Wall clock time and date at job start Tue Mar 31 2020 08:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 120.00159 * 2 1 4 4 H 1.48503 * 109.46658 * 274.66251 * 3 2 1 5 5 H 1.48499 * 109.46968 * 34.66240 * 3 2 1 6 6 H 1.48499 * 109.47215 * 154.66251 * 3 2 1 7 7 C 1.39943 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 162.23250 * 7 2 1 9 9 C 1.41396 * 120.00155 * 342.23415 * 7 2 1 10 10 C 1.40720 * 120.24363 * 155.28673 * 9 7 2 11 11 C 1.37621 * 119.74277 * 180.02562 * 10 9 7 12 12 C 1.38631 * 120.24854 * 359.97328 * 11 10 9 13 13 C 1.50707 * 119.74844 * 180.02562 * 12 11 10 14 14 N 1.46497 * 109.47123 * 90.00270 * 13 12 11 15 15 C 1.34778 * 119.99877 * 179.97438 * 14 13 12 16 16 O 1.21275 * 119.99907 * 359.97438 * 15 14 13 17 17 C 1.50699 * 119.99911 * 179.97438 * 15 14 13 18 18 H 1.08998 * 109.46830 * 60.00064 * 17 15 14 19 19 C 1.52996 * 109.47050 * 300.00314 * 17 15 14 20 20 C 1.53004 * 109.47154 * 179.97438 * 19 17 15 21 21 C 1.53002 * 109.47035 * 59.99930 * 20 19 17 22 22 C 1.53007 * 109.46918 * 299.99872 * 21 20 19 23 23 H 1.08998 * 109.47035 * 179.97438 * 22 21 20 24 24 O 1.42892 * 109.47115 * 300.00176 * 22 21 20 25 25 C 1.52994 * 109.47131 * 180.02562 * 17 15 14 26 26 C 1.38634 * 120.50628 * 0.30251 * 12 11 10 27 27 C 1.37624 * 120.24292 * 359.44590 * 26 12 11 28 28 H 0.97000 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.07993 * 120.12593 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.87601 * 179.97438 * 11 10 9 31 31 H 1.08997 * 109.46684 * 329.99892 * 13 12 11 32 32 H 1.09007 * 109.46834 * 210.00613 * 13 12 11 33 33 H 0.97005 * 119.99781 * 359.97438 * 14 13 12 34 34 H 1.09003 * 109.47781 * 60.00080 * 19 17 15 35 35 H 1.08998 * 109.47100 * 299.99584 * 19 17 15 36 36 H 1.08996 * 109.47326 * 179.97438 * 20 19 17 37 37 H 1.08998 * 109.46802 * 299.99796 * 20 19 17 38 38 H 1.09004 * 109.47199 * 59.99875 * 21 20 19 39 39 H 1.09000 * 109.47291 * 180.02562 * 21 20 19 40 40 H 0.96702 * 114.00333 * 299.99743 * 24 22 21 41 41 H 1.09004 * 109.47016 * 59.99894 * 25 17 15 42 42 H 1.09004 * 109.47508 * 300.00126 * 25 17 15 43 43 H 1.07993 * 119.88322 * 179.70135 * 26 12 11 44 44 H 1.08004 * 120.12905 * 180.27545 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 1.8218 -3.6494 -0.0899 11 6 1.1747 -4.8062 0.2802 12 6 0.0640 -4.7508 1.1080 13 6 -0.6356 -6.0247 1.5068 14 7 -0.0426 -6.5411 2.7429 15 6 -0.5120 -7.6794 3.2912 16 8 -1.4255 -8.2758 2.7615 17 6 0.0984 -8.2109 4.5623 18 1 -0.0124 -7.4714 5.3554 19 6 1.5842 -8.4957 4.3344 20 6 2.2041 -9.0348 5.6252 21 6 1.4934 -10.3275 6.0311 22 6 0.0075 -10.0427 6.2590 23 1 -0.4989 -10.9637 6.5477 24 8 -0.1376 -9.0728 7.2983 25 6 -0.6120 -9.5040 4.9673 26 6 -0.4114 -3.5322 1.5672 27 6 0.2229 -2.3631 1.2140 28 1 -0.4850 0.8400 0.0004 29 1 2.6865 -3.6947 -0.7352 30 1 1.5335 -5.7607 -0.0754 31 1 -0.5241 -6.7640 0.7137 32 1 -1.6945 -5.8223 1.6686 33 1 0.6878 -6.0638 3.1667 34 1 2.0907 -7.5746 4.0457 35 1 1.6950 -9.2352 3.5413 36 1 3.2625 -9.2381 5.4627 37 1 2.0934 -8.2949 6.4179 38 1 1.6041 -11.0673 5.2382 39 1 1.9347 -10.7114 6.9509 40 1 0.2338 -9.3480 8.1478 41 1 -0.5009 -10.2433 4.1740 42 1 -1.6707 -9.3016 5.1295 43 1 -1.2804 -3.5004 2.2077 44 1 -0.1464 -1.4150 1.5764 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000518194803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:54 Heat of formation + Delta-G solvation = -119.330833 kcal Electronic energy + Delta-G solvation = -24078.175009 eV Core-core repulsion = 20571.618334 eV Total energy + Delta-G solvation = -3506.556674 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.27893 -39.70400 -39.12272 -36.33435 -35.94041 -35.06284 -32.40705 -31.72885 -31.19171 -30.68491 -28.53703 -25.76223 -24.21825 -23.36448 -22.91290 -21.84023 -21.41875 -20.60333 -19.24861 -18.41990 -17.62966 -17.24940 -16.97963 -16.56211 -16.14064 -15.79570 -15.60324 -15.40916 -15.25430 -15.02450 -14.40955 -14.26111 -14.03593 -13.84321 -13.50276 -13.43737 -13.28431 -13.26421 -12.95131 -12.74083 -12.64220 -12.40556 -12.20973 -12.15738 -11.78867 -11.66200 -11.50370 -11.32576 -11.30863 -11.04842 -10.67924 -10.55296 -10.02168 -9.40906 -9.29038 -8.67696 -6.37675 0.83633 1.12144 1.38454 1.46108 1.53869 1.66364 2.19299 2.35578 2.76979 3.40366 3.64575 3.70573 3.76234 3.92249 4.11979 4.19831 4.21848 4.29509 4.32223 4.43936 4.49749 4.50538 4.63908 4.67015 4.71686 4.80516 5.03145 5.03983 5.08754 5.13850 5.16185 5.17889 5.29397 5.30626 5.33627 5.41386 5.47918 5.52933 5.67268 5.89773 6.07482 6.18816 6.34702 6.63772 6.66648 6.90764 6.99516 7.00503 7.27498 8.29124 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.002616 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.914160 B =10702.579974 C =11005.068739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.496 4.496 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.242 4.242 11 C -0.067 4.067 12 C -0.227 4.227 13 C 0.192 3.808 14 N -0.712 5.712 15 C 0.508 3.492 16 O -0.591 6.591 17 C -0.092 4.092 18 H 0.104 0.896 19 C -0.109 4.109 20 C -0.110 4.110 21 C -0.149 4.149 22 C 0.109 3.891 23 H 0.070 0.930 24 O -0.581 6.581 25 C -0.093 4.093 26 C -0.084 4.084 27 C -0.191 4.191 28 H 0.289 0.711 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.408 0.592 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.393 0.607 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.102 0.898 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.436 -15.343 13.228 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.084 3.916 10 C -0.261 4.261 11 C -0.086 4.086 12 C -0.229 4.229 13 C 0.069 3.931 14 N -0.362 5.362 15 C 0.296 3.704 16 O -0.472 6.472 17 C -0.113 4.113 18 H 0.122 0.878 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.186 4.186 22 C 0.051 3.949 23 H 0.088 0.912 24 O -0.389 6.389 25 C -0.131 4.131 26 C -0.103 4.103 27 C -0.210 4.210 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.244 0.756 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.242 0.758 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.120 0.880 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.285 -15.276 12.342 19.912 hybrid contribution 0.472 0.967 0.111 1.082 sum 3.757 -14.308 12.454 19.338 Atomic orbital electron populations 1.69876 1.09092 1.30717 1.35054 1.26793 0.95465 1.04658 0.91136 0.85196 0.79269 0.75920 0.79381 1.18777 1.19110 1.18057 1.19896 0.98453 0.92493 1.41636 0.90379 1.18006 0.91631 0.93157 0.88828 1.21160 1.04581 0.92978 1.07412 1.20665 0.94552 0.96984 0.96374 1.19191 1.01747 0.93033 1.08932 1.19716 0.95405 0.92145 0.85815 1.46351 1.38111 1.25246 1.26515 1.21368 0.82345 0.80050 0.86637 1.90635 1.31669 1.59841 1.65083 1.21220 0.97141 0.99391 0.93566 0.87847 1.21546 0.91791 1.01969 0.99384 1.21423 0.99500 0.97513 0.96317 1.22258 0.95058 0.98132 1.03184 1.21763 0.95279 0.90952 0.86952 0.91210 1.86506 1.83769 1.45677 1.22967 1.21354 0.99072 0.96051 0.96576 1.20744 0.98232 0.92498 0.98793 1.21253 1.00337 0.96955 1.02488 0.90027 0.88223 0.86618 0.92255 0.93077 0.75599 0.91103 0.91838 0.90495 0.91141 0.90672 0.89468 0.75756 0.90452 0.92854 0.88037 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.51 10.97 21.83 0.24 -42.27 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 37.33 29.60 68.60 2.03 39.36 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.50 -26.15 9.05 23.46 0.21 -25.94 16 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 9 C 0.09 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -11.44 9.80 22.73 0.22 -11.22 16 11 C -0.07 -2.79 9.67 22.22 0.21 -2.58 16 12 C -0.23 -9.28 5.27 -19.67 -0.10 -9.38 16 13 C 0.19 6.87 5.79 85.64 0.50 7.36 16 14 N -0.71 -21.95 5.44 -466.78 -2.54 -24.49 16 15 C 0.51 15.71 7.15 87.66 0.63 16.33 16 16 O -0.59 -22.67 15.98 -3.01 -0.05 -22.72 16 17 C -0.09 -2.12 2.38 -11.54 -0.03 -2.15 16 18 H 0.10 2.42 7.68 -2.39 -0.02 2.40 16 19 C -0.11 -2.01 5.10 30.59 0.16 -1.85 16 20 C -0.11 -1.50 5.78 30.60 0.18 -1.32 16 21 C -0.15 -1.67 5.64 30.60 0.17 -1.50 16 22 C 0.11 1.62 3.78 30.61 0.12 1.73 16 23 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 24 O -0.58 -9.02 11.97 -148.98 -1.78 -10.81 16 25 C -0.09 -2.02 4.24 30.61 0.13 -1.89 16 26 C -0.08 -3.78 9.67 22.22 0.21 -3.56 16 27 C -0.19 -9.82 8.70 22.73 0.20 -9.63 16 28 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 29 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.12 4.15 8.06 -2.91 -0.02 4.12 16 31 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 32 H 0.05 1.91 8.08 -2.38 -0.02 1.89 16 33 H 0.41 11.39 7.88 -92.70 -0.73 10.66 16 34 H 0.07 1.30 7.57 -2.39 -0.02 1.28 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.00 7.68 -2.39 -0.02 0.98 16 38 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.39 2.59 9.08 -74.06 -0.67 1.92 16 41 H 0.08 1.72 8.10 -2.38 -0.02 1.70 16 42 H 0.05 1.37 8.10 -2.38 -0.02 1.36 16 43 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.10 5.43 6.18 -2.91 -0.02 5.41 16 Total: -1.00 -63.88 357.50 0.63 -63.25 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.39 Total: 36.66 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.12 Total: -38.99 kcal Atomic # 7 Polarization: -64.45 SS G_CDS: -2.30 Total: -66.75 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -1.83 Total: -33.52 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -63.88 0.63 -63.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518194803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.085 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds