Wall clock time and date at job start Tue Mar 31 2020 07:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48498 * 109.47407 * 269.99906 * 3 2 1 5 5 H 1.48493 * 109.47370 * 30.00416 * 3 2 1 6 6 H 1.48507 * 109.46999 * 150.00223 * 3 2 1 7 7 C 1.37877 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99719 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49882 * 300.06449 * 9 7 2 11 11 C 1.53040 * 109.49890 * 60.16261 * 9 7 2 12 12 C 1.53040 * 109.54168 * 181.31526 * 11 9 7 13 13 C 1.53196 * 109.31192 * 298.63761 * 12 11 9 14 14 N 1.46924 * 108.77435 * 54.63109 * 13 12 11 15 15 C 1.34775 * 120.62872 * 126.37074 * 14 13 12 16 16 O 1.21281 * 120.00217 * 355.38599 * 15 14 13 17 17 C 1.50702 * 119.99979 * 175.38138 * 15 14 13 18 18 H 1.08993 * 109.47374 * 52.78236 * 17 15 14 19 19 O 1.42899 * 109.47256 * 172.78196 * 17 15 14 20 20 C 1.52999 * 109.47157 * 292.78066 * 17 15 14 21 21 C 1.50701 * 109.47220 * 175.46814 * 20 17 15 22 22 C 1.38233 * 119.99691 * 269.72653 * 21 20 17 23 23 C 1.38238 * 119.99309 * 179.74400 * 22 21 20 24 24 C 1.38231 * 120.00475 * 0.53264 * 23 22 21 25 25 C 1.38243 * 119.99723 * 359.74306 * 24 23 22 26 26 C 1.38227 * 120.00089 * 359.97438 * 25 24 23 27 27 C 1.46928 * 118.74131 * 306.39044 * 14 13 12 28 28 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 29 29 H 1.09007 * 109.45846 * 61.29595 * 11 9 7 30 30 H 1.09002 * 109.45931 * 301.33749 * 11 9 7 31 31 H 1.08998 * 109.49932 * 178.68143 * 12 11 9 32 32 H 1.09003 * 109.49246 * 58.58257 * 12 11 9 33 33 H 1.09001 * 109.58328 * 174.42043 * 13 12 11 34 34 H 1.08997 * 109.58230 * 294.70286 * 13 12 11 35 35 H 0.96705 * 114.00240 * 59.99944 * 19 17 15 36 36 H 1.09005 * 109.47188 * 295.46922 * 20 17 15 37 37 H 1.09006 * 109.47408 * 55.46750 * 20 17 15 38 38 H 1.07992 * 120.00473 * 359.97438 * 22 21 20 39 39 H 1.08000 * 119.99781 * 180.29870 * 23 22 21 40 40 H 1.07998 * 120.00418 * 179.77034 * 24 23 22 41 41 H 1.07999 * 119.99785 * 180.02562 * 25 24 23 42 42 H 1.07997 * 120.00501 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.58567 * 173.39790 * 27 14 13 44 44 H 1.08994 * 109.58512 * 293.82565 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3735 -2.5824 -1.2516 12 6 -0.4170 -3.8927 -1.2362 13 6 0.5591 -5.0734 -1.2508 14 7 1.4999 -4.9230 -0.1324 15 6 1.6751 -5.9208 0.7565 16 8 0.9934 -6.9215 0.6870 17 6 2.7181 -5.7931 1.8367 18 1 2.5704 -4.8573 2.3756 19 8 2.5996 -6.8897 2.7453 20 6 4.1112 -5.8031 1.2043 21 6 5.1488 -5.5640 2.2708 22 6 5.5513 -4.2752 2.5668 23 6 6.4992 -4.0556 3.5488 24 6 7.0526 -5.1255 4.2270 25 6 6.6541 -6.4148 3.9269 26 6 5.7020 -6.6341 2.9490 27 6 2.2459 -3.6640 -0.0012 28 1 -0.4850 0.8400 0.0004 29 1 1.0039 -2.5490 -2.1402 30 1 -0.3190 -1.7407 -1.2661 31 1 -1.0592 -3.9406 -2.1157 32 1 -1.0290 -3.9378 -0.3353 33 1 0.0059 -6.0061 -1.1402 34 1 1.1068 -5.0829 -2.1931 35 1 2.7199 -7.7564 2.3335 36 1 4.2898 -6.7700 0.7338 37 1 4.1747 -5.0161 0.4527 38 1 5.1226 -3.4396 2.0337 39 1 6.8102 -3.0484 3.7835 40 1 7.7958 -4.9542 4.9916 41 1 7.0861 -7.2507 4.4570 42 1 5.3910 -7.6413 2.7143 43 1 2.8058 -3.6668 0.9340 44 1 2.9330 -3.5572 -0.8405 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:59 Heat of formation + Delta-G solvation = -74.345511 kcal Electronic energy + Delta-G solvation = -25347.868548 eV Core-core repulsion = 21843.262584 eV Total energy + Delta-G solvation = -3504.605964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.26475 -39.07789 -37.27477 -36.13272 -33.55378 -32.95018 -31.66200 -30.85514 -30.23527 -28.69896 -25.42223 -25.08430 -23.71252 -22.53972 -21.66519 -21.13282 -20.10794 -18.73678 -17.35767 -16.82494 -16.48048 -16.24982 -15.46851 -15.16889 -15.06779 -14.83024 -14.49040 -13.94591 -13.84498 -13.37466 -13.34659 -13.03711 -12.89072 -12.76212 -12.51843 -12.24828 -11.99301 -11.88403 -11.60686 -11.12236 -11.06255 -11.01366 -10.90765 -10.86190 -10.66892 -10.32179 -10.03262 -9.83532 -9.67210 -9.19214 -8.94268 -8.88127 -8.61595 -8.48074 -8.02035 -6.11062 -4.20091 1.35074 1.44094 2.84923 3.22779 3.30539 3.31413 3.38945 3.81429 4.32619 4.34958 4.63257 4.81772 4.90235 5.02653 5.08088 5.13463 5.18088 5.18869 5.51835 5.53521 5.60161 5.68337 5.71754 5.74506 5.84174 5.97383 6.04291 6.08628 6.12772 6.24019 6.42930 6.47388 6.48573 6.54109 6.64504 6.70630 6.86818 7.02837 7.08725 7.24735 7.57177 7.59022 7.80324 7.83671 7.98022 8.24659 8.46410 8.83270 9.45947 10.94164 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.005151 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.993970 B = 5434.565341 C = 7508.060681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.031 0.969 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.597 5.597 15 C 0.484 3.516 16 O -0.555 6.555 17 C 0.100 3.900 18 H 0.127 0.873 19 O -0.534 6.534 20 C -0.112 4.112 21 C -0.073 4.073 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.105 4.105 27 C 0.107 3.893 28 H 0.262 0.738 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.376 0.624 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 -10.157 2.536 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.049 0.951 11 C -0.150 4.150 12 C -0.173 4.173 13 C -0.010 4.010 14 N -0.330 5.330 15 C 0.272 3.728 16 O -0.435 6.435 17 C 0.038 3.962 18 H 0.144 0.856 19 O -0.338 6.338 20 C -0.150 4.150 21 C -0.073 4.073 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.123 4.123 27 C -0.015 4.015 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.090 0.910 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.724 -10.077 2.932 14.308 hybrid contribution 0.482 0.711 -0.460 0.975 sum 10.207 -9.366 2.472 14.071 Atomic orbital electron populations 1.69870 1.05945 1.26657 1.49859 1.24930 0.94818 0.99116 0.94768 0.86601 0.79877 0.83423 0.78145 1.20654 1.21219 1.19833 1.21017 0.92859 0.90154 1.51740 0.92409 1.18994 0.92883 0.90945 0.95213 0.95092 1.21632 0.99463 0.95574 0.98362 1.21998 0.97758 0.96442 1.01062 1.21597 0.91478 0.99763 0.88122 1.48345 1.41993 1.15816 1.26825 1.21432 0.85096 0.83314 0.82996 1.90640 1.48095 1.31056 1.73689 1.21820 0.91365 0.92713 0.90345 0.85584 1.86619 1.94733 1.16620 1.35837 1.21349 0.92314 1.04335 0.97023 1.19635 0.96833 0.93497 0.97380 1.21209 0.97361 0.96600 0.97921 1.21151 0.97147 0.99009 0.96326 1.21125 1.00372 0.92920 1.00028 1.21087 0.98048 0.96915 0.98104 1.20975 0.96561 0.98483 0.96259 1.22288 0.95491 0.82953 1.00752 0.92829 0.94533 0.88616 0.92487 0.92419 0.90289 0.92134 0.77569 0.90267 0.88594 0.85375 0.86038 0.86444 0.86394 0.86365 0.91038 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 2 C 0.07 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.52 -12.85 8.56 -34.44 -0.29 -13.14 16 8 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.04 0.87 2.25 -91.65 -0.21 0.67 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.44 4.96 -26.69 -0.13 -2.57 16 12 C -0.13 -2.50 6.08 -26.61 -0.16 -2.66 16 13 C 0.11 1.94 6.44 -3.71 -0.02 1.91 16 14 N -0.60 -10.50 2.97 -172.77 -0.51 -11.01 16 15 C 0.48 8.46 7.06 -10.99 -0.08 8.38 16 16 O -0.56 -11.10 15.73 -14.25 -0.22 -11.33 16 17 C 0.10 1.47 2.53 -27.88 -0.07 1.40 16 18 H 0.13 1.97 7.09 -51.93 -0.37 1.60 16 19 O -0.53 -7.82 12.48 -55.04 -0.69 -8.50 16 20 C -0.11 -1.38 4.66 -27.88 -0.13 -1.51 16 21 C -0.07 -0.91 4.96 -104.62 -0.52 -1.43 16 22 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 23 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 24 C -0.13 -1.35 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.10 -1.19 9.39 -39.58 -0.37 -1.56 16 27 C 0.11 1.93 4.16 -3.71 -0.02 1.91 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.10 2.38 6.05 -51.93 -0.31 2.06 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.38 4.45 8.77 45.56 0.40 4.85 16 36 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.10 1.19 5.98 -51.93 -0.31 0.88 16 38 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.07 1.19 5.07 -51.93 -0.26 0.93 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -29.22 352.79 -10.01 -39.23 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.83 Total: 8.61 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.67 Total: -14.01 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.11 Total: -34.27 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.91 Total: -19.83 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.22 -10.01 -39.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.117 kcal (2) G-P(sol) polarization free energy of solvation -29.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds