Wall clock time and date at job start Tue Mar 31 2020 07:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00239 * 2 1 4 4 H 1.48495 * 109.47566 * 270.00559 * 3 2 1 5 5 H 1.48504 * 109.46770 * 30.00911 * 3 2 1 6 6 H 1.48501 * 109.47009 * 150.00401 * 3 2 1 7 7 C 1.37881 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99282 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00201 * 359.97438 * 7 2 1 10 10 C 1.53041 * 109.45838 * 180.02562 * 9 7 2 11 11 C 1.53193 * 109.31334 * 181.37106 * 10 9 7 12 12 N 1.46928 * 108.77405 * 305.36285 * 11 10 9 13 13 C 1.34778 * 120.62929 * 233.58646 * 12 11 10 14 14 O 1.21278 * 120.00147 * 5.07475 * 13 12 11 15 15 C 1.50700 * 120.00043 * 185.06969 * 13 12 11 16 16 H 1.09005 * 109.46951 * 48.33270 * 15 13 12 17 17 O 1.42893 * 109.47289 * 168.33218 * 15 13 12 18 18 C 1.53000 * 109.47314 * 288.33334 * 15 13 12 19 19 C 1.50698 * 109.47061 * 177.24220 * 18 15 13 20 20 C 1.38240 * 119.99709 * 90.00117 * 19 18 15 21 21 C 1.38238 * 119.99929 * 180.02562 * 20 19 18 22 22 C 1.38231 * 119.99856 * 359.96054 * 21 20 19 23 23 C 1.38241 * 120.00058 * 0.27239 * 22 21 20 24 24 C 1.38227 * 119.99899 * 359.53332 * 23 22 21 25 25 C 1.46929 * 118.73799 * 53.85555 * 12 11 10 26 26 C 1.53046 * 109.44451 * 300.06052 * 9 7 2 27 27 H 0.97004 * 119.99621 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46171 * 60.02815 * 9 7 2 29 29 H 1.08993 * 109.50221 * 61.41242 * 10 9 7 30 30 H 1.09004 * 109.49393 * 301.31790 * 10 9 7 31 31 H 1.08998 * 109.58410 * 185.57464 * 11 10 9 32 32 H 1.08999 * 109.70407 * 65.21386 * 11 10 9 33 33 H 0.96697 * 114.00247 * 59.99387 * 17 15 13 34 34 H 1.09000 * 109.47172 * 57.24395 * 18 15 13 35 35 H 1.09002 * 109.46997 * 297.24849 * 18 15 13 36 36 H 1.07994 * 120.00075 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.99752 * 179.97438 * 21 20 19 38 38 H 1.08001 * 120.00206 * 179.97438 * 22 21 20 39 39 H 1.08002 * 119.99687 * 179.72753 * 23 22 21 40 40 H 1.08000 * 120.00345 * 180.20724 * 24 23 22 41 41 H 1.08997 * 109.58272 * 65.93335 * 25 12 11 42 42 H 1.09003 * 109.58457 * 186.35118 * 25 12 11 43 43 H 1.08999 * 109.50008 * 298.57589 * 26 9 7 44 44 H 1.08997 * 109.50060 * 58.67275 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7003 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 6 2.2455 -3.6623 -0.0005 11 6 1.4764 -4.9867 -0.0351 12 7 0.5223 -5.0087 1.0820 13 6 0.5115 -6.0349 1.9557 14 8 1.3528 -6.9051 1.8794 15 6 -0.5457 -6.1008 3.0276 16 1 -1.5260 -5.9315 2.5819 17 8 -0.5191 -7.3895 3.6443 18 6 -0.2718 -5.0256 4.0810 19 6 -1.3662 -5.0468 5.1168 20 6 -1.2424 -5.8477 6.2367 21 6 -2.2465 -5.8677 7.1867 22 6 -3.3739 -5.0861 7.0170 23 6 -3.4999 -4.2889 5.8947 24 6 -2.4941 -4.2659 4.9469 25 6 -0.4239 -3.8938 1.2249 26 6 0.3705 -2.5792 1.2489 27 1 -0.4850 0.8401 0.0004 28 1 0.6243 -2.5567 -0.8906 29 1 2.8556 -3.6193 0.9016 30 1 2.8879 -3.5916 -0.8784 31 1 2.1749 -5.8175 0.0644 32 1 0.9369 -5.0738 -0.9782 33 1 0.3251 -7.6082 4.0623 34 1 -0.2437 -4.0467 3.6023 35 1 0.6867 -5.2230 4.5609 36 1 -0.3612 -6.4578 6.3695 37 1 -2.1499 -6.4937 8.0614 38 1 -4.1586 -5.1020 7.7590 39 1 -4.3828 -3.6816 5.7601 40 1 -2.5909 -3.6406 4.0717 41 1 -1.1154 -3.8912 0.3824 42 1 -0.9798 -4.0035 2.1561 43 1 0.9985 -2.5465 2.1391 44 1 -0.3219 -1.7375 1.2605 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527254594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:55 Heat of formation + Delta-G solvation = -86.823289 kcal Electronic energy + Delta-G solvation = -25231.589262 eV Core-core repulsion = 21726.442221 eV Total energy + Delta-G solvation = -3505.147041 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61603 -40.04363 -38.71644 -37.42381 -35.44273 -34.03407 -32.96857 -31.80655 -31.66079 -29.85340 -28.03672 -25.86480 -24.40647 -23.82930 -23.38460 -22.02293 -21.70838 -20.07109 -18.90212 -18.24353 -17.89475 -17.45487 -16.63774 -16.56363 -16.30236 -16.13190 -15.79312 -15.34966 -15.10851 -14.84969 -14.50251 -14.43748 -14.17541 -14.04605 -13.76119 -13.50054 -13.28984 -13.20964 -12.89898 -12.82283 -12.69193 -12.43883 -12.15728 -11.98187 -11.96456 -11.85532 -11.71903 -11.47309 -11.00902 -10.89556 -10.54150 -10.37786 -9.73948 -9.62379 -9.51076 -8.07616 -6.20080 0.47666 0.58319 1.41329 1.44241 1.46850 1.52396 1.98368 2.44614 2.91889 3.19410 3.22940 3.41447 3.82415 3.88597 4.01115 4.05462 4.17983 4.22727 4.24907 4.34200 4.37799 4.46355 4.53121 4.55933 4.63830 4.71316 4.80653 4.85330 4.88741 4.98190 5.18191 5.19266 5.23794 5.25579 5.42217 5.51470 5.63852 5.65311 5.69438 5.75473 5.99598 6.14086 6.19141 6.36897 6.40745 6.58115 6.88909 7.04387 7.47704 8.95763 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014297 B = 0.004221 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.992687 B = 6632.336422 C = 8116.355335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.112 4.112 11 C 0.114 3.886 12 N -0.597 5.597 13 C 0.483 3.517 14 O -0.581 6.581 15 C 0.114 3.886 16 H 0.131 0.869 17 O -0.541 6.541 18 C -0.110 4.110 19 C -0.085 4.085 20 C -0.115 4.115 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.131 4.131 25 C 0.103 3.897 26 C -0.113 4.113 27 H 0.262 0.738 28 H 0.004 0.996 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.389 0.611 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.032 0.968 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.896 -9.650 11.798 16.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.329 5.329 13 C 0.271 3.729 14 O -0.462 6.462 15 C 0.051 3.949 16 H 0.148 0.852 17 O -0.347 6.347 18 C -0.148 4.148 19 C -0.085 4.085 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.018 4.018 26 C -0.151 4.151 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.238 0.762 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.051 0.949 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.217 -10.003 11.540 16.891 hybrid contribution 1.224 1.282 -0.240 1.789 sum -5.993 -8.720 11.300 15.480 Atomic orbital electron populations 1.69928 1.06670 1.27116 1.51157 1.25564 0.95653 1.01681 0.94843 0.85765 0.78819 0.80244 0.78053 1.20476 1.20765 1.19912 1.21529 0.92860 0.92278 1.50659 0.93626 1.18607 0.93035 0.91778 0.93888 1.21841 0.98324 0.94268 1.00631 1.21621 0.92060 0.98358 0.88778 1.48310 1.35663 1.21167 1.27798 1.22026 0.86574 0.80878 0.83396 1.90633 1.40855 1.40403 1.74346 1.21740 0.97954 0.84909 0.90248 0.85165 1.86562 1.40517 1.32979 1.74597 1.21357 0.98367 0.99736 0.95344 1.19633 0.95424 0.97750 0.95678 1.21224 0.99907 0.98344 0.93848 1.21429 0.93991 0.99569 0.99622 1.21473 0.98496 0.96661 0.98162 1.21410 0.99229 0.99542 0.94432 1.21314 0.93920 0.99462 1.00230 1.22265 0.91153 0.85480 1.02933 1.21853 0.99318 0.95830 0.98120 0.92893 0.97763 0.93930 0.91917 0.90250 0.91019 0.76159 0.88785 0.89768 0.85288 0.84209 0.84124 0.84464 0.85436 0.91170 0.87909 0.94946 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.61 11.31 21.45 0.24 -48.37 16 2 C 0.02 1.14 5.30 84.66 0.45 1.59 16 3 Si 0.94 41.93 29.54 68.60 2.03 43.95 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.54 -28.10 8.56 25.60 0.22 -27.88 16 8 H 0.05 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.05 2.10 2.06 -11.51 -0.02 2.08 16 10 C -0.11 -4.48 5.30 30.67 0.16 -4.32 16 11 C 0.11 3.99 6.44 86.36 0.56 4.54 16 12 N -0.60 -19.76 2.97 -818.06 -2.43 -22.18 16 13 C 0.48 15.53 7.05 87.66 0.62 16.15 16 14 O -0.58 -22.12 15.72 15.75 0.25 -21.87 16 15 C 0.11 2.89 2.55 29.85 0.08 2.97 16 16 H 0.13 3.08 7.55 -2.38 -0.02 3.06 16 17 O -0.54 -13.71 12.44 -130.21 -1.62 -15.33 16 18 C -0.11 -2.56 4.61 29.85 0.14 -2.43 16 19 C -0.08 -1.89 4.94 -19.87 -0.10 -1.98 16 20 C -0.12 -2.33 9.34 22.27 0.21 -2.13 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 24 C -0.13 -2.84 9.70 22.27 0.22 -2.63 16 25 C 0.10 3.31 5.60 86.51 0.48 3.80 16 26 C -0.11 -4.67 5.13 30.82 0.16 -4.51 16 27 H 0.26 13.40 8.31 -92.71 -0.77 12.62 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.20 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.78 7.00 -2.39 -0.02 2.77 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.39 8.24 8.72 -74.06 -0.65 7.59 16 34 H 0.09 2.35 5.52 -2.39 -0.01 2.34 16 35 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 36 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.10 2.68 4.18 -2.39 -0.01 2.67 16 43 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.08 3.84 6.03 -2.39 -0.01 3.83 16 Total: -1.00 -62.25 352.28 2.66 -59.58 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.36 Total: 25.29 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 3.83 Total: -21.07 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -2.18 Total: -70.55 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -1.37 Total: -37.20 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -62.25 2.66 -59.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527254594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.239 kcal (2) G-P(sol) polarization free energy of solvation -62.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds