Wall clock time and date at job start Tue Mar 31 2020 08:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86799 * 120.00339 * 2 1 4 4 H 1.48498 * 109.47285 * 267.71457 * 3 2 1 5 5 H 1.48500 * 109.46815 * 27.71557 * 3 2 1 6 6 H 1.48502 * 109.47057 * 147.71345 * 3 2 1 7 7 C 1.39956 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00194 * 350.35556 * 7 2 1 9 9 C 1.41072 * 120.00210 * 170.36585 * 7 2 1 10 10 C 1.40743 * 120.29701 * 324.64440 * 9 7 2 11 11 C 1.36458 * 119.94146 * 180.02562 * 10 9 7 12 12 C 1.38867 * 120.57915 * 359.72300 * 11 10 9 13 13 C 1.38224 * 120.61522 * 0.56190 * 12 11 10 14 14 C 1.38642 * 120.03142 * 359.44153 * 13 12 11 15 15 N 1.39126 * 120.28762 * 180.29853 * 14 13 12 16 16 C 1.34777 * 119.99907 * 326.73716 * 15 14 13 17 17 O 1.21288 * 119.99551 * 4.72546 * 16 15 14 18 18 C 1.50693 * 120.00464 * 184.72943 * 16 15 14 19 19 C 1.53004 * 109.47439 * 186.15720 * 18 16 15 20 20 O 1.42896 * 109.46969 * 303.73732 * 19 18 16 21 21 C 1.52995 * 109.47341 * 183.73817 * 19 18 16 22 22 C 1.52994 * 109.47327 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47412 * 59.99770 * 22 21 19 24 24 C 1.53004 * 109.47262 * 300.00356 * 23 22 21 25 25 C 1.52998 * 109.46970 * 63.73903 * 19 18 16 26 26 H 0.97004 * 119.99419 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.02562 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.71075 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.69355 * 180.30332 * 12 11 10 30 30 H 1.07995 * 119.98584 * 179.71791 * 13 12 11 31 31 H 0.96998 * 120.00779 * 146.73588 * 15 14 13 32 32 H 1.08999 * 109.47133 * 306.15507 * 18 16 15 33 33 H 1.08996 * 109.47227 * 66.15261 * 18 16 15 34 34 H 0.96696 * 114.00553 * 299.99933 * 20 19 18 35 35 H 1.09008 * 109.47220 * 300.00234 * 21 19 18 36 36 H 1.09000 * 109.47260 * 59.99693 * 21 19 18 37 37 H 1.09007 * 109.47149 * 299.99711 * 22 21 19 38 38 H 1.09007 * 109.47249 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.47746 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.47011 * 59.99857 * 23 22 21 41 41 H 1.08994 * 109.46922 * 299.99944 * 24 23 22 42 42 H 1.08998 * 109.46813 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.47065 * 299.99361 * 25 19 18 44 44 H 1.08994 * 109.47578 * 60.00169 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.5385 2.0184 -1.3989 5 1 1.4167 2.6661 0.6512 6 1 3.5151 1.4545 0.7479 7 6 2.0082 -1.2121 -0.0005 8 1 1.4796 -2.1409 0.1557 9 6 3.4040 -1.2208 -0.2050 10 6 3.9986 -0.2960 -1.0837 11 6 5.3495 -0.3112 -1.2765 12 6 6.1482 -1.2295 -0.6078 13 6 5.5883 -2.1520 0.2560 14 6 4.2187 -2.1593 0.4708 15 7 3.6502 -3.0814 1.3438 16 6 4.1849 -4.3126 1.4654 17 8 5.2104 -4.5889 0.8797 18 6 3.5087 -5.3460 2.3289 19 6 4.3909 -6.5929 2.4179 20 8 4.6667 -7.0761 1.1017 21 6 3.6638 -7.6762 3.2169 22 6 4.5462 -8.9228 3.3064 23 6 5.8600 -8.5685 4.0059 24 6 6.5872 -7.4851 3.2068 25 6 5.7050 -6.2390 3.1171 26 1 -0.4849 0.8401 0.0004 27 1 3.3864 0.4249 -1.6049 28 1 5.8018 0.3998 -1.9519 29 1 7.2164 -1.2256 -0.7673 30 1 6.2186 -2.8645 0.7672 31 1 2.8691 -2.8384 1.8650 32 1 3.3530 -4.9390 3.3281 33 1 2.5466 -5.6120 1.8912 34 1 3.8776 -7.3202 0.5989 35 1 3.4533 -7.3076 4.2210 36 1 2.7275 -7.9283 2.7189 37 1 4.7570 -9.2916 2.3026 38 1 4.0279 -9.6948 3.8753 39 1 6.4886 -9.4567 4.0701 40 1 5.6492 -8.1997 5.0098 41 1 6.7980 -7.8539 2.2031 42 1 7.5230 -7.2325 3.7054 43 1 6.2231 -5.4672 2.5477 44 1 5.4946 -5.8704 4.1210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579527705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:46 Heat of formation + Delta-G solvation = -85.714396 kcal Electronic energy + Delta-G solvation = -25268.527058 eV Core-core repulsion = 21763.428102 eV Total energy + Delta-G solvation = -3505.098956 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.23334 -38.86884 -37.23292 -34.96910 -33.80733 -33.56716 -31.62735 -30.79495 -30.42504 -28.91143 -26.92469 -24.99586 -22.78664 -22.37912 -21.52100 -20.46861 -19.73101 -19.42610 -17.47806 -16.99966 -16.48650 -15.86690 -15.60723 -15.25657 -15.08532 -14.38871 -14.24529 -14.01946 -13.74123 -13.46388 -13.32976 -13.04135 -12.78568 -12.39665 -12.31421 -12.16566 -11.98948 -11.66317 -11.57703 -11.56219 -11.07285 -10.96546 -10.93765 -10.72230 -10.64288 -10.46701 -10.01600 -9.90617 -9.83861 -9.72198 -9.35466 -9.14381 -8.74720 -7.62319 -7.08108 -6.92511 -4.53023 2.43347 2.65910 3.09282 3.14886 3.28994 3.36574 3.82552 3.96023 4.39662 4.52419 4.63595 4.66018 4.78587 5.05745 5.12795 5.17791 5.33773 5.36575 5.45439 5.55205 5.58898 5.60912 5.65914 5.79057 5.86539 6.01454 6.07470 6.10995 6.15089 6.18142 6.26714 6.35171 6.49581 6.49988 6.66845 6.75732 7.00614 7.19210 7.38389 7.52371 7.71989 7.80812 7.89317 8.02720 8.28461 8.31713 8.61222 8.74458 8.98424 10.09115 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.003796 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.857186 B = 7373.769952 C = 8160.825773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.458 4.458 8 H 0.089 0.911 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.093 4.093 12 C -0.220 4.220 13 C -0.081 4.081 14 C 0.039 3.961 15 N -0.645 5.645 16 C 0.499 3.501 17 O -0.514 6.514 18 C -0.172 4.172 19 C 0.157 3.843 20 O -0.533 6.533 21 C -0.146 4.146 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.113 4.113 25 C -0.110 4.110 26 H 0.284 0.716 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.405 0.595 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.365 0.635 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -11.401 8.240 14.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.132 4.132 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.170 1.170 7 C -0.487 4.487 8 H 0.107 0.893 9 C 0.077 3.923 10 C -0.241 4.241 11 C -0.112 4.112 12 C -0.240 4.240 13 C -0.101 4.101 14 C -0.056 4.056 15 N -0.288 5.288 16 C 0.286 3.714 17 O -0.390 6.390 18 C -0.212 4.212 19 C 0.115 3.885 20 O -0.336 6.336 21 C -0.184 4.184 22 C -0.151 4.151 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.148 4.148 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.240 0.760 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.211 0.789 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.740 -11.436 8.049 15.117 hybrid contribution -1.058 0.908 0.001 1.394 sum 4.682 -10.528 8.049 14.055 Atomic orbital electron populations 1.69643 1.07834 1.30055 1.36985 1.26067 0.94784 1.01354 0.91043 0.86330 0.80455 0.79779 0.79450 1.19545 1.22117 1.16996 1.19210 0.90401 0.95237 1.43900 0.89278 1.17588 0.93218 0.91870 0.89674 1.20753 0.94780 1.04703 1.03872 1.20397 0.94020 0.97922 0.98869 1.20387 0.97876 1.00798 1.04948 1.20850 0.93161 0.97524 0.98587 1.17715 0.91239 0.97952 0.98658 1.42997 1.32281 1.11645 1.41901 1.20383 0.85811 0.82429 0.82797 1.90672 1.23058 1.79087 1.46199 1.22472 1.00726 0.96603 1.01435 1.20779 0.94280 0.89599 0.83816 1.86694 1.35294 1.85867 1.25791 1.22250 0.98578 0.96469 1.01059 1.21420 0.95694 0.96675 1.01286 1.21551 0.96548 0.98707 0.98854 1.21413 0.97643 0.95123 1.00885 1.21606 0.94864 0.99069 0.99232 0.90549 0.87670 0.88809 0.88551 0.86374 0.75985 0.88739 0.88793 0.78883 0.91196 0.91766 0.91291 0.92495 0.92409 0.92473 0.91014 0.92566 0.89298 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.19 13.93 55.55 0.77 -20.42 16 2 C 0.08 2.15 5.48 -17.33 -0.09 2.05 16 3 Si 0.91 20.46 24.48 -169.99 -4.16 16.30 16 4 H -0.27 -5.92 6.51 56.52 0.37 -5.55 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.25 -5.67 6.90 56.52 0.39 -5.28 16 7 C -0.46 -11.75 8.76 -37.86 -0.33 -12.08 16 8 H 0.09 2.36 7.85 -52.48 -0.41 1.95 16 9 C 0.08 2.00 5.07 -106.65 -0.54 1.46 16 10 C -0.22 -5.32 7.04 -39.28 -0.28 -5.60 16 11 C -0.09 -2.06 9.97 -39.99 -0.40 -2.46 16 12 C -0.22 -4.80 10.04 -39.35 -0.39 -5.20 16 13 C -0.08 -1.84 8.70 -39.44 -0.34 -2.18 16 14 C 0.04 0.89 6.36 -83.17 -0.53 0.36 16 15 N -0.65 -12.64 4.98 -9.48 -0.05 -12.68 16 16 C 0.50 8.89 7.16 -10.99 -0.08 8.81 16 17 O -0.51 -10.68 10.55 -15.45 -0.16 -10.84 16 18 C -0.17 -2.19 4.94 -27.88 -0.14 -2.32 16 19 C 0.16 1.90 0.56 -90.62 -0.05 1.85 16 20 O -0.53 -7.45 10.12 -56.23 -0.57 -8.02 16 21 C -0.15 -1.38 4.92 -26.74 -0.13 -1.52 16 22 C -0.11 -1.06 5.78 -26.74 -0.15 -1.21 16 23 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 24 C -0.11 -1.31 5.78 -26.75 -0.15 -1.47 16 25 C -0.11 -1.42 4.67 -26.76 -0.12 -1.55 16 26 H 0.28 6.73 8.30 -40.82 -0.34 6.40 16 27 H 0.11 2.51 4.65 -52.49 -0.24 2.26 16 28 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.12 2.65 6.08 -52.49 -0.32 2.33 16 31 H 0.40 7.29 8.07 -40.82 -0.33 6.96 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.37 4.05 9.05 45.56 0.41 4.46 16 35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.70 7.68 -51.93 -0.40 0.30 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.43 6.07 -51.92 -0.32 1.12 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -29.54 340.51 -8.77 -38.31 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -5.84 Total: 14.58 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.90 Total: -22.35 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.73 Total: -33.10 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.73 Total: -18.86 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.16 Total: 16.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.54 -8.77 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579527705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.407 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds