Wall clock time and date at job start Tue Mar 31 2020 08:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86798 * 120.00637 * 2 1 4 4 H 1.48507 * 109.46975 * 269.99974 * 3 2 1 5 5 H 1.48504 * 109.47116 * 29.99660 * 3 2 1 6 6 H 1.48493 * 109.47296 * 150.00075 * 3 2 1 7 7 C 1.40275 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00203 * 170.76846 * 7 2 1 9 9 C 1.40886 * 120.00347 * 350.77016 * 7 2 1 10 10 C 1.40710 * 120.32259 * 325.83218 * 9 7 2 11 11 C 1.37604 * 119.87873 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57148 * 0.02562 * 11 10 9 13 13 C 1.38221 * 120.67558 * 359.68911 * 12 11 10 14 14 C 1.39228 * 120.08977 * 0.56810 * 13 12 11 15 15 C 1.47434 * 120.27922 * 179.73983 * 14 13 12 16 16 O 1.21613 * 119.99733 * 174.15926 * 15 14 13 17 17 N 1.34769 * 120.00231 * 354.16723 * 15 14 13 18 18 C 1.46506 * 120.00149 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.46759 * 34.99289 * 18 17 15 20 20 C 1.52995 * 109.47083 * 154.99687 * 18 17 15 21 21 C 1.53011 * 109.46772 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.46948 * 299.99704 * 21 20 18 23 23 H 1.09001 * 109.47505 * 300.00240 * 22 21 20 24 24 C 1.53004 * 109.47148 * 179.97438 * 22 21 20 25 25 O 1.42902 * 109.46812 * 65.00278 * 24 22 21 26 26 C 1.53003 * 109.47134 * 60.00308 * 22 21 20 27 27 C 1.52997 * 109.46956 * 299.99653 * 26 22 21 28 28 H 0.97007 * 119.99482 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.06120 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.71334 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.66495 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.95613 * 180.28295 * 13 12 11 33 33 H 0.96999 * 120.00179 * 359.97438 * 17 15 14 34 34 H 1.09000 * 109.47647 * 60.00146 * 20 18 17 35 35 H 1.08994 * 109.47520 * 299.99594 * 20 18 17 36 36 H 1.09000 * 109.46827 * 180.02562 * 21 20 18 37 37 H 1.09000 * 109.46834 * 59.99747 * 21 20 18 38 38 H 1.08993 * 109.47184 * 185.00204 * 24 22 21 39 39 H 1.08995 * 109.46900 * 305.00722 * 24 22 21 40 40 H 0.96701 * 114.00205 * 180.02562 * 25 24 22 41 41 H 1.09001 * 109.46980 * 59.99610 * 26 22 21 42 42 H 1.09000 * 109.47154 * 179.97438 * 26 22 21 43 43 H 1.09008 * 109.47083 * 179.97438 * 27 26 22 44 44 H 1.09001 * 109.47241 * 299.99797 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4880 2.0463 -1.4002 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4399 0.7000 7 6 2.0075 -1.2149 0.0005 8 1 3.0771 -1.2211 -0.1495 9 6 1.3167 -2.4270 0.1968 10 6 0.1985 -2.4774 1.0494 11 6 -0.4691 -3.6662 1.2349 12 6 -0.0490 -4.8204 0.5877 13 6 1.0429 -4.7961 -0.2595 14 6 1.7421 -3.6095 -0.4631 15 6 2.9109 -3.5802 -1.3614 16 8 3.4532 -2.5226 -1.6192 17 7 3.3781 -4.7252 -1.8969 18 6 4.5392 -4.6960 -2.7900 19 1 5.2331 -3.9235 -2.4585 20 6 5.2387 -6.0563 -2.7617 21 6 6.4509 -6.0259 -3.6949 22 6 5.9891 -5.7195 -5.1209 23 1 5.2950 -6.4920 -5.4520 24 6 7.2013 -5.6884 -6.0540 25 8 7.7867 -6.9905 -6.1178 26 6 5.2894 -4.3591 -5.1492 27 6 4.0773 -4.3895 -4.2161 28 1 -0.4850 0.8402 -0.0004 29 1 -0.1347 -1.5848 1.5579 30 1 -1.3268 -3.7020 1.8902 31 1 -0.5836 -5.7456 0.7442 32 1 1.3569 -5.6998 -0.7605 33 1 2.9458 -5.5688 -1.6911 34 1 4.5448 -6.8288 -3.0931 35 1 5.5674 -6.2748 -1.7457 36 1 6.9491 -6.9952 -3.6751 37 1 7.1450 -5.2533 -3.3638 38 1 6.8844 -5.3833 -7.0512 39 1 7.9351 -4.9784 -5.6727 40 1 8.5624 -7.0452 -6.6925 41 1 5.9836 -3.5866 -4.8182 42 1 4.9608 -4.1406 -6.1653 43 1 3.5791 -3.4202 -4.2359 44 1 3.3832 -5.1620 -4.5471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601333380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:30 Heat of formation + Delta-G solvation = -92.566832 kcal Electronic energy + Delta-G solvation = -24687.061110 eV Core-core repulsion = 21181.665010 eV Total energy + Delta-G solvation = -3505.396100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.58162 -38.38109 -36.95405 -36.18007 -33.92476 -33.35819 -30.79194 -30.58231 -29.78764 -28.98212 -25.66253 -24.91256 -22.69760 -22.32515 -21.18424 -20.57301 -19.96381 -19.15590 -17.54550 -17.45333 -16.38264 -15.67142 -15.27967 -15.17961 -14.79093 -14.27089 -14.21813 -14.01571 -13.74868 -13.28964 -13.15523 -13.01871 -12.68472 -12.34586 -12.24020 -12.07635 -11.88286 -11.57095 -11.15175 -11.11550 -11.07162 -10.95758 -10.69908 -10.65175 -10.49221 -10.40193 -10.21988 -10.03925 -9.99785 -9.64517 -9.24276 -8.40763 -8.24419 -7.55978 -7.32643 -6.77552 -4.35973 2.39370 2.83393 3.10977 3.18451 3.25168 3.91743 3.99311 4.04637 4.20057 4.59767 4.70967 4.76202 4.90030 5.11110 5.17579 5.34122 5.37701 5.46915 5.51989 5.57806 5.62594 5.68324 5.82258 5.93698 6.01637 6.07447 6.11435 6.15594 6.23441 6.26753 6.31517 6.46868 6.54502 6.68963 6.98227 7.13083 7.21130 7.30090 7.37901 7.49064 7.65221 7.91575 8.01282 8.20511 8.44705 8.69383 8.85152 8.92786 9.46828 10.17950 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.003709 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.044633 B = 7546.696572 C = 8845.232813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.069 3.931 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.105 0.895 9 C 0.146 3.854 10 C -0.149 4.149 11 C -0.096 4.096 12 C -0.247 4.247 13 C -0.057 4.057 14 C -0.261 4.261 15 C 0.565 3.435 16 O -0.538 6.538 17 N -0.745 5.745 18 C 0.151 3.849 19 H 0.082 0.918 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.088 4.088 23 H 0.077 0.923 24 C 0.079 3.921 25 O -0.574 6.574 26 C -0.109 4.109 27 C -0.128 4.128 28 H 0.281 0.719 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.390 0.610 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.376 0.624 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.852 -9.122 -8.450 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.444 4.444 8 H 0.123 0.877 9 C 0.142 3.858 10 C -0.168 4.168 11 C -0.115 4.115 12 C -0.266 4.266 13 C -0.076 4.076 14 C -0.266 4.266 15 C 0.359 3.641 16 O -0.417 6.417 17 N -0.399 5.399 18 C 0.045 3.955 19 H 0.101 0.899 20 C -0.164 4.164 21 C -0.142 4.142 22 C -0.106 4.106 23 H 0.095 0.905 24 C 0.001 3.999 25 O -0.379 6.379 26 C -0.147 4.147 27 C -0.167 4.167 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.224 0.776 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.222 0.778 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.553 -8.295 -8.216 15.086 hybrid contribution 0.310 0.418 -0.463 0.696 sum 9.863 -7.878 -8.679 15.319 Atomic orbital electron populations 1.69722 1.07753 1.29506 1.34956 1.26117 0.94781 1.01746 0.92236 0.86159 0.80436 0.79869 0.79375 1.19354 1.20345 1.18330 1.20161 0.97378 0.89446 1.37438 0.87733 1.17483 0.89956 0.91344 0.87059 1.21354 0.98594 0.96332 1.00505 1.20800 0.98226 0.93589 0.98867 1.20280 1.02033 0.97327 1.06969 1.20650 0.95143 0.95182 0.96611 1.19481 1.02645 0.96172 1.08336 1.18417 0.83719 0.82584 0.79362 1.90664 1.59624 1.29634 1.61767 1.46102 1.32978 1.10152 1.50640 1.20746 0.88216 0.97247 0.89267 0.89949 1.21812 0.97489 0.97017 1.00073 1.21450 0.97170 1.02150 0.93471 1.21199 0.95786 0.98457 0.95207 0.90504 1.22276 0.95050 0.84100 0.98441 1.86487 1.48543 1.31322 1.71523 1.21480 0.97543 0.95988 0.99730 1.21916 0.97210 1.02753 0.94773 0.90771 0.86518 0.89131 0.89163 0.89281 0.77554 0.91726 0.91383 0.91143 0.91969 0.93788 0.93610 0.77756 0.91571 0.91883 0.90869 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.76 11.14 55.56 0.62 -20.14 16 2 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 3 Si 0.92 19.81 29.57 -169.99 -5.03 14.79 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 7 C -0.42 -11.50 7.68 -37.82 -0.29 -11.79 16 8 H 0.10 2.99 5.92 -52.48 -0.31 2.68 16 9 C 0.15 3.94 5.51 -106.54 -0.59 3.35 16 10 C -0.15 -3.81 8.62 -38.88 -0.34 -4.14 16 11 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 12 C -0.25 -5.29 10.03 -39.37 -0.39 -5.69 16 13 C -0.06 -1.22 9.52 -39.22 -0.37 -1.60 16 14 C -0.26 -6.41 5.92 -104.37 -0.62 -7.03 16 15 C 0.57 13.06 7.68 -12.52 -0.10 12.96 16 16 O -0.54 -14.08 13.25 5.27 0.07 -14.01 16 17 N -0.75 -13.23 5.03 -54.88 -0.28 -13.50 16 18 C 0.15 2.29 2.46 -67.93 -0.17 2.12 16 19 H 0.08 1.43 7.58 -51.93 -0.39 1.03 16 20 C -0.13 -1.51 5.39 -26.73 -0.14 -1.65 16 21 C -0.10 -1.13 5.10 -26.73 -0.14 -1.27 16 22 C -0.09 -0.91 2.43 -90.62 -0.22 -1.13 16 23 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 24 C 0.08 0.69 6.43 37.16 0.24 0.93 16 25 O -0.57 -5.18 13.19 -35.23 -0.46 -5.65 16 26 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 27 C -0.13 -1.82 5.49 -26.73 -0.15 -1.97 16 28 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 29 H 0.12 3.05 6.60 -52.49 -0.35 2.70 16 30 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.58 6.44 -52.49 -0.34 1.24 16 33 H 0.39 6.07 6.67 -40.82 -0.27 5.80 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.38 1.68 9.12 45.56 0.42 2.09 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 352.19 15.07 5.31 5.31 Total: -1.00 -30.84 352.19 -9.53 -40.37 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.86 Total: 11.99 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -3.90 Total: -19.15 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.34 Total: -33.65 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.40 Total: -19.65 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.84 -9.53 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601333380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.196 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds