Wall clock time and date at job start Tue Mar 31 2020 08:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30854 * 1 3 3 Si 1.86798 * 120.00085 * 2 1 4 4 H 1.48500 * 109.47200 * 85.00277 * 3 2 1 5 5 H 1.48502 * 109.46950 * 204.99741 * 3 2 1 6 6 H 1.48499 * 109.46945 * 324.99849 * 3 2 1 7 7 C 1.39958 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00240 * 214.85626 * 7 2 1 9 9 C 1.41072 * 120.00098 * 34.86357 * 7 2 1 10 10 C 1.40735 * 120.30195 * 5.64468 * 9 7 2 11 11 C 1.36462 * 119.94322 * 179.97438 * 10 9 7 12 12 C 1.38864 * 120.58120 * 0.02562 * 11 10 9 13 13 C 1.38228 * 120.61139 * 359.97438 * 12 11 10 14 14 C 1.38642 * 120.03193 * 359.74905 * 13 12 11 15 15 N 1.39135 * 120.28156 * 180.25572 * 14 13 12 16 16 C 1.34778 * 119.99996 * 24.79949 * 15 14 13 17 17 O 1.21277 * 120.00003 * 5.90724 * 16 15 14 18 18 C 1.50701 * 119.99842 * 185.91071 * 16 15 14 19 19 H 1.08996 * 109.47177 * 310.52866 * 18 16 15 20 20 O 1.42892 * 109.47377 * 190.52064 * 18 16 15 21 21 C 1.53007 * 109.47169 * 70.52100 * 18 16 15 22 22 C 1.53001 * 109.47165 * 304.62419 * 21 18 16 23 23 C 1.52998 * 109.47254 * 180.02562 * 22 21 18 24 24 C 1.52999 * 109.47377 * 59.99209 * 23 22 21 25 25 C 1.53006 * 109.47266 * 300.00510 * 24 23 22 26 26 C 1.52994 * 109.47182 * 59.99792 * 25 24 23 27 27 H 0.96996 * 119.99748 * 0.02562 * 1 2 3 28 28 H 1.08005 * 120.02724 * 359.95742 * 10 9 7 29 29 H 1.08004 * 119.71112 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.69344 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.97847 * 180.02562 * 13 12 11 32 32 H 0.97005 * 119.99728 * 204.80276 * 15 14 13 33 33 H 0.96702 * 114.00374 * 300.00632 * 20 18 16 34 34 H 1.09004 * 109.46871 * 64.61990 * 21 18 16 35 35 H 1.09004 * 109.46876 * 299.99568 * 22 21 18 36 36 H 1.08992 * 109.47723 * 59.99667 * 22 21 18 37 37 H 1.09004 * 109.46724 * 299.99536 * 23 22 21 38 38 H 1.08998 * 109.47588 * 179.97438 * 23 22 21 39 39 H 1.09003 * 109.46996 * 180.02562 * 24 23 22 40 40 H 1.09004 * 109.46927 * 60.00451 * 24 23 22 41 41 H 1.09004 * 109.47099 * 299.99835 * 25 24 23 42 42 H 1.09000 * 109.46934 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47430 * 179.97438 * 26 25 24 44 44 H 1.09004 * 109.47068 * 60.00024 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3844 2.1074 1.3947 5 1 3.5890 1.4119 -0.5917 6 1 1.4968 2.6198 -0.8031 7 6 2.0083 -1.2121 0.0005 8 1 2.9430 -1.2959 0.5351 9 6 1.4928 -2.3245 -0.6973 10 6 0.3393 -2.1916 -1.4926 11 6 -0.1528 -3.2723 -2.1649 12 6 0.4747 -4.5077 -2.0723 13 6 1.6089 -4.6647 -1.2980 14 6 2.1339 -3.5824 -0.6087 15 7 3.2784 -3.7334 0.1679 16 6 4.1547 -4.7195 -0.1079 17 8 4.0026 -5.4073 -1.0952 18 6 5.3235 -4.9676 0.8104 19 1 5.8355 -4.0261 1.0093 20 8 6.2306 -5.8815 0.1909 21 6 4.8202 -5.5623 2.1273 22 6 3.7630 -4.6373 2.7336 23 6 3.2602 -5.2317 4.0507 24 6 4.4310 -5.3760 5.0250 25 6 5.4882 -6.3011 4.4186 26 6 5.9910 -5.7066 3.1016 27 1 -0.4849 0.8400 -0.0004 28 1 -0.1562 -1.2351 -1.5704 29 1 -1.0385 -3.1662 -2.7738 30 1 0.0727 -5.3535 -2.6101 31 1 2.0889 -5.6301 -1.2335 32 1 3.4456 -3.1289 0.9080 33 1 5.8418 -6.7426 -0.0152 34 1 4.3809 -6.5420 1.9390 35 1 4.2023 -3.6577 2.9218 36 1 2.9292 -4.5342 2.0393 37 1 2.8210 -6.2115 3.8628 38 1 2.5074 -4.5726 4.4829 39 1 4.0728 -5.7999 5.9632 40 1 4.8702 -4.3962 5.2129 41 1 5.0490 -7.2809 4.2308 42 1 6.3220 -6.4042 5.1130 43 1 6.7445 -6.3653 2.6698 44 1 6.4302 -4.7268 3.2895 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570056468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:46 Heat of formation + Delta-G solvation = -86.241629 kcal Electronic energy + Delta-G solvation = -25548.531667 eV Core-core repulsion = 22043.409849 eV Total energy + Delta-G solvation = -3505.121819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35345 -38.41630 -37.26603 -35.90628 -33.97118 -33.84310 -31.55715 -30.72554 -29.71992 -28.53566 -26.34023 -25.19391 -22.70033 -22.15052 -21.52953 -20.61506 -20.00061 -19.34883 -17.68391 -17.33091 -16.35374 -16.19181 -15.64618 -15.15260 -14.57634 -14.44872 -14.21298 -14.10518 -13.91464 -13.55573 -13.02458 -12.84027 -12.73446 -12.52093 -12.32106 -12.13689 -11.90711 -11.59111 -11.42802 -11.27233 -11.20651 -11.15422 -10.98789 -10.88468 -10.57838 -10.47994 -10.27199 -10.03090 -9.94285 -9.75565 -9.29461 -9.05224 -8.61447 -7.60520 -7.15204 -6.80533 -4.37149 2.55649 2.77788 2.96819 3.00244 3.23086 3.42379 3.76630 3.81449 4.35285 4.41598 4.58443 4.66338 4.81348 5.04160 5.14719 5.19907 5.32832 5.44329 5.47807 5.52749 5.55868 5.64086 5.67578 5.85115 6.02459 6.07954 6.09313 6.10415 6.26512 6.35167 6.37475 6.41195 6.50015 6.61422 6.80767 7.00136 7.15780 7.29031 7.52696 7.58784 7.73587 7.95489 8.05135 8.14306 8.35206 8.50292 8.73279 8.78490 9.00552 9.85419 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.005007 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.404319 B = 5590.326367 C = 6535.062027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.089 3.911 3 Si 0.897 3.103 4 H -0.268 1.268 5 H -0.257 1.257 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.184 4.184 11 C -0.104 4.104 12 C -0.244 4.244 13 C -0.083 4.083 14 C -0.005 4.005 15 N -0.629 5.629 16 C 0.467 3.533 17 O -0.536 6.536 18 C 0.097 3.903 19 H 0.117 0.883 20 O -0.540 6.540 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.108 4.108 27 H 0.285 0.715 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.404 0.596 33 H 0.381 0.619 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.226 -5.390 9.182 12.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.380 5.380 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.193 1.193 5 H -0.181 1.181 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.097 3.903 10 C -0.204 4.204 11 C -0.122 4.122 12 C -0.264 4.264 13 C -0.103 4.103 14 C -0.099 4.099 15 N -0.273 5.273 16 C 0.253 3.747 17 O -0.415 6.415 18 C 0.034 3.966 19 H 0.135 0.865 20 O -0.344 6.344 21 C -0.128 4.128 22 C -0.176 4.176 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.145 4.145 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.130 0.870 32 H 0.241 0.759 33 H 0.229 0.771 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.341 -5.252 8.606 12.471 hybrid contribution -0.097 0.727 0.226 0.768 sum 7.244 -4.525 8.833 12.287 Atomic orbital electron populations 1.69928 1.08180 1.29962 1.29935 1.25940 0.94300 1.01723 0.91461 0.86475 0.81562 0.80653 0.79276 1.19349 1.18067 1.19708 1.19254 1.06331 0.94569 1.28916 0.90549 1.17323 0.91952 0.89268 0.91742 1.21086 0.99320 0.98727 1.01273 1.20436 0.98466 0.93925 0.99408 1.20225 1.00602 0.96998 1.08575 1.20686 0.95251 0.96943 0.97403 1.17559 0.92168 0.94455 1.05695 1.43258 1.20726 1.31228 1.32105 1.21389 0.84224 0.82195 0.86873 1.90627 1.74434 1.48650 1.27747 1.21901 0.89679 0.94803 0.90174 0.86512 1.86528 1.38113 1.27876 1.81919 1.21753 0.96844 1.00267 0.93946 1.21984 0.99206 0.98513 0.97865 1.21466 0.97485 1.01152 0.95138 1.21570 0.96260 0.99861 0.98129 1.21531 0.98400 0.99004 0.96661 1.21504 0.96892 1.01575 0.94542 0.90418 0.85518 0.89631 0.89487 0.86957 0.75892 0.77071 0.90491 0.91446 0.89423 0.92126 0.91630 0.92351 0.91971 0.92163 0.92178 0.91318 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.02 10.94 55.55 0.61 -17.42 16 2 C 0.09 2.05 4.96 -17.32 -0.09 1.97 16 3 Si 0.90 17.25 29.67 -169.99 -5.04 12.21 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.25 8.63 -37.86 -0.33 -11.58 16 8 H 0.08 1.72 6.65 -52.49 -0.35 1.37 16 9 C 0.10 2.58 5.72 -106.65 -0.61 1.97 16 10 C -0.18 -4.73 8.88 -39.28 -0.35 -5.08 16 11 C -0.10 -2.49 9.96 -39.99 -0.40 -2.89 16 12 C -0.24 -5.81 10.04 -39.35 -0.39 -6.20 16 13 C -0.08 -2.01 8.71 -39.44 -0.34 -2.35 16 14 C -0.01 -0.13 6.46 -83.17 -0.54 -0.67 16 15 N -0.63 -12.50 3.39 -9.47 -0.03 -12.53 16 16 C 0.47 8.76 6.60 -10.98 -0.07 8.69 16 17 O -0.54 -11.93 13.48 -14.13 -0.19 -12.12 16 18 C 0.10 1.38 3.01 -27.88 -0.08 1.29 16 19 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 20 O -0.54 -7.76 12.56 -54.92 -0.69 -8.45 16 21 C -0.11 -1.29 1.98 -90.62 -0.18 -1.47 16 22 C -0.14 -1.72 3.87 -26.73 -0.10 -1.82 16 23 C -0.11 -1.28 5.92 -26.73 -0.16 -1.43 16 24 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 25 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 26 C -0.11 -1.08 5.10 -26.73 -0.14 -1.22 16 27 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 28 H 0.13 3.29 5.56 -52.48 -0.29 3.00 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.70 5.80 -52.49 -0.30 2.40 16 32 H 0.40 7.21 5.42 -40.82 -0.22 6.98 16 33 H 0.38 4.70 8.73 45.56 0.40 5.10 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.79 7.99 -51.93 -0.41 0.37 16 36 H 0.09 1.33 5.49 -51.93 -0.29 1.05 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -28.54 344.19 -9.92 -38.45 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -5.66 Total: 17.99 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -4.10 Total: -23.33 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.58 Total: -29.94 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.88 Total: -20.57 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.04 Total: 12.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.54 -9.92 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570056468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.787 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds