Wall clock time and date at job start Tue Mar 31 2020 08:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86799 * 120.00339 * 2 1 4 4 H 1.48498 * 109.47285 * 267.71457 * 3 2 1 5 5 H 1.48500 * 109.46815 * 27.71557 * 3 2 1 6 6 H 1.48502 * 109.47057 * 147.71345 * 3 2 1 7 7 C 1.39956 * 119.99648 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00194 * 350.35556 * 7 2 1 9 9 C 1.41072 * 120.00210 * 170.36585 * 7 2 1 10 10 C 1.40743 * 120.29701 * 324.64440 * 9 7 2 11 11 C 1.36458 * 119.94146 * 180.02562 * 10 9 7 12 12 C 1.38867 * 120.57915 * 359.72300 * 11 10 9 13 13 C 1.38224 * 120.61522 * 0.56190 * 12 11 10 14 14 C 1.38642 * 120.03142 * 359.44153 * 13 12 11 15 15 N 1.39126 * 120.28762 * 180.29853 * 14 13 12 16 16 C 1.34777 * 119.99907 * 326.73716 * 15 14 13 17 17 O 1.21288 * 119.99551 * 4.72546 * 16 15 14 18 18 C 1.50693 * 120.00464 * 184.72943 * 16 15 14 19 19 C 1.53004 * 109.47439 * 186.15720 * 18 16 15 20 20 O 1.42896 * 109.46969 * 303.73732 * 19 18 16 21 21 C 1.52995 * 109.47341 * 183.73817 * 19 18 16 22 22 C 1.52994 * 109.47327 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.47412 * 59.99770 * 22 21 19 24 24 C 1.53004 * 109.47262 * 300.00356 * 23 22 21 25 25 C 1.52998 * 109.46970 * 63.73903 * 19 18 16 26 26 H 0.97004 * 119.99419 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.02562 * 0.02562 * 10 9 7 28 28 H 1.07999 * 119.71075 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.69355 * 180.30332 * 12 11 10 30 30 H 1.07995 * 119.98584 * 179.71791 * 13 12 11 31 31 H 0.96998 * 120.00779 * 146.73588 * 15 14 13 32 32 H 1.08999 * 109.47133 * 306.15507 * 18 16 15 33 33 H 1.08996 * 109.47227 * 66.15261 * 18 16 15 34 34 H 0.96696 * 114.00553 * 299.99933 * 20 19 18 35 35 H 1.09008 * 109.47220 * 300.00234 * 21 19 18 36 36 H 1.09000 * 109.47260 * 59.99693 * 21 19 18 37 37 H 1.09007 * 109.47149 * 299.99711 * 22 21 19 38 38 H 1.09007 * 109.47249 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.47746 * 179.97438 * 23 22 21 40 40 H 1.09007 * 109.47011 * 59.99857 * 23 22 21 41 41 H 1.08994 * 109.46922 * 299.99944 * 24 23 22 42 42 H 1.08998 * 109.46813 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.47065 * 299.99361 * 25 19 18 44 44 H 1.08994 * 109.47578 * 60.00169 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.5385 2.0184 -1.3989 5 1 1.4167 2.6661 0.6512 6 1 3.5151 1.4545 0.7479 7 6 2.0082 -1.2121 -0.0005 8 1 1.4796 -2.1409 0.1557 9 6 3.4040 -1.2208 -0.2050 10 6 3.9986 -0.2960 -1.0837 11 6 5.3495 -0.3112 -1.2765 12 6 6.1482 -1.2295 -0.6078 13 6 5.5883 -2.1520 0.2560 14 6 4.2187 -2.1593 0.4708 15 7 3.6502 -3.0814 1.3438 16 6 4.1849 -4.3126 1.4654 17 8 5.2104 -4.5889 0.8797 18 6 3.5087 -5.3460 2.3289 19 6 4.3909 -6.5929 2.4179 20 8 4.6667 -7.0761 1.1017 21 6 3.6638 -7.6762 3.2169 22 6 4.5462 -8.9228 3.3064 23 6 5.8600 -8.5685 4.0059 24 6 6.5872 -7.4851 3.2068 25 6 5.7050 -6.2390 3.1171 26 1 -0.4849 0.8401 0.0004 27 1 3.3864 0.4249 -1.6049 28 1 5.8018 0.3998 -1.9519 29 1 7.2164 -1.2256 -0.7673 30 1 6.2186 -2.8645 0.7672 31 1 2.8691 -2.8384 1.8650 32 1 3.3530 -4.9390 3.3281 33 1 2.5466 -5.6120 1.8912 34 1 3.8776 -7.3202 0.5989 35 1 3.4533 -7.3076 4.2210 36 1 2.7275 -7.9283 2.7189 37 1 4.7570 -9.2916 2.3026 38 1 4.0279 -9.6948 3.8753 39 1 6.4886 -9.4567 4.0701 40 1 5.6492 -8.1997 5.0098 41 1 6.7980 -7.8539 2.2031 42 1 7.5230 -7.2325 3.7054 43 1 6.2231 -5.4672 2.5477 44 1 5.4946 -5.8704 4.1210 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579527705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:45 Heat of formation + Delta-G solvation = -103.686739 kcal Electronic energy + Delta-G solvation = -25269.306397 eV Core-core repulsion = 21763.428102 eV Total energy + Delta-G solvation = -3505.878295 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53934 -40.18350 -38.80290 -35.93584 -35.51583 -35.34091 -32.71919 -32.27916 -31.63715 -30.47104 -28.10616 -26.79007 -23.94710 -23.61943 -22.90041 -21.96324 -20.93993 -20.61840 -19.34816 -18.55073 -17.88053 -17.16691 -16.83096 -16.46364 -16.46195 -15.82687 -15.51735 -15.30662 -15.13684 -15.01160 -14.54432 -14.44613 -14.23317 -13.91382 -13.63038 -13.41533 -13.15801 -13.00862 -12.80761 -12.71817 -12.62685 -12.41298 -12.38776 -11.93378 -11.77762 -11.63688 -11.57244 -11.34681 -11.12886 -10.93193 -10.86649 -10.68220 -10.21587 -9.46926 -8.86266 -8.78306 -6.46276 0.68713 0.81981 1.29648 1.38984 1.50055 1.88024 2.14456 2.44742 2.65828 3.43700 3.48255 3.65859 3.79408 3.91439 4.06697 4.21642 4.29809 4.32595 4.41580 4.47711 4.56348 4.63998 4.65398 4.69710 4.74692 4.82266 4.85530 4.95926 4.98253 5.10712 5.17689 5.25805 5.30965 5.34212 5.35509 5.42847 5.50943 5.62558 5.63130 5.73705 5.98649 5.99675 6.15465 6.40171 6.63745 6.84539 6.90086 7.00680 7.47813 8.24219 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.003796 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.857186 B = 7373.769952 C = 8160.825773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.053 3.947 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.476 4.476 8 H 0.066 0.934 9 C 0.057 3.943 10 C -0.235 4.235 11 C -0.099 4.099 12 C -0.211 4.211 13 C -0.098 4.098 14 C 0.037 3.963 15 N -0.650 5.650 16 C 0.497 3.503 17 O -0.544 6.544 18 C -0.164 4.164 19 C 0.156 3.844 20 O -0.557 6.557 21 C -0.138 4.138 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.111 4.111 25 C -0.113 4.113 26 H 0.291 0.709 27 H 0.105 0.895 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.411 0.589 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.375 0.625 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -11.876 9.361 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.160 4.160 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.506 4.506 8 H 0.084 0.916 9 C 0.053 3.947 10 C -0.254 4.254 11 C -0.118 4.118 12 C -0.230 4.230 13 C -0.118 4.118 14 C -0.058 4.058 15 N -0.294 5.294 16 C 0.286 3.714 17 O -0.422 6.422 18 C -0.204 4.204 19 C 0.114 3.886 20 O -0.363 6.363 21 C -0.176 4.176 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.150 4.150 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.247 0.753 32 H 0.139 0.861 33 H 0.131 0.869 34 H 0.222 0.778 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.234 -11.930 9.177 16.291 hybrid contribution -1.049 0.953 -0.368 1.465 sum 5.185 -10.977 8.809 14.999 Atomic orbital electron populations 1.69668 1.08708 1.31071 1.38740 1.26605 0.95289 1.03458 0.90693 0.85602 0.79040 0.77239 0.79650 1.18705 1.20849 1.18094 1.19137 0.90974 0.94771 1.45719 0.91555 1.17751 0.93078 0.93187 0.90640 1.20936 0.95894 1.04727 1.03876 1.20733 0.93310 0.98530 0.99224 1.20808 0.99457 0.99467 1.03315 1.21029 0.93107 0.98181 0.99487 1.17966 0.91545 0.97807 0.98457 1.43142 1.32571 1.12029 1.41634 1.21297 0.85273 0.82348 0.82504 1.90658 1.24554 1.79479 1.47507 1.22550 1.00962 0.95158 1.01685 1.20894 0.94019 0.90131 0.83506 1.86672 1.36542 1.86051 1.27022 1.22195 0.98669 0.95342 1.01407 1.21427 0.95678 0.97065 1.00857 1.21538 0.96607 0.98164 0.98986 1.21373 0.98067 0.95392 1.00031 1.21607 0.95319 0.98533 0.99574 0.89841 0.87738 0.85473 0.85683 0.86421 0.75303 0.86092 0.86913 0.77770 0.89594 0.90388 0.92617 0.90554 0.91552 0.91134 0.93451 0.92198 0.93159 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.87 13.93 21.83 0.30 -44.56 16 2 C 0.05 2.73 5.48 85.26 0.47 3.20 16 3 Si 0.96 41.86 24.48 68.60 1.68 43.54 16 4 H -0.26 -10.96 6.51 99.48 0.65 -10.32 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.26 -11.53 6.90 99.48 0.69 -10.84 16 7 C -0.48 -25.00 8.76 23.38 0.20 -24.79 16 8 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 9 C 0.06 2.87 5.07 -21.18 -0.11 2.76 16 10 C -0.23 -11.11 7.04 22.47 0.16 -10.95 16 11 C -0.10 -4.19 9.97 22.00 0.22 -3.97 16 12 C -0.21 -8.81 10.04 22.42 0.22 -8.58 16 13 C -0.10 -4.40 8.70 22.36 0.19 -4.20 16 14 C 0.04 1.74 6.36 38.88 0.25 1.99 16 15 N -0.65 -25.63 4.98 -302.28 -1.51 -27.14 16 16 C 0.50 17.61 7.16 87.65 0.63 18.23 16 17 O -0.54 -22.91 10.55 17.02 0.18 -22.73 16 18 C -0.16 -3.89 4.94 29.85 0.15 -3.74 16 19 C 0.16 3.55 0.56 -10.79 -0.01 3.54 16 20 O -0.56 -15.44 10.12 -128.90 -1.31 -16.74 16 21 C -0.14 -2.21 4.92 30.59 0.15 -2.06 16 22 C -0.11 -1.81 5.78 30.59 0.18 -1.63 16 23 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 24 C -0.11 -2.50 5.78 30.58 0.18 -2.32 16 25 C -0.11 -2.83 4.67 30.58 0.14 -2.68 16 26 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 27 H 0.10 4.89 4.65 -2.91 -0.01 4.88 16 28 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 30 H 0.12 5.29 6.08 -2.91 -0.02 5.27 16 31 H 0.41 14.95 8.07 -92.71 -0.75 14.20 16 32 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.38 8.14 9.05 -74.06 -0.67 7.47 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.05 7.68 -2.38 -0.02 1.03 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.05 1.28 7.68 -2.39 -0.02 1.26 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.05 1.65 6.07 -2.38 -0.01 1.64 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -64.78 340.51 2.08 -62.70 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.47 Total: 41.91 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 3.21 Total: -36.97 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.20 Total: -71.70 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.13 Total: -39.48 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.68 Total: 43.54 kcal Total: -64.78 2.08 -62.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579527705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.989 kcal (2) G-P(sol) polarization free energy of solvation -64.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds