059 18.025 hybrid contribution 0.942 0.746 0.481 1.294 sum 2.959 -13.344 11.540 17.888 Atomic orbital electron populations 1.69824 1.07657 1.29451 1.34271 1.25953 0.94741 1.01482 0.92137 0.86299 0.80772 0.80554 0.79149 1.19490 1.19950 1.18348 1.19645 0.98171 0.91292 1.39692 0.90304 1.17667 0.90873 0.92050 0.88028 1.20964 1.04000 0.92858 1.07089 1.20397 0.94973 0.96466 0.97056 1.18993 1.02505 0.92643 1.10440 1.19935 0.95964 0.93308 0.84652 1.46531 1.37958 1.24998 1.27225 1.20694 0.83068 0.80819 0.85920 1.90650 1.30063 1.58929 1.63821 1.21245 0.95894 0.99192 0.96018 0.87902 1.21529 0.93407 1.01860 0.98087 1.21430 0.98842 0.97089 0.97697 1.22279 0.96310 0.98615 1.01918 1.21842 0.94357 0.90901 0.88359 0.92661 1.86558 1.83274 1.45144 1.21790 1.21343 1.00153 0.96501 0.94795 1.20563 0.98048 0.92609 0.98807 1.21308 0.99453 0.96761 1.01308 0.90692 0.88924 0.89438 0.92536 0.92448 0.76585 0.91076 0.91585 0.91798 0.91061 0.90970 0.91823 0.77971 0.90034 0.90646 0.89410 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.85 10.97 55.55 0.61 -19.24 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 9 C 0.12 3.00 5.57 -106.82 -0.60 2.40 16 10 C -0.23 -5.42 9.80 -38.87 -0.38 -5.80 16 11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 12 C -0.24 -5.09 5.27 -104.33 -0.55 -5.64 16 13 C 0.18 3.38 5.79 -5.19 -0.03 3.35 16 14 N -0.72 -11.47 5.44 -61.47 -0.33 -11.81 16 15 C 0.51 8.06 7.15 -10.99 -0.08 7.98 16 16 O -0.56 -10.72 15.98 5.56 0.09 -10.63 16 17 C -0.10 -1.24 2.38 -91.78 -0.22 -1.46 16 18 H 0.10 1.27 7.68 -51.93 -0.40 0.87 16 19 C -0.11 -1.13 5.10 -26.73 -0.14 -1.27 16 20 C -0.11 -0.93 5.78 -26.73 -0.15 -1.09 16 21 C -0.15 -1.11 5.64 -26.73 -0.15 -1.26 16 22 C 0.10 0.89 3.78 -26.70 -0.10 0.79 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 O -0.56 -5.02 11.97 -35.23 -0.42 -5.44 16 25 C -0.09 -1.02 4.24 -26.71 -0.11 -1.14 16 26 C -0.08 -1.83 9.67 -39.66 -0.38 -2.21 16 27 C -0.17 -4.23 8.70 -38.87 -0.34 -4.57 16 28 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 29 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.06 1.10 8.08 -51.92 -0.42 0.68 16 33 H 0.40 5.87 7.88 -40.82 -0.32 5.55 16 34 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.61 7.68 -51.93 -0.40 0.21 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.37 1.76 9.08 45.56 0.41 2.18 16 41 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 42 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 43 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 44 H 0.12 3.06 6.18 -52.48 -0.32 2.73 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -29.11 357.50 -9.78 -38.89 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.03 Total: 11.96 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -4.04 Total: -22.16 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.27 Total: -31.05 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.33 Total: -16.07 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.11 -9.78 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518194803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.399 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds