Wall clock time and date at job start Tue Mar 31 2020 08:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86800 * 119.99489 * 2 1 4 4 H 1.48500 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47304 * 299.99653 * 3 2 1 6 6 H 1.48505 * 109.47384 * 60.00098 * 3 2 1 7 7 C 1.40274 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00033 * 188.98600 * 7 2 1 9 9 C 1.40888 * 119.99929 * 8.98430 * 7 2 1 10 10 C 1.40703 * 120.32658 * 35.81693 * 9 7 2 11 11 C 1.37598 * 119.88019 * 180.25531 * 10 9 7 12 12 C 1.38826 * 120.56918 * 359.73733 * 11 10 9 13 13 C 1.38215 * 120.67860 * 359.97438 * 12 11 10 14 14 C 1.39228 * 120.08970 * 0.02562 * 13 12 11 15 15 C 1.47427 * 120.28100 * 179.97438 * 14 13 12 16 16 O 1.21615 * 120.00107 * 175.35321 * 15 14 13 17 17 N 1.34783 * 120.00224 * 355.35695 * 15 14 13 18 18 C 1.46498 * 119.99922 * 179.72520 * 17 15 14 19 19 C 1.53001 * 109.46678 * 180.27408 * 18 17 15 20 20 C 1.53008 * 109.46833 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47145 * 179.97438 * 20 19 18 22 22 C 1.42892 * 114.00277 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47490 * 180.02562 * 22 21 20 24 24 C 1.52994 * 117.50179 * 243.62309 * 23 22 21 25 25 C 1.52996 * 60.00408 * 252.50894 * 24 23 22 26 26 H 0.96997 * 120.00452 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.06391 * 359.97438 * 10 9 7 28 28 H 1.08011 * 119.71561 * 179.76536 * 11 10 9 29 29 H 1.08003 * 119.66118 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.95476 * 180.02562 * 13 12 11 31 31 H 0.96993 * 119.99803 * 359.97438 * 17 15 14 32 32 H 1.08997 * 109.47180 * 300.26726 * 18 17 15 33 33 H 1.08998 * 109.47423 * 60.27542 * 18 17 15 34 34 H 1.08997 * 109.47190 * 299.99261 * 19 18 17 35 35 H 1.08997 * 109.47507 * 60.00258 * 19 18 17 36 36 H 1.09003 * 109.46932 * 300.00105 * 20 19 18 37 37 H 1.08997 * 109.46711 * 59.99957 * 20 19 18 38 38 H 1.09004 * 109.47281 * 300.00022 * 22 21 20 39 39 H 1.08997 * 109.47133 * 60.00101 * 22 21 20 40 40 H 1.09002 * 115.54999 * 29.33059 * 23 22 21 41 41 H 1.09001 * 117.49748 * 359.97438 * 24 23 22 42 42 H 1.09001 * 117.50099 * 145.02133 * 24 23 22 43 43 H 1.08995 * 117.50400 * 252.51502 * 25 24 23 44 44 H 1.08998 * 117.49732 * 107.48239 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3466 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8814 2.3966 1.2125 7 6 2.0078 -1.2148 0.0005 8 1 3.0778 -1.2203 0.1466 9 6 1.3164 -2.4275 -0.1895 10 6 0.2162 -2.4885 -1.0644 11 6 -0.4557 -3.6766 -1.2391 12 6 -0.0544 -4.8206 -0.5628 13 6 1.0267 -4.7885 0.2977 14 6 1.7266 -3.6013 0.4952 15 6 2.8802 -3.5622 1.4124 16 8 3.5395 -2.5456 1.5173 17 7 3.2041 -4.6529 2.1348 18 6 4.3540 -4.6159 3.0418 19 6 4.5050 -5.9742 3.7295 20 6 5.7063 -5.9358 4.6763 21 8 5.8470 -7.2042 5.3191 22 6 6.9462 -7.2758 6.2293 23 6 7.0004 -8.6711 6.8549 24 6 6.7872 -8.7764 8.3662 25 6 8.1819 -8.9879 7.7739 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1033 -1.6034 -1.5945 28 1 -1.3022 -3.7195 -1.9085 29 1 -0.5922 -5.7455 -0.7111 30 1 1.3290 -5.6856 0.8175 31 1 2.6781 -5.4636 2.0515 32 1 5.2575 -4.3937 2.4741 33 1 4.1984 -3.8429 3.7944 34 1 3.6015 -6.1964 4.2973 35 1 4.6606 -6.7472 2.9770 36 1 6.6097 -5.7137 4.1082 37 1 5.5511 -5.1627 5.4289 38 1 7.8753 -7.0823 5.6930 39 1 6.8175 -6.5303 7.0139 40 1 6.6145 -9.4798 6.2343 41 1 6.6088 -7.8517 8.9150 42 1 6.2608 -9.6546 8.7403 43 1 8.5731 -10.0051 7.7581 44 1 8.9206 -8.2023 7.9328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600963421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:58 Heat of formation + Delta-G solvation = -49.505896 kcal Electronic energy + Delta-G solvation = -23247.790358 eV Core-core repulsion = 19744.261520 eV Total energy + Delta-G solvation = -3503.528838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.02354 -38.68528 -37.10861 -36.71176 -34.76159 -33.65683 -31.67176 -29.91225 -29.42513 -27.46725 -25.62151 -24.67782 -22.77051 -22.22154 -21.68588 -20.90192 -20.71340 -19.29543 -17.55291 -17.09190 -16.49359 -16.18067 -15.89449 -15.26266 -15.01346 -14.90073 -14.60099 -14.21308 -13.79699 -13.55382 -13.43485 -13.08028 -12.69923 -12.50279 -12.12743 -11.93070 -11.83135 -11.64805 -11.57920 -11.23134 -11.16495 -11.11938 -10.93569 -10.79701 -10.62378 -10.51001 -10.48726 -10.08179 -9.73229 -9.65308 -9.26462 -8.38716 -8.34790 -7.57846 -7.32414 -6.78532 -4.38016 2.36651 2.81208 3.11618 3.12445 3.21141 3.23176 3.49520 3.99608 4.04454 4.18366 4.44209 4.50728 4.68039 4.70568 4.86249 4.94758 4.99433 5.13703 5.21012 5.24240 5.29551 5.40451 5.49513 5.52228 5.63881 5.70861 5.74153 5.82610 5.99677 6.03365 6.15283 6.25814 6.31258 6.63159 6.95713 6.98020 7.09582 7.16943 7.25748 7.47247 7.63030 7.89298 8.00480 8.19378 8.39584 8.69710 8.84769 8.92264 9.42962 10.17673 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002431 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.500852 B =11516.649257 C =12718.086477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.068 3.932 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.422 4.422 8 H 0.111 0.889 9 C 0.147 3.853 10 C -0.146 4.146 11 C -0.096 4.096 12 C -0.244 4.244 13 C -0.057 4.057 14 C -0.261 4.261 15 C 0.565 3.435 16 O -0.540 6.540 17 N -0.749 5.749 18 C 0.129 3.871 19 C -0.129 4.129 20 C 0.067 3.933 21 O -0.386 6.386 22 C 0.093 3.907 23 C -0.153 4.153 24 C -0.178 4.178 25 C -0.175 4.175 26 H 0.281 0.719 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.136 -12.312 10.633 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.450 4.450 8 H 0.129 0.871 9 C 0.142 3.858 10 C -0.166 4.166 11 C -0.115 4.115 12 C -0.264 4.264 13 C -0.076 4.076 14 C -0.266 4.266 15 C 0.359 3.641 16 O -0.418 6.418 17 N -0.404 5.404 18 C 0.004 3.996 19 C -0.167 4.167 20 C -0.010 4.010 21 O -0.306 6.306 22 C 0.016 3.984 23 C -0.171 4.171 24 C -0.215 4.215 25 C -0.212 4.212 26 H 0.092 0.908 27 H 0.133 0.867 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.227 0.773 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.308 -11.538 10.693 18.808 hybrid contribution 0.034 0.456 0.164 0.485 sum 10.342 -11.083 10.857 18.646 Atomic orbital electron populations 1.69725 1.07765 1.29467 1.35024 1.26154 0.94789 1.01818 0.92239 0.86120 0.81346 0.80223 0.78282 1.17998 1.19897 1.19972 1.20338 0.97719 0.89338 1.37627 0.87144 1.17498 0.89878 0.91370 0.87009 1.21336 0.98672 0.96256 1.00289 1.20805 0.98231 0.93661 0.98793 1.20292 1.02122 0.97539 1.06412 1.20659 0.94958 0.95254 0.96766 1.19465 1.03021 0.96518 1.07572 1.18409 0.84429 0.81788 0.79464 1.90650 1.53281 1.30801 1.67114 1.45960 1.32322 1.16208 1.45908 1.20943 0.90125 0.95604 0.92901 1.21680 0.98269 0.98090 0.98627 1.22375 0.98251 0.85246 0.95128 1.87849 1.49922 1.33791 1.59004 1.21979 0.89446 0.95038 0.91893 1.22153 1.03637 0.98348 0.93008 1.23077 0.99323 1.03584 0.95501 1.22978 0.91570 1.02968 1.03722 0.90814 0.86664 0.89065 0.89066 0.89191 0.77284 0.92080 0.92038 0.90518 0.90557 0.92919 0.92940 0.92889 0.93179 0.86804 0.88640 0.88576 0.88391 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.75 11.25 55.56 0.63 -20.13 16 2 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 3 Si 0.92 19.78 29.57 -169.99 -5.03 14.76 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.42 -11.68 7.78 -37.81 -0.29 -11.98 16 8 H 0.11 3.18 5.73 -52.49 -0.30 2.88 16 9 C 0.15 3.96 5.48 -106.55 -0.58 3.38 16 10 C -0.15 -3.73 8.62 -38.88 -0.34 -4.07 16 11 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 12 C -0.24 -5.21 10.03 -39.37 -0.39 -5.60 16 13 C -0.06 -1.23 9.52 -39.22 -0.37 -1.60 16 14 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 15 C 0.56 13.17 7.72 -12.52 -0.10 13.07 16 16 O -0.54 -14.26 13.53 5.26 0.07 -14.19 16 17 N -0.75 -13.34 5.51 -61.38 -0.34 -13.67 16 18 C 0.13 1.91 5.67 -4.04 -0.02 1.89 16 19 C -0.13 -1.49 5.70 -26.73 -0.15 -1.64 16 20 C 0.07 0.71 5.94 37.16 0.22 0.93 16 21 O -0.39 -4.39 10.34 -35.23 -0.36 -4.75 16 22 C 0.09 0.83 6.22 37.16 0.23 1.06 16 23 C -0.15 -1.24 6.06 -90.62 -0.55 -1.79 16 24 C -0.18 -1.23 10.18 -26.74 -0.27 -1.50 16 25 C -0.18 -1.11 10.25 -26.73 -0.27 -1.38 16 26 H 0.28 6.65 8.29 -40.82 -0.34 6.31 16 27 H 0.12 3.00 6.72 -52.48 -0.35 2.64 16 28 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.09 1.58 6.42 -52.49 -0.34 1.25 16 31 H 0.39 6.06 6.53 -40.82 -0.27 5.79 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.41 7.88 -51.93 -0.41 0.00 16 40 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.10 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -30.53 367.14 -10.22 -40.74 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.71 Total: 8.87 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -4.00 Total: -17.17 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.29 Total: -33.80 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.29 Total: -18.94 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.53 -10.22 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600963421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.763 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds