Wall clock time and date at job start Tue Mar 31 2020 08:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.51191 * 113.03382 * 2 1 4 4 O 1.21220 * 125.28723 * 303.41058 * 3 2 1 5 5 N 1.33796 * 109.43095 * 123.66942 * 3 2 1 6 6 C 1.46504 * 122.72899 * 179.75686 * 5 3 2 7 7 C 1.52999 * 109.46951 * 84.67810 * 6 5 3 8 8 C 1.50701 * 115.54809 * 269.81732 * 7 6 5 9 9 H 1.08004 * 120.00250 * 115.38698 * 8 7 6 10 10 C 1.37877 * 120.00067 * 295.37958 * 8 7 6 11 11 N 1.31513 * 119.99632 * 354.05719 * 10 8 7 12 12 Si 1.86797 * 120.00214 * 174.05628 * 10 8 7 13 13 H 1.48504 * 109.46908 * 90.00061 * 12 10 8 14 14 H 1.48498 * 109.47548 * 210.00102 * 12 10 8 15 15 H 1.48497 * 109.47154 * 330.00404 * 12 10 8 16 16 C 1.53001 * 117.49844 * 124.10785 * 7 6 5 17 17 C 1.53003 * 60.00141 * 252.50629 * 16 7 6 18 18 C 1.33787 * 114.53398 * 359.58676 * 5 3 2 19 19 O 1.21225 * 125.28354 * 180.17623 * 18 5 3 20 20 C 1.51190 * 109.42489 * 0.45337 * 18 5 3 21 21 H 1.09000 * 113.62832 * 236.65413 * 20 18 5 22 22 C 1.55827 * 108.40166 * 110.15253 * 20 18 5 23 23 H 1.09002 * 116.47125 * 89.89286 * 22 20 18 24 24 C 1.55923 * 104.57547 * 320.61618 * 22 20 18 25 25 C 1.54572 * 104.64209 * 289.53719 * 24 22 20 26 26 C 1.55838 * 112.99517 * 236.41002 * 2 1 3 27 27 H 1.09005 * 115.86092 * 35.75826 * 26 2 1 28 28 C 1.56903 * 100.76208 * 269.52767 * 26 2 1 29 29 H 1.09003 * 109.46744 * 61.60950 * 1 2 3 30 30 H 1.08999 * 109.47152 * 181.60154 * 1 2 3 31 31 H 1.09002 * 109.47087 * 301.60893 * 1 2 3 32 32 H 1.08999 * 109.47029 * 204.67810 * 6 5 3 33 33 H 1.08995 * 109.47242 * 324.67847 * 6 5 3 34 34 H 0.97010 * 119.99916 * 185.03272 * 11 10 8 35 35 H 1.08994 * 117.49984 * 359.97438 * 16 7 6 36 36 H 1.09002 * 117.49948 * 145.02082 * 16 7 6 37 37 H 1.08989 * 117.50407 * 252.51140 * 17 16 7 38 38 H 1.09006 * 117.49559 * 107.48713 * 17 16 7 39 39 H 1.09004 * 110.39845 * 48.32788 * 24 22 20 40 40 H 1.09001 * 110.39972 * 170.62892 * 24 22 20 41 41 H 1.09005 * 110.40445 * 241.23395 * 25 24 22 42 42 H 1.09002 * 110.40100 * 118.81523 * 25 24 22 43 43 H 1.08996 * 112.03060 * 63.03449 * 28 26 2 44 44 H 1.09004 * 112.02383 * 189.55278 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.3914 0.0000 4 8 1.8941 2.2490 -0.8260 5 7 2.9395 1.5273 1.0501 6 6 3.6733 2.7646 1.3277 7 6 2.7757 3.7251 2.1103 8 6 1.9461 4.6659 1.2749 9 1 0.8686 4.5941 1.2898 10 6 2.5627 5.6183 0.4916 11 7 3.8655 5.7842 0.5614 12 14 1.5478 6.6732 -0.6688 13 1 1.1037 7.9009 0.0389 14 1 2.3728 7.0505 -1.8444 15 1 0.3598 5.9068 -1.1232 16 6 3.2965 4.2436 3.4523 17 6 2.1645 3.2148 3.4169 18 6 3.0298 0.4425 1.8279 19 8 3.7092 0.3525 2.8278 20 6 2.1583 -0.6558 1.2623 21 1 1.4154 -1.0304 1.9665 22 6 3.0828 -1.7767 0.6993 23 1 3.3657 -2.5677 1.3940 24 6 4.2612 -1.0110 0.0239 25 6 3.6360 -0.3602 -1.2311 26 6 2.1388 -0.7937 -1.1950 27 1 1.5918 -0.7304 -2.1358 28 6 2.2649 -2.2241 -0.5628 29 1 -0.3633 0.4887 -0.9041 30 1 -0.3633 -1.0272 0.0287 31 1 -0.3633 0.5386 0.8752 32 1 4.5615 2.5359 1.9166 33 1 3.9704 3.2294 0.3877 34 1 4.2903 6.5019 0.0659 35 1 4.2784 3.9000 3.7777 36 1 3.0393 5.2655 3.7311 37 1 1.1627 3.5598 3.6724 38 1 2.4020 2.1947 3.7189 39 1 4.6510 -0.2454 0.6948 40 1 5.0523 -1.7051 -0.2599 41 1 4.1185 -0.7349 -2.1338 42 1 3.7188 0.7253 -1.1774 43 1 1.2937 -2.6395 -0.2943 44 1 2.8332 -2.9033 -1.1984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596299254.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:08 Heat of formation + Delta-G solvation = -23.340061 kcal Electronic energy + Delta-G solvation = -27317.678723 eV Core-core repulsion = 23815.284521 eV Total energy + Delta-G solvation = -3502.394202 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.81220 -38.61596 -38.00179 -36.35778 -34.66310 -32.56271 -31.95523 -30.10290 -28.63737 -27.33094 -25.76579 -24.92846 -23.78948 -21.55236 -21.15942 -20.44780 -19.40554 -19.21792 -18.52246 -16.93475 -16.55092 -15.86867 -15.79336 -15.38843 -14.59119 -14.46462 -14.15423 -13.93520 -13.61284 -13.45484 -13.18714 -12.77990 -12.67884 -12.28743 -12.12749 -11.97859 -11.68516 -11.39232 -11.30363 -11.24518 -11.09405 -10.98470 -10.84334 -10.78194 -10.72055 -10.44881 -10.25720 -10.18425 -9.96915 -9.65319 -9.26542 -8.87990 -8.74892 -8.47404 -8.13231 -6.00501 -4.03376 2.09924 3.15603 3.34072 3.37202 3.41322 3.48458 3.97954 4.21766 4.37055 4.46799 4.54996 4.67446 4.87013 4.96881 5.09879 5.17412 5.19786 5.22333 5.29238 5.41201 5.45828 5.60971 5.65174 5.73778 5.78147 5.90780 5.91091 5.99346 6.00708 6.04424 6.10518 6.16891 6.22234 6.25589 6.30040 6.40520 6.66857 6.71994 6.98726 7.05785 7.32397 7.43886 7.67225 7.92415 7.97386 8.42673 8.49566 8.93209 9.61084 11.08406 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.018233 B = 0.006425 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.349840 B = 4356.915351 C = 4993.170217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.100 4.100 3 C 0.537 3.463 4 O -0.454 6.454 5 N -0.557 5.557 6 C 0.142 3.858 7 C 0.036 3.964 8 C -0.481 4.481 9 H 0.056 0.944 10 C 0.076 3.924 11 N -0.885 5.885 12 Si 0.891 3.109 13 H -0.283 1.283 14 H -0.286 1.286 15 H -0.272 1.272 16 C -0.164 4.164 17 C -0.208 4.208 18 C 0.536 3.464 19 O -0.498 6.498 20 C -0.124 4.124 21 H 0.124 0.876 22 C -0.081 4.081 23 H 0.111 0.889 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.077 4.077 27 H 0.111 0.889 28 C -0.118 4.118 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.260 0.740 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 -17.052 -2.700 17.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C 0.324 3.676 4 O -0.324 6.324 5 N -0.297 5.297 6 C 0.022 3.978 7 C 0.034 3.966 8 C -0.518 4.518 9 H 0.074 0.926 10 C -0.127 4.127 11 N -0.522 5.522 12 Si 0.719 3.281 13 H -0.210 1.210 14 H -0.212 1.212 15 H -0.196 1.196 16 C -0.202 4.202 17 C -0.246 4.246 18 C 0.325 3.675 19 O -0.373 6.373 20 C -0.145 4.145 21 H 0.142 0.858 22 C -0.100 4.100 23 H 0.129 0.871 24 C -0.173 4.173 25 C -0.175 4.175 26 C -0.096 4.096 27 H 0.129 0.871 28 C -0.155 4.155 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.351 -16.470 -2.774 16.867 hybrid contribution -0.353 0.920 -0.403 1.065 sum -2.704 -15.550 -3.177 16.100 Atomic orbital electron populations 1.21488 0.90411 1.02445 1.03584 1.22624 0.98030 0.93515 0.96175 1.20195 0.78121 0.88780 0.80540 1.90788 1.58033 1.45555 1.37975 1.46833 1.42185 1.15399 1.25307 1.21565 0.92723 0.80562 1.02917 1.19118 0.96595 0.95323 0.85514 1.20326 0.91962 1.15339 1.24189 0.92575 1.24876 0.94785 0.96967 0.96035 1.69942 1.08806 1.31210 1.42221 0.86587 0.80547 0.80114 0.80827 1.20965 1.21185 1.19631 1.22734 0.95339 0.97272 1.04904 1.22905 0.97467 0.97544 1.06664 1.20328 0.81212 0.83769 0.82167 1.90707 1.41032 1.81996 1.23529 1.23286 0.98363 0.95569 0.97317 0.85768 1.23434 0.94443 0.95525 0.96590 0.87081 1.22875 0.97646 0.99654 0.97159 1.22870 0.94972 1.01287 0.98334 1.23490 0.95424 0.94251 0.96433 0.87067 1.23603 1.00047 0.95968 0.95879 0.90933 0.91248 0.91711 0.91733 0.87904 0.92980 0.91669 0.90060 0.90708 0.91185 0.91217 0.90824 0.90775 0.90902 0.90467 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.10 37.16 0.34 -1.10 16 2 C -0.10 -1.38 0.85 -152.57 -0.13 -1.50 16 3 C 0.54 10.32 4.22 -11.18 -0.05 10.28 16 4 O -0.45 -10.52 17.28 5.61 0.10 -10.43 16 5 N -0.56 -11.16 2.01 -115.49 -0.23 -11.39 16 6 C 0.14 3.35 5.39 -4.04 -0.02 3.33 16 7 C 0.04 0.90 1.56 -155.66 -0.24 0.66 16 8 C -0.48 -13.38 8.73 -34.44 -0.30 -13.69 16 9 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 10 C 0.08 2.13 5.21 -17.82 -0.09 2.04 16 11 N -0.88 -25.27 12.54 55.43 0.70 -24.57 16 12 Si 0.89 22.18 29.54 -169.99 -5.02 17.15 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 16 C -0.16 -3.96 9.88 -26.73 -0.26 -4.23 16 17 C -0.21 -4.79 9.64 -26.73 -0.26 -5.05 16 18 C 0.54 9.59 3.94 -11.19 -0.04 9.55 16 19 O -0.50 -10.09 16.27 5.61 0.09 -10.00 16 20 C -0.12 -1.64 3.65 -88.69 -0.32 -1.96 16 21 H 0.12 1.39 8.02 -51.93 -0.42 0.97 16 22 C -0.08 -0.87 4.96 -85.43 -0.42 -1.29 16 23 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 24 C -0.14 -1.70 5.84 -24.34 -0.14 -1.84 16 25 C -0.14 -1.78 5.84 -24.35 -0.14 -1.93 16 26 C -0.08 -0.88 4.48 -85.44 -0.38 -1.26 16 27 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 28 C -0.12 -1.02 6.42 -22.50 -0.14 -1.16 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.50 7.44 -51.93 -0.39 1.12 16 33 H 0.10 2.70 7.02 -51.93 -0.36 2.34 16 34 H 0.26 7.15 8.32 -40.82 -0.34 6.81 16 35 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 36 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 37 H 0.07 1.69 8.14 -51.94 -0.42 1.26 16 38 H 0.07 1.56 6.38 -51.93 -0.33 1.23 16 39 H 0.07 1.09 5.65 -51.93 -0.29 0.79 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.21 5.65 -51.93 -0.29 0.92 16 43 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -31.60 342.04 -8.51 -40.11 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.67 Total: 3.13 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.62 Total: -9.17 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.46 Total: -35.96 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: 0.19 Total: -20.43 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -8.51 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596299254.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.771 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds