Wall clock time and date at job start Tue Mar 31 2020 08:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86798 * 119.99888 * 2 1 4 4 H 1.48504 * 109.47063 * 240.00057 * 3 2 1 5 5 H 1.48504 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47344 * 119.99948 * 3 2 1 7 7 C 1.39963 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99441 * 175.66830 * 7 2 1 9 9 C 1.41073 * 119.99880 * 355.65887 * 7 2 1 10 10 C 1.40737 * 120.30052 * 34.97914 * 9 7 2 11 11 C 1.36459 * 119.94203 * 180.33786 * 10 9 7 12 12 C 1.38868 * 120.57739 * 359.66232 * 11 10 9 13 13 C 1.38220 * 120.61465 * 359.97438 * 12 11 10 14 14 C 1.38652 * 120.03437 * 0.04696 * 13 12 11 15 15 N 1.39117 * 120.28264 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00341 * 34.53739 * 15 14 13 17 17 O 1.21283 * 119.99826 * 355.81261 * 16 15 14 18 18 C 1.50695 * 120.00168 * 175.80950 * 16 15 14 19 19 H 1.09001 * 109.47070 * 55.00583 * 18 16 15 20 20 O 1.42905 * 109.47144 * 175.00119 * 18 16 15 21 21 C 1.53000 * 109.47492 * 295.00364 * 18 16 15 22 22 C 1.53003 * 109.46956 * 300.00204 * 21 18 16 23 23 C 1.53000 * 109.46956 * 180.02562 * 22 21 18 24 24 C 1.53002 * 109.47335 * 59.99819 * 23 22 21 25 25 C 1.52998 * 109.46936 * 300.00125 * 24 23 22 26 26 C 1.52995 * 109.47462 * 60.00022 * 25 24 23 27 27 H 0.96994 * 119.99961 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.02820 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.71040 * 179.67583 * 11 10 9 30 30 H 1.08001 * 119.68934 * 180.02562 * 12 11 10 31 31 H 1.07999 * 119.98530 * 180.02562 * 13 12 11 32 32 H 0.97004 * 120.00348 * 214.53737 * 15 14 13 33 33 H 0.96696 * 113.99643 * 59.99994 * 20 18 16 34 34 H 1.08999 * 109.47120 * 60.00072 * 21 18 16 35 35 H 1.09009 * 109.46838 * 299.99386 * 22 21 18 36 36 H 1.08993 * 109.47321 * 59.99531 * 22 21 18 37 37 H 1.08999 * 109.47120 * 299.99868 * 23 22 21 38 38 H 1.09004 * 109.46902 * 179.97438 * 23 22 21 39 39 H 1.08993 * 109.47169 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.46976 * 59.99961 * 24 23 22 41 41 H 1.08999 * 109.47153 * 299.99727 * 25 24 23 42 42 H 1.09002 * 109.47098 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.47392 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47178 * 59.99720 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 3.0962 1.6964 -1.2125 5 1 1.2774 2.7465 0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0084 -1.2121 -0.0005 8 1 3.0861 -1.2133 -0.0712 9 6 1.3060 -2.4321 0.0914 10 6 0.0459 -2.5737 -0.5190 11 6 -0.6302 -3.7549 -0.4197 12 6 -0.0828 -4.8259 0.2745 13 6 1.1564 -4.7151 0.8766 14 6 1.8653 -3.5264 0.7919 15 7 3.1127 -3.4090 1.3965 16 6 3.9407 -4.4713 1.4453 17 8 3.5695 -5.5490 1.0307 18 6 5.3276 -4.3202 2.0149 19 1 5.2640 -3.9065 3.0213 20 8 5.9640 -5.5987 2.0648 21 6 6.1438 -3.3786 1.1271 22 6 6.2332 -3.9593 -0.2856 23 6 7.0499 -3.0180 -1.1731 24 6 8.4580 -2.8651 -0.5945 25 6 8.3686 -2.2845 0.8181 26 6 7.5519 -3.2257 1.7057 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3879 -1.7467 -1.0614 29 1 -1.5993 -3.8578 -0.8851 30 1 -0.6302 -5.7544 0.3438 31 1 1.5727 -5.5546 1.4135 32 1 3.3867 -2.5625 1.7829 33 1 6.0548 -6.0268 1.2025 34 1 5.6584 -2.4034 1.0891 35 1 6.7187 -4.9345 -0.2475 36 1 5.2300 -4.0686 -0.6976 37 1 6.5649 -2.0426 -1.2113 38 1 7.1139 -3.4319 -2.1795 39 1 9.0397 -2.1942 -1.2266 40 1 8.9430 -3.8405 -0.5564 41 1 7.8836 -1.3091 0.7800 42 1 9.3718 -2.1752 1.2302 43 1 7.4886 -2.8123 2.7123 44 1 8.0369 -4.2012 1.7439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570056467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:41 Heat of formation + Delta-G solvation = -111.150326 kcal Electronic energy + Delta-G solvation = -25631.090229 eV Core-core repulsion = 22124.888289 eV Total energy + Delta-G solvation = -3506.201941 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68505 -39.89224 -38.74671 -36.96252 -35.49163 -35.47087 -32.51238 -31.65221 -31.47577 -30.35165 -27.79765 -26.85183 -23.86989 -23.42997 -22.86733 -22.26774 -21.02806 -20.50618 -19.33752 -18.79067 -17.89995 -17.52370 -17.03303 -16.40585 -16.12909 -15.93174 -15.61253 -15.30511 -14.97234 -14.86158 -14.55919 -14.48145 -14.20098 -13.69016 -13.61470 -13.25827 -13.06322 -13.01888 -12.83674 -12.80376 -12.70162 -12.21620 -12.14795 -12.03223 -11.90102 -11.81255 -11.61644 -11.35386 -11.16586 -11.05532 -10.90666 -10.85281 -10.25478 -9.24385 -8.80739 -8.45050 -6.36024 0.81958 1.06194 1.42354 1.52198 1.54027 1.74279 2.23448 2.36334 2.81233 3.25920 3.60387 3.65121 3.71591 3.77662 3.93813 4.20259 4.30665 4.39364 4.47771 4.49135 4.58070 4.61639 4.64108 4.67175 4.75432 4.75845 4.99676 5.10538 5.14202 5.21303 5.22407 5.28708 5.30326 5.34084 5.39497 5.42638 5.44386 5.60504 5.78589 5.86401 6.13272 6.17115 6.25773 6.47255 6.66058 6.75762 6.96432 7.01647 7.35823 8.42521 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.005871 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.213820 B = 4767.819444 C = 6493.781534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.070 3.930 10 C -0.164 4.164 11 C -0.124 4.124 12 C -0.221 4.221 13 C -0.109 4.109 14 C 0.018 3.982 15 N -0.631 5.631 16 C 0.471 3.529 17 O -0.572 6.572 18 C 0.110 3.890 19 H 0.142 0.858 20 O -0.541 6.541 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.119 4.119 26 C -0.101 4.101 27 H 0.284 0.716 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.412 0.588 33 H 0.384 0.616 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.201 0.194 2.215 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.067 3.933 10 C -0.184 4.184 11 C -0.143 4.143 12 C -0.240 4.240 13 C -0.129 4.129 14 C -0.076 4.076 15 N -0.275 5.275 16 C 0.260 3.740 17 O -0.452 6.452 18 C 0.047 3.953 19 H 0.159 0.841 20 O -0.347 6.347 21 C -0.126 4.126 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.156 4.156 26 C -0.139 4.139 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.249 0.751 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.831 -0.280 2.571 15.054 hybrid contribution -0.515 0.815 -0.675 1.177 sum 14.316 0.535 1.895 14.450 Atomic orbital electron populations 1.69844 1.08817 1.30049 1.37854 1.26715 0.95585 1.04210 0.91472 0.85245 0.78583 0.75726 0.80191 1.18717 1.20137 1.17605 1.19465 0.94866 0.90304 1.47085 0.90045 1.17781 0.93657 0.92358 0.89543 1.21204 0.97458 0.96825 1.02904 1.20772 0.99353 0.93824 1.00354 1.20675 0.97235 0.99134 1.06984 1.20816 0.94475 0.96634 1.00988 1.17987 0.88648 0.97160 1.03835 1.42920 1.14584 1.14343 1.55639 1.22336 0.88855 0.83811 0.78998 1.90631 1.77349 1.27715 1.49475 1.21940 0.85721 0.85844 1.01802 0.84083 1.86510 1.79413 1.32205 1.36606 1.21784 0.97792 0.98575 0.94449 1.21549 0.99174 0.99838 0.94974 1.21483 0.96383 0.99063 0.98484 1.21522 0.95553 1.01592 0.96550 1.21551 1.00519 0.98600 0.94944 1.21460 0.92558 1.00776 0.99064 0.90534 0.86657 0.87076 0.86846 0.87558 0.75116 0.76552 0.89866 0.90959 0.95053 0.92750 0.91997 0.91246 0.91445 0.92203 0.90380 0.90633 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.14 10.62 21.83 0.23 -41.91 16 2 C 0.03 1.57 5.42 85.26 0.46 2.03 16 3 Si 0.98 35.65 29.56 68.60 2.03 37.68 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 5 H -0.28 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 7 C -0.49 -23.98 8.22 23.38 0.19 -23.79 16 8 H 0.08 3.75 7.63 -2.91 -0.02 3.73 16 9 C 0.07 3.65 5.56 -21.18 -0.12 3.53 16 10 C -0.16 -8.58 8.61 22.47 0.19 -8.39 16 11 C -0.12 -5.94 9.97 22.01 0.22 -5.72 16 12 C -0.22 -10.32 10.04 22.42 0.22 -10.09 16 13 C -0.11 -5.31 8.69 22.36 0.19 -5.12 16 14 C 0.02 0.89 6.34 38.88 0.25 1.13 16 15 N -0.63 -24.98 4.92 -302.29 -1.49 -26.47 16 16 C 0.47 17.29 5.74 87.65 0.50 17.80 16 17 O -0.57 -25.26 13.74 15.95 0.22 -25.04 16 18 C 0.11 2.88 3.19 29.85 0.10 2.98 16 19 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 20 O -0.54 -14.49 12.28 -129.99 -1.60 -16.09 16 21 C -0.11 -2.42 2.04 -10.79 -0.02 -2.44 16 22 C -0.12 -2.93 4.65 30.60 0.14 -2.79 16 23 C -0.12 -2.55 5.92 30.59 0.18 -2.36 16 24 C -0.11 -1.93 5.92 30.59 0.18 -1.75 16 25 C -0.12 -1.89 5.92 30.59 0.18 -1.70 16 26 C -0.10 -1.76 5.06 30.59 0.15 -1.61 16 27 H 0.28 13.12 8.30 -92.71 -0.77 12.35 16 28 H 0.12 6.29 6.16 -2.91 -0.02 6.28 16 29 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.11 5.19 6.19 -2.91 -0.02 5.17 16 32 H 0.41 14.47 8.02 -92.71 -0.74 13.73 16 33 H 0.38 9.48 7.08 -74.06 -0.52 8.95 16 34 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 35 H 0.07 1.62 6.78 -2.38 -0.02 1.60 16 36 H 0.03 1.01 7.22 -2.39 -0.02 1.00 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.26 7.68 -2.39 -0.02 1.24 16 Total: -1.00 -61.82 348.10 2.18 -59.64 By element: Atomic # 1 Polarization: 50.73 SS G_CDS: -0.25 Total: 50.48 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 3.03 Total: -38.29 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.26 Total: -68.38 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.38 Total: -41.13 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Total: -61.82 2.18 -59.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570056467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.508 kcal (2) G-P(sol) polarization free energy of solvation -61.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds