Wall clock time and date at job start Tue Mar 31 2020 08:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86800 * 119.99489 * 2 1 4 4 H 1.48500 * 109.47151 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47304 * 299.99653 * 3 2 1 6 6 H 1.48505 * 109.47384 * 60.00098 * 3 2 1 7 7 C 1.40274 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00033 * 188.98600 * 7 2 1 9 9 C 1.40888 * 119.99929 * 8.98430 * 7 2 1 10 10 C 1.40703 * 120.32658 * 35.81693 * 9 7 2 11 11 C 1.37598 * 119.88019 * 180.25531 * 10 9 7 12 12 C 1.38826 * 120.56918 * 359.73733 * 11 10 9 13 13 C 1.38215 * 120.67860 * 359.97438 * 12 11 10 14 14 C 1.39228 * 120.08970 * 0.02562 * 13 12 11 15 15 C 1.47427 * 120.28100 * 179.97438 * 14 13 12 16 16 O 1.21615 * 120.00107 * 175.35321 * 15 14 13 17 17 N 1.34783 * 120.00224 * 355.35695 * 15 14 13 18 18 C 1.46498 * 119.99922 * 179.72520 * 17 15 14 19 19 C 1.53001 * 109.46678 * 180.27408 * 18 17 15 20 20 C 1.53008 * 109.46833 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47145 * 179.97438 * 20 19 18 22 22 C 1.42892 * 114.00277 * 179.97438 * 21 20 19 23 23 C 1.53001 * 109.47490 * 180.02562 * 22 21 20 24 24 C 1.52994 * 117.50179 * 243.62309 * 23 22 21 25 25 C 1.52996 * 60.00408 * 252.50894 * 24 23 22 26 26 H 0.96997 * 120.00452 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.06391 * 359.97438 * 10 9 7 28 28 H 1.08011 * 119.71561 * 179.76536 * 11 10 9 29 29 H 1.08003 * 119.66118 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.95476 * 180.02562 * 13 12 11 31 31 H 0.96993 * 119.99803 * 359.97438 * 17 15 14 32 32 H 1.08997 * 109.47180 * 300.26726 * 18 17 15 33 33 H 1.08998 * 109.47423 * 60.27542 * 18 17 15 34 34 H 1.08997 * 109.47190 * 299.99261 * 19 18 17 35 35 H 1.08997 * 109.47507 * 60.00258 * 19 18 17 36 36 H 1.09003 * 109.46932 * 300.00105 * 20 19 18 37 37 H 1.08997 * 109.46711 * 59.99957 * 20 19 18 38 38 H 1.09004 * 109.47281 * 300.00022 * 22 21 20 39 39 H 1.08997 * 109.47133 * 60.00101 * 22 21 20 40 40 H 1.09002 * 115.54999 * 29.33059 * 23 22 21 41 41 H 1.09001 * 117.49748 * 359.97438 * 24 23 22 42 42 H 1.09001 * 117.50099 * 145.02133 * 24 23 22 43 43 H 1.08995 * 117.50400 * 252.51502 * 25 24 23 44 44 H 1.08998 * 117.49732 * 107.48239 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.7002 1.3466 0.0006 5 1 1.8815 2.3965 -1.2125 6 1 1.8814 2.3966 1.2125 7 6 2.0078 -1.2148 0.0005 8 1 3.0778 -1.2203 0.1466 9 6 1.3164 -2.4275 -0.1895 10 6 0.2162 -2.4885 -1.0644 11 6 -0.4557 -3.6766 -1.2391 12 6 -0.0544 -4.8206 -0.5628 13 6 1.0267 -4.7885 0.2977 14 6 1.7266 -3.6013 0.4952 15 6 2.8802 -3.5622 1.4124 16 8 3.5395 -2.5456 1.5173 17 7 3.2041 -4.6529 2.1348 18 6 4.3540 -4.6159 3.0418 19 6 4.5050 -5.9742 3.7295 20 6 5.7063 -5.9358 4.6763 21 8 5.8470 -7.2042 5.3191 22 6 6.9462 -7.2758 6.2293 23 6 7.0004 -8.6711 6.8549 24 6 6.7872 -8.7764 8.3662 25 6 8.1819 -8.9879 7.7739 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1033 -1.6034 -1.5945 28 1 -1.3022 -3.7195 -1.9085 29 1 -0.5922 -5.7455 -0.7111 30 1 1.3290 -5.6856 0.8175 31 1 2.6781 -5.4636 2.0515 32 1 5.2575 -4.3937 2.4741 33 1 4.1984 -3.8429 3.7944 34 1 3.6015 -6.1964 4.2973 35 1 4.6606 -6.7472 2.9770 36 1 6.6097 -5.7137 4.1082 37 1 5.5511 -5.1627 5.4289 38 1 7.8753 -7.0823 5.6930 39 1 6.8175 -6.5303 7.0139 40 1 6.6145 -9.4798 6.2343 41 1 6.6088 -7.8517 8.9150 42 1 6.2608 -9.6546 8.7403 43 1 8.5731 -10.0051 7.7581 44 1 8.9206 -8.2023 7.9328 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600963421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:57 Heat of formation + Delta-G solvation = -67.011355 kcal Electronic energy + Delta-G solvation = -23248.549452 eV Core-core repulsion = 19744.261520 eV Total energy + Delta-G solvation = -3504.287932 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71614 -39.48691 -38.63428 -37.64751 -36.22891 -35.48434 -33.03186 -31.74246 -31.11594 -28.32589 -27.33088 -25.95425 -23.79607 -23.25944 -22.93725 -22.48360 -21.54372 -20.97118 -19.38009 -18.09002 -17.74270 -17.35571 -17.12786 -16.82243 -16.26156 -16.07159 -15.94632 -15.40602 -15.34641 -14.98988 -14.82676 -14.49401 -14.22608 -13.84965 -13.63445 -13.36604 -12.93316 -12.86369 -12.84495 -12.46084 -12.41156 -12.40048 -12.30168 -12.14071 -11.95979 -11.89516 -11.46883 -11.34154 -11.14645 -11.13662 -10.45752 -10.23580 -9.96305 -9.38670 -9.20602 -8.67172 -6.36505 0.52036 1.01497 1.33583 1.47514 1.49974 2.21662 2.23362 2.35867 2.70539 2.80224 2.97561 3.72151 3.83524 3.94455 3.96768 4.00509 4.07540 4.26953 4.32601 4.37324 4.41505 4.48306 4.51074 4.55139 4.59945 4.68296 4.70909 4.77130 4.90354 5.00730 5.09012 5.10723 5.15115 5.23019 5.24366 5.25719 5.34869 5.62782 5.66401 5.82946 6.06498 6.12130 6.23305 6.35966 6.66551 6.81171 6.93157 7.02439 7.67068 8.31280 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.002431 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.500852 B =11516.649257 C =12718.086477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.029 3.971 3 Si 0.979 3.021 4 H -0.269 1.269 5 H -0.255 1.255 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.087 0.913 9 C 0.114 3.886 10 C -0.176 4.176 11 C -0.093 4.093 12 C -0.235 4.235 13 C -0.054 4.054 14 C -0.280 4.280 15 C 0.559 3.441 16 O -0.580 6.580 17 N -0.729 5.729 18 C 0.129 3.871 19 C -0.114 4.114 20 C 0.067 3.933 21 O -0.403 6.403 22 C 0.089 3.911 23 C -0.171 4.171 24 C -0.180 4.180 25 C -0.164 4.164 26 H 0.289 0.711 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.407 0.593 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.108 0.892 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.210 -14.496 11.469 21.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.179 1.179 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.195 4.195 11 C -0.111 4.111 12 C -0.254 4.254 13 C -0.073 4.073 14 C -0.285 4.285 15 C 0.352 3.648 16 O -0.462 6.462 17 N -0.384 5.384 18 C 0.005 3.995 19 C -0.152 4.152 20 C -0.010 4.010 21 O -0.323 6.323 22 C 0.013 3.987 23 C -0.189 4.189 24 C -0.217 4.217 25 C -0.201 4.201 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.152 0.848 31 H 0.244 0.756 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.123 0.877 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.370 -13.782 11.542 20.753 hybrid contribution -0.006 0.880 -0.058 0.882 sum 10.364 -12.901 11.484 20.143 Atomic orbital electron populations 1.69747 1.08620 1.30543 1.36230 1.26835 0.95630 1.04409 0.91629 0.85204 0.79100 0.76504 0.79143 1.19334 1.17909 1.19146 1.20271 0.96882 0.91071 1.40962 0.89558 1.17891 0.90904 0.92310 0.87831 1.21274 0.99791 0.97137 1.01292 1.21194 0.98274 0.93003 0.98642 1.20821 1.01520 0.98486 1.04561 1.21093 0.94213 0.95526 0.96466 1.19864 1.03814 0.97145 1.07703 1.18440 0.84035 0.82459 0.79840 1.90630 1.54501 1.32685 1.68373 1.45730 1.32758 1.15123 1.44746 1.21062 0.88655 0.97602 0.92192 1.21512 0.99099 0.95822 0.98778 1.22336 0.98047 0.85357 0.95211 1.87811 1.50997 1.33939 1.59568 1.22130 0.89036 0.95771 0.91788 1.22155 1.05530 0.97685 0.93538 1.23161 0.99982 1.03981 0.94603 1.23073 0.91264 1.03836 1.01893 0.90081 0.88444 0.86179 0.84850 0.84823 0.75582 0.92465 0.92899 0.90081 0.89761 0.92125 0.92429 0.92148 0.92583 0.87663 0.88409 0.88061 0.87386 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.68 11.25 21.88 0.25 -44.43 16 2 C 0.03 1.59 5.25 85.37 0.45 2.04 16 3 Si 0.98 42.22 29.57 68.60 2.03 44.25 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.46 -27.05 7.78 23.41 0.18 -26.87 16 8 H 0.09 5.33 5.73 -2.91 -0.02 5.31 16 9 C 0.11 6.39 5.48 -21.11 -0.12 6.27 16 10 C -0.18 -9.15 8.62 22.72 0.20 -8.95 16 11 C -0.09 -4.03 10.01 22.26 0.22 -3.81 16 12 C -0.23 -9.17 10.03 22.41 0.22 -8.95 16 13 C -0.05 -2.18 9.52 22.50 0.21 -1.97 16 14 C -0.28 -13.81 5.92 -19.70 -0.12 -13.93 16 15 C 0.56 26.31 7.72 86.66 0.67 26.98 16 16 O -0.58 -31.87 13.53 -4.08 -0.06 -31.93 16 17 N -0.73 -25.04 5.51 -466.36 -2.57 -27.60 16 18 C 0.13 3.70 5.67 86.38 0.49 4.19 16 19 C -0.11 -2.40 5.70 30.60 0.17 -2.23 16 20 C 0.07 1.30 5.94 71.98 0.43 1.73 16 21 O -0.40 -8.51 10.34 -148.98 -1.54 -10.05 16 22 C 0.09 1.45 6.22 71.98 0.45 1.90 16 23 C -0.17 -2.53 6.06 -10.79 -0.07 -2.60 16 24 C -0.18 -2.22 10.18 30.59 0.31 -1.90 16 25 C -0.16 -1.75 10.25 30.59 0.31 -1.44 16 26 H 0.29 14.06 8.29 -92.71 -0.77 13.30 16 27 H 0.10 5.30 6.72 -2.91 -0.02 5.28 16 28 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 29 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.13 4.09 6.42 -2.91 -0.02 4.07 16 31 H 0.41 11.41 6.53 -92.71 -0.60 10.81 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.06 0.83 7.88 -2.39 -0.02 0.81 16 40 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.10 1.14 8.03 -2.39 -0.02 1.12 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -69.38 367.14 2.53 -66.85 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.39 Total: 32.44 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 4.02 Total: -29.53 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -2.32 Total: -72.03 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.60 Total: -41.98 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -69.38 2.53 -66.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600963421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.161 kcal (2) G-P(sol) polarization free energy of solvation -69.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds