Wall clock time and date at job start Tue Mar 31 2020 07:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00239 * 2 1 4 4 H 1.48495 * 109.47566 * 270.00559 * 3 2 1 5 5 H 1.48504 * 109.46770 * 30.00911 * 3 2 1 6 6 H 1.48501 * 109.47009 * 150.00401 * 3 2 1 7 7 C 1.37881 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99282 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.45838 * 180.02562 * 9 7 2 11 11 C 1.53193 * 109.31334 * 181.37106 * 10 9 7 12 12 N 1.46928 * 108.77405 * 305.36285 * 11 10 9 13 13 C 1.34778 * 120.62929 * 233.58646 * 12 11 10 14 14 O 1.21278 * 120.00147 * 5.07475 * 13 12 11 15 15 C 1.50700 * 120.00043 * 185.06969 * 13 12 11 16 16 H 1.09005 * 109.46951 * 48.33270 * 15 13 12 17 17 O 1.42893 * 109.47289 * 168.33218 * 15 13 12 18 18 C 1.53000 * 109.47314 * 288.33334 * 15 13 12 19 19 C 1.50698 * 109.47061 * 177.24220 * 18 15 13 20 20 C 1.38240 * 119.99709 * 90.00117 * 19 18 15 21 21 C 1.38238 * 119.99929 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.99856 * 359.96054 * 21 20 19 23 23 C 1.38241 * 120.00058 * 0.27239 * 22 21 20 24 24 C 1.38227 * 119.99899 * 359.53332 * 23 22 21 25 25 C 1.46929 * 118.73799 * 53.85555 * 12 11 10 26 26 C 1.53046 * 109.44451 * 300.06052 * 9 7 2 27 27 H 0.97004 * 119.99621 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46171 * 60.02815 * 9 7 2 29 29 H 1.08993 * 109.50221 * 61.41242 * 10 9 7 30 30 H 1.09004 * 109.49393 * 301.31790 * 10 9 7 31 31 H 1.08998 * 109.58410 * 185.57464 * 11 10 9 32 32 H 1.08999 * 109.70407 * 65.21386 * 11 10 9 33 33 H 0.96697 * 114.00247 * 59.99387 * 17 15 13 34 34 H 1.09000 * 109.47172 * 57.24395 * 18 15 13 35 35 H 1.09002 * 109.46997 * 297.24849 * 18 15 13 36 36 H 1.07994 * 120.00075 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.99752 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00206 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99687 * 179.72753 * 23 22 21 40 40 H 1.08000 * 120.00345 * 180.20724 * 24 23 22 41 41 H 1.08997 * 109.58272 * 65.93335 * 25 12 11 42 42 H 1.09003 * 109.58457 * 186.35118 * 25 12 11 43 43 H 1.08999 * 109.50008 * 298.57589 * 26 9 7 44 44 H 1.08997 * 109.50060 * 58.67275 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7003 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2455 -3.6623 -0.0005 11 6 1.4764 -4.9867 -0.0351 12 7 0.5223 -5.0087 1.0820 13 6 0.5115 -6.0349 1.9557 14 8 1.3528 -6.9051 1.8794 15 6 -0.5457 -6.1008 3.0276 16 1 -1.5260 -5.9315 2.5819 17 8 -0.5191 -7.3895 3.6443 18 6 -0.2718 -5.0256 4.0810 19 6 -1.3662 -5.0468 5.1168 20 6 -1.2424 -5.8477 6.2367 21 6 -2.2465 -5.8677 7.1867 22 6 -3.3739 -5.0861 7.0170 23 6 -3.4999 -4.2889 5.8947 24 6 -2.4941 -4.2659 4.9469 25 6 -0.4239 -3.8938 1.2249 26 6 0.3705 -2.5792 1.2489 27 1 -0.4850 0.8401 0.0004 28 1 0.6243 -2.5567 -0.8906 29 1 2.8556 -3.6193 0.9016 30 1 2.8879 -3.5916 -0.8784 31 1 2.1749 -5.8175 0.0644 32 1 0.9369 -5.0738 -0.9782 33 1 0.3251 -7.6082 4.0623 34 1 -0.2437 -4.0467 3.6023 35 1 0.6867 -5.2230 4.5609 36 1 -0.3612 -6.4578 6.3695 37 1 -2.1499 -6.4937 8.0614 38 1 -4.1586 -5.1020 7.7590 39 1 -4.3828 -3.6816 5.7601 40 1 -2.5909 -3.6406 4.0717 41 1 -1.1154 -3.8912 0.3824 42 1 -0.9798 -4.0035 2.1561 43 1 0.9985 -2.5465 2.1391 44 1 -0.3219 -1.7375 1.2605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527254594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:56 Heat of formation + Delta-G solvation = -71.118043 kcal Electronic energy + Delta-G solvation = -25230.908232 eV Core-core repulsion = 21726.442221 eV Total energy + Delta-G solvation = -3504.466011 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.34906 -39.12774 -37.30134 -36.19685 -33.76782 -32.91113 -31.38211 -30.92350 -30.22922 -28.75296 -26.38368 -24.59260 -22.89429 -22.57737 -22.30485 -21.16329 -20.19970 -18.61137 -17.54035 -16.89996 -16.49159 -16.27028 -15.54248 -15.22173 -15.16137 -14.70179 -14.54179 -14.27745 -13.76890 -13.44172 -13.19062 -13.09628 -12.90364 -12.79243 -12.61103 -12.38271 -11.86029 -11.74187 -11.63960 -11.35062 -11.16042 -11.00120 -10.98381 -10.73241 -10.66305 -10.45310 -10.16382 -9.73490 -9.35629 -9.23709 -8.98544 -8.94638 -8.68400 -8.44057 -8.09990 -6.09215 -4.15227 1.29268 1.37568 2.78161 3.24537 3.31598 3.32144 3.35400 3.75032 4.27458 4.36316 4.56716 4.74932 4.84433 4.96378 5.00660 5.04898 5.10046 5.20296 5.38944 5.45810 5.48988 5.69701 5.69921 5.77254 5.88358 5.95717 6.01581 6.04232 6.08454 6.16964 6.37030 6.41542 6.46667 6.57495 6.58838 6.80863 6.95023 6.96648 7.04598 7.17841 7.49344 7.59482 7.81130 7.84305 7.96512 8.33614 8.39406 8.88148 9.50373 10.96357 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.004221 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.992687 B = 6632.336422 C = 8116.355335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.110 3.890 12 N -0.594 5.594 13 C 0.483 3.517 14 O -0.553 6.553 15 C 0.103 3.897 16 H 0.121 0.879 17 O -0.536 6.536 18 C -0.120 4.120 19 C -0.071 4.071 20 C -0.104 4.104 21 C -0.122 4.122 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.091 3.909 26 C -0.123 4.123 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.379 0.621 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.046 -9.170 10.528 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.012 4.012 12 N -0.327 5.327 13 C 0.270 3.730 14 O -0.432 6.432 15 C 0.040 3.960 16 H 0.138 0.862 17 O -0.340 6.340 18 C -0.158 4.158 19 C -0.071 4.071 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.030 4.030 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.367 -9.518 10.264 15.378 hybrid contribution 0.952 1.143 0.132 1.493 sum -5.415 -8.375 10.396 14.406 Atomic orbital electron populations 1.69825 1.05837 1.26525 1.50886 1.24945 0.94871 0.99043 0.94998 0.86621 0.79925 0.83493 0.78142 1.20696 1.21223 1.19974 1.21199 0.92973 0.90531 1.50375 0.92696 1.18631 0.92640 0.91762 0.93941 1.22001 0.98911 0.94115 1.01047 1.21730 0.91833 0.99848 0.87824 1.48282 1.35783 1.20840 1.27841 1.21425 0.86444 0.81748 0.83388 1.90648 1.39500 1.39433 1.73644 1.21782 0.98909 0.84360 0.90968 0.86151 1.86579 1.39742 1.33032 1.74684 1.21491 0.97819 1.00909 0.95570 1.19641 0.95396 0.96747 0.95311 1.21000 0.99100 0.98271 0.93832 1.21104 0.94280 0.99454 0.99169 1.21123 0.97989 0.97392 0.97969 1.21130 0.98887 0.99239 0.94454 1.21140 0.93509 0.99098 0.99562 1.22391 0.91829 0.87762 1.01048 1.22110 1.00008 0.94307 0.99716 0.92938 0.95402 0.92936 0.92102 0.90360 0.92078 0.77222 0.87878 0.89972 0.86293 0.86325 0.86408 0.86086 0.85687 0.91636 0.90959 0.94109 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 11.31 55.43 0.63 -23.01 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.51 -13.24 8.56 -34.44 -0.29 -13.54 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 11 C 0.11 1.95 6.44 -3.71 -0.02 1.92 16 12 N -0.59 -10.12 2.97 -172.50 -0.51 -10.63 16 13 C 0.48 8.07 7.05 -10.98 -0.08 7.99 16 14 O -0.55 -10.79 15.72 -14.08 -0.22 -11.01 16 15 C 0.10 1.39 2.55 -27.88 -0.07 1.31 16 16 H 0.12 1.55 7.55 -51.93 -0.39 1.16 16 17 O -0.54 -7.27 12.44 -54.87 -0.68 -7.96 16 18 C -0.12 -1.48 4.61 -27.88 -0.13 -1.61 16 19 C -0.07 -0.84 4.94 -104.62 -0.52 -1.36 16 20 C -0.10 -1.15 9.34 -39.58 -0.37 -1.52 16 21 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 24 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 25 C 0.09 1.51 5.60 -3.48 -0.02 1.49 16 26 C -0.12 -2.53 5.13 -26.38 -0.14 -2.67 16 27 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 4.32 8.72 45.56 0.40 4.72 16 34 H 0.10 1.34 5.52 -51.93 -0.29 1.06 16 35 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.00 4.18 -51.93 -0.22 0.78 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 2.44 6.03 -51.93 -0.31 2.12 16 LS Contribution 352.28 15.07 5.31 5.31 Total: -1.00 -29.41 352.28 -9.93 -39.34 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.79 Total: 7.35 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -3.64 Total: -14.75 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.12 Total: -33.65 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.90 Total: -18.97 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.41 -9.93 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527254594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.782 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds