Wall clock time and date at job start Tue Mar 31 2020 08:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00016 * 2 1 4 4 H 1.48492 * 109.47256 * 240.00254 * 3 2 1 5 5 H 1.48503 * 109.46904 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46889 * 119.99862 * 3 2 1 7 7 C 1.37875 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00246 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47022 * 179.97438 * 9 7 2 11 11 C 1.53046 * 109.45491 * 174.99957 * 10 9 7 12 12 C 1.53190 * 109.30781 * 181.37355 * 11 10 9 13 13 N 1.46931 * 108.77890 * 305.36424 * 12 11 10 14 14 C 1.34773 * 120.63149 * 233.58763 * 13 12 11 15 15 O 1.21612 * 120.00284 * 5.84391 * 14 13 12 16 16 C 1.47381 * 119.99738 * 185.84040 * 14 13 12 17 17 C 1.47013 * 127.19451 * 36.28908 * 16 14 13 18 18 C 1.34174 * 105.95349 * 179.69968 * 17 16 14 19 19 O 1.34214 * 109.12653 * 0.25777 * 18 17 16 20 20 C 1.33645 * 110.90775 * 0.02562 * 19 18 17 21 21 C 1.50704 * 125.80531 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.49451 * 8.77354 * 21 20 19 23 23 C 1.53003 * 117.49602 * 300.11440 * 21 20 19 24 24 C 1.46925 * 118.73297 * 53.86090 * 13 12 11 25 25 C 1.53039 * 109.45156 * 295.06227 * 10 9 7 26 26 H 0.97000 * 119.99951 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46913 * 59.99607 * 9 7 2 28 28 H 1.08999 * 109.46735 * 300.00465 * 9 7 2 29 29 H 1.09001 * 109.45797 * 55.03228 * 10 9 7 30 30 H 1.09001 * 109.49671 * 61.42542 * 11 10 9 31 31 H 1.08998 * 109.49895 * 301.32518 * 11 10 9 32 32 H 1.09000 * 109.58931 * 185.57877 * 12 11 10 33 33 H 1.09001 * 109.70973 * 65.22373 * 12 11 10 34 34 H 1.08004 * 127.02044 * 359.96307 * 17 16 14 35 35 H 1.08008 * 125.43956 * 180.26595 * 18 17 16 36 36 H 1.08997 * 115.55359 * 154.44206 * 21 20 19 37 37 H 1.09001 * 117.49809 * 359.97438 * 22 21 20 38 38 H 1.08997 * 117.50003 * 145.02298 * 22 21 20 39 39 H 1.09001 * 117.49696 * 214.97435 * 23 21 20 40 40 H 1.09004 * 117.50044 * 359.97438 * 23 21 20 41 41 H 1.08995 * 109.58570 * 65.93178 * 24 13 12 42 42 H 1.09005 * 109.58509 * 186.35140 * 24 13 12 43 43 H 1.09002 * 109.49750 * 298.57290 * 25 10 9 44 44 H 1.08993 * 109.49864 * 58.66732 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4841 -4.9837 0.1240 12 6 2.4846 -6.1433 0.1569 13 7 3.3496 -6.0555 -1.0276 14 6 3.4906 -7.1103 -1.8546 15 8 2.8192 -8.1100 -1.6851 16 6 4.4586 -7.0521 -2.9645 17 6 5.7771 -6.4019 -2.9607 18 6 6.2963 -6.6136 -4.1797 19 8 5.4214 -7.3186 -4.9138 20 6 4.3168 -7.5875 -4.2112 21 6 3.1210 -8.3578 -4.7091 22 6 3.2452 -9.0566 -6.0645 23 6 2.3794 -7.8018 -5.9264 24 6 4.0625 -4.7979 -1.2898 25 6 3.0402 -3.6515 -1.3096 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6248 -2.5570 0.8896 29 1 2.9297 -3.5556 0.8399 30 1 0.8176 -5.1024 -0.7303 31 1 0.9000 -4.9810 1.0442 32 1 1.9461 -7.0910 0.1465 33 1 3.0928 -6.0786 1.0591 34 1 6.2361 -5.8672 -2.1422 35 1 7.2638 -6.2714 -4.5164 36 1 2.5270 -8.8522 -3.9405 37 1 4.1917 -8.9589 -6.5962 38 1 2.7326 -10.0106 -6.1877 39 1 1.2976 -7.9308 -5.9588 40 1 2.7562 -6.8786 -6.3669 41 1 4.7965 -4.6231 -0.5032 42 1 4.5656 -4.8575 -2.2551 43 1 2.3590 -3.7828 -2.1504 44 1 3.5634 -2.7006 -1.4097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568631464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:03 Heat of formation + Delta-G solvation = -24.660692 kcal Electronic energy + Delta-G solvation = -24916.245242 eV Core-core repulsion = 21413.793773 eV Total energy + Delta-G solvation = -3502.451469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.61687 -41.00613 -38.70852 -38.02935 -35.73039 -34.40266 -33.61779 -31.90966 -30.73025 -29.81978 -26.74102 -24.98217 -24.29756 -23.86702 -23.38064 -22.83633 -21.79491 -20.86777 -19.71617 -18.57420 -18.38478 -17.62677 -17.06028 -16.84965 -16.54532 -16.47095 -16.01643 -15.51038 -15.27453 -14.96046 -14.59465 -14.50633 -14.24069 -14.12452 -13.84415 -13.54879 -13.27702 -13.04720 -12.95073 -12.71940 -12.49875 -12.49163 -12.31710 -12.17528 -11.97582 -11.79426 -11.48605 -11.38249 -11.16167 -11.05624 -10.86198 -10.58501 -10.48083 -9.67732 -9.39897 -8.15405 -6.25347 0.34003 1.13659 1.42337 1.44903 1.52323 1.72214 1.93736 2.18241 2.43703 2.85875 3.18210 3.36732 3.53047 3.74388 3.91513 3.94956 3.98276 4.03937 4.09949 4.16445 4.22760 4.38667 4.49554 4.57505 4.64066 4.68045 4.71991 4.80870 4.83627 4.87865 4.95238 5.01995 5.04080 5.08981 5.14860 5.29624 5.31918 5.36903 5.39876 5.53834 5.59275 5.81045 5.89464 6.04273 6.28997 6.39533 6.91223 7.08607 7.43489 8.96516 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.003420 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.848101 B = 8185.949957 C = 8503.964725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.004 4.004 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.121 4.121 12 C 0.119 3.881 13 N -0.599 5.599 14 C 0.586 3.414 15 O -0.583 6.583 16 C -0.257 4.257 17 C -0.199 4.199 18 C -0.022 4.022 19 O -0.178 6.178 20 C 0.089 3.911 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.160 4.160 24 C 0.107 3.893 25 C -0.112 4.112 26 H 0.261 0.739 27 H -0.018 1.018 28 H -0.013 1.013 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.254 0.746 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.038 0.962 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -15.343 -10.299 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.087 0.913 9 C -0.004 4.004 10 C -0.091 4.091 11 C -0.159 4.159 12 C -0.003 4.003 13 N -0.330 5.330 14 C 0.377 3.623 15 O -0.465 6.465 16 C -0.261 4.261 17 C -0.218 4.218 18 C -0.087 4.087 19 O -0.074 6.074 20 C 0.036 3.964 21 C -0.137 4.137 22 C -0.181 4.181 23 C -0.197 4.197 24 C -0.015 4.015 25 C -0.150 4.150 26 H 0.069 0.931 27 H 0.000 1.000 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.196 0.804 35 H 0.270 0.730 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.057 0.943 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.517 -15.816 -10.481 23.296 hybrid contribution -0.395 1.300 0.589 1.481 sum 13.121 -14.516 -9.892 21.926 Atomic orbital electron populations 1.70115 1.07973 1.27577 1.52261 1.25988 0.95633 1.03356 0.95127 0.85557 0.78250 0.78308 0.79290 1.18926 1.21541 1.19066 1.21643 0.93666 0.91742 1.49493 0.91336 1.19011 0.94030 0.93221 0.94141 1.21047 0.97081 0.93409 0.97587 1.21905 0.97755 0.94591 1.01686 1.21617 0.92483 0.99006 0.87217 1.48040 1.46257 1.12982 1.25712 1.17634 0.81289 0.82312 0.81082 1.90695 1.48554 1.33314 1.73959 1.21101 0.99029 1.10441 0.95516 1.23153 0.93468 1.04767 1.00395 1.24743 0.96301 0.97250 0.90426 1.83715 1.23612 1.58107 1.41935 1.21707 0.87680 0.97427 0.89582 1.20717 0.94572 1.04462 0.93991 1.23151 1.02553 0.97466 0.94954 1.23186 0.99864 0.98866 0.97757 1.22289 0.94235 0.81280 1.03657 1.21852 0.97734 0.98438 0.96964 0.93062 0.99991 0.99501 0.91502 0.93896 0.90712 0.90027 0.89545 0.80443 0.73019 0.85493 0.87334 0.86013 0.86709 0.88280 0.89277 0.87649 0.94314 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.53 -28.79 8.39 25.60 0.21 -28.57 16 8 H 0.07 3.48 7.06 -2.91 -0.02 3.46 16 9 C 0.03 1.71 4.45 29.85 0.13 1.84 16 10 C -0.07 -2.85 2.10 -10.77 -0.02 -2.87 16 11 C -0.12 -4.24 5.36 30.67 0.16 -4.08 16 12 C 0.12 3.59 6.44 86.36 0.56 4.15 16 13 N -0.60 -18.12 2.97 -822.00 -2.44 -20.56 16 14 C 0.59 19.06 7.49 86.65 0.65 19.71 16 15 O -0.58 -22.15 15.10 -4.07 -0.06 -22.21 16 16 C -0.26 -6.97 5.44 -18.99 -0.10 -7.07 16 17 C -0.20 -3.85 8.68 23.64 0.21 -3.64 16 18 C -0.02 -0.34 12.03 66.89 0.80 0.47 16 19 O -0.18 -3.65 10.23 4.55 0.05 -3.61 16 20 C 0.09 2.24 6.85 25.26 0.17 2.41 16 21 C -0.12 -2.77 5.92 -11.54 -0.07 -2.84 16 22 C -0.14 -2.32 10.17 30.62 0.31 -2.01 16 23 C -0.16 -2.96 10.24 30.62 0.31 -2.65 16 24 C 0.11 2.87 5.51 86.51 0.48 3.35 16 25 C -0.11 -3.90 5.21 30.82 0.16 -3.74 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 28 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 33 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.18 2.66 7.25 -2.91 -0.02 2.64 16 35 H 0.25 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.13 3.47 6.91 -2.39 -0.02 3.45 16 37 H 0.11 1.59 7.96 -2.39 -0.02 1.57 16 38 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.11 2.50 4.56 -2.38 -0.01 2.49 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 2.81 6.91 -2.39 -0.02 2.79 16 Total: -1.00 -72.11 355.73 5.28 -66.83 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.99 Total: 16.46 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.43 Total: -25.32 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -2.15 Total: -77.51 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.01 Total: -25.81 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.11 5.28 -66.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568631464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.170 kcal (2) G-P(sol) polarization free energy of solvation -72.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds