Wall clock time and date at job start Tue Mar 31 2020 08:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30625 * 1 3 3 Si 1.86798 * 120.00637 * 2 1 4 4 H 1.48507 * 109.46975 * 269.99974 * 3 2 1 5 5 H 1.48504 * 109.47116 * 29.99660 * 3 2 1 6 6 H 1.48493 * 109.47296 * 150.00075 * 3 2 1 7 7 C 1.40275 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00203 * 170.76846 * 7 2 1 9 9 C 1.40886 * 120.00347 * 350.77016 * 7 2 1 10 10 C 1.40710 * 120.32259 * 325.83218 * 9 7 2 11 11 C 1.37604 * 119.87873 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57148 * 0.02562 * 11 10 9 13 13 C 1.38221 * 120.67558 * 359.68911 * 12 11 10 14 14 C 1.39228 * 120.08977 * 0.56810 * 13 12 11 15 15 C 1.47434 * 120.27922 * 179.73983 * 14 13 12 16 16 O 1.21613 * 119.99733 * 174.15926 * 15 14 13 17 17 N 1.34769 * 120.00231 * 354.16723 * 15 14 13 18 18 C 1.46506 * 120.00149 * 179.97438 * 17 15 14 19 19 H 1.09000 * 109.46759 * 34.99289 * 18 17 15 20 20 C 1.52995 * 109.47083 * 154.99687 * 18 17 15 21 21 C 1.53011 * 109.46772 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.46948 * 299.99704 * 21 20 18 23 23 H 1.09001 * 109.47505 * 300.00240 * 22 21 20 24 24 C 1.53004 * 109.47148 * 179.97438 * 22 21 20 25 25 O 1.42902 * 109.46812 * 65.00278 * 24 22 21 26 26 C 1.53003 * 109.47134 * 60.00308 * 22 21 20 27 27 C 1.52997 * 109.46956 * 299.99653 * 26 22 21 28 28 H 0.97007 * 119.99482 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.06120 * 359.97438 * 10 9 7 30 30 H 1.08003 * 119.71334 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.66495 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.95613 * 180.28295 * 13 12 11 33 33 H 0.96999 * 120.00179 * 359.97438 * 17 15 14 34 34 H 1.09000 * 109.47647 * 60.00146 * 20 18 17 35 35 H 1.08994 * 109.47520 * 299.99594 * 20 18 17 36 36 H 1.09000 * 109.46827 * 180.02562 * 21 20 18 37 37 H 1.09000 * 109.46834 * 59.99747 * 21 20 18 38 38 H 1.08993 * 109.47184 * 185.00204 * 24 22 21 39 39 H 1.08995 * 109.46900 * 305.00722 * 24 22 21 40 40 H 0.96701 * 114.00205 * 180.02562 * 25 24 22 41 41 H 1.09001 * 109.46980 * 59.99610 * 26 22 21 42 42 H 1.09000 * 109.47154 * 179.97438 * 26 22 21 43 43 H 1.09008 * 109.47083 * 179.97438 * 27 26 22 44 44 H 1.09001 * 109.47241 * 299.99797 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4880 2.0463 -1.4002 5 1 1.4379 2.6527 0.7000 6 1 3.5379 1.4399 0.7000 7 6 2.0075 -1.2149 0.0005 8 1 3.0771 -1.2211 -0.1495 9 6 1.3167 -2.4270 0.1968 10 6 0.1985 -2.4774 1.0494 11 6 -0.4691 -3.6662 1.2349 12 6 -0.0490 -4.8204 0.5877 13 6 1.0429 -4.7961 -0.2595 14 6 1.7421 -3.6095 -0.4631 15 6 2.9109 -3.5802 -1.3614 16 8 3.4532 -2.5226 -1.6192 17 7 3.3781 -4.7252 -1.8969 18 6 4.5392 -4.6960 -2.7900 19 1 5.2331 -3.9235 -2.4585 20 6 5.2387 -6.0563 -2.7617 21 6 6.4509 -6.0259 -3.6949 22 6 5.9891 -5.7195 -5.1209 23 1 5.2950 -6.4920 -5.4520 24 6 7.2013 -5.6884 -6.0540 25 8 7.7867 -6.9905 -6.1178 26 6 5.2894 -4.3591 -5.1492 27 6 4.0773 -4.3895 -4.2161 28 1 -0.4850 0.8402 -0.0004 29 1 -0.1347 -1.5848 1.5579 30 1 -1.3268 -3.7020 1.8902 31 1 -0.5836 -5.7456 0.7442 32 1 1.3569 -5.6998 -0.7605 33 1 2.9458 -5.5688 -1.6911 34 1 4.5448 -6.8288 -3.0931 35 1 5.5674 -6.2748 -1.7457 36 1 6.9491 -6.9952 -3.6751 37 1 7.1450 -5.2533 -3.3638 38 1 6.8844 -5.3833 -7.0512 39 1 7.9351 -4.9784 -5.6727 40 1 8.5624 -7.0452 -6.6925 41 1 5.9836 -3.5866 -4.8182 42 1 4.9608 -4.1406 -6.1653 43 1 3.5791 -3.4202 -4.2359 44 1 3.3832 -5.1620 -4.5471 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601333380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:29 Heat of formation + Delta-G solvation = -112.979420 kcal Electronic energy + Delta-G solvation = -24687.946266 eV Core-core repulsion = 21181.665010 eV Total energy + Delta-G solvation = -3506.281256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01830 -39.72335 -38.46844 -37.26761 -35.69083 -34.88207 -32.14774 -31.76195 -31.59382 -30.46922 -27.38240 -26.10535 -23.97773 -23.68790 -22.81889 -21.91767 -21.22708 -20.61430 -19.36351 -18.18538 -17.98216 -17.19808 -17.00116 -16.21934 -15.93930 -15.81878 -15.61715 -15.37920 -15.06673 -14.84575 -14.56725 -14.49433 -14.18790 -13.76733 -13.47144 -13.31548 -13.10524 -12.97046 -12.86352 -12.79572 -12.48979 -12.31777 -12.17645 -12.08500 -11.87502 -11.53612 -11.47599 -11.34618 -11.19477 -11.14083 -10.76478 -10.22055 -9.85990 -9.37925 -9.21524 -8.67217 -6.35450 0.53661 1.01786 1.32350 1.45749 1.49240 2.20521 2.38106 2.49195 2.79850 3.34545 3.70402 3.74067 3.76434 4.03028 4.15168 4.29025 4.34374 4.36811 4.43013 4.47614 4.54248 4.58740 4.59875 4.67605 4.76636 4.86801 4.90405 5.02084 5.09995 5.13903 5.17814 5.18888 5.25584 5.27536 5.35118 5.43611 5.51006 5.62978 5.77893 5.84041 6.07098 6.11572 6.35338 6.66265 6.82388 6.93921 6.95981 7.03726 7.71618 8.30492 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017027 B = 0.003709 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.044633 B = 7546.696572 C = 8845.232813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.031 3.969 3 Si 0.979 3.021 4 H -0.271 1.271 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.114 3.886 10 C -0.178 4.178 11 C -0.093 4.093 12 C -0.237 4.237 13 C -0.054 4.054 14 C -0.280 4.280 15 C 0.560 3.440 16 O -0.579 6.579 17 N -0.726 5.726 18 C 0.148 3.852 19 H 0.055 0.945 20 C -0.116 4.116 21 C -0.100 4.100 22 C -0.085 4.085 23 H 0.077 0.923 24 C 0.081 3.919 25 O -0.590 6.590 26 C -0.103 4.103 27 C -0.123 4.123 28 H 0.289 0.711 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.404 0.596 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.396 0.604 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.034 0.966 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.133 -11.741 -9.389 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.196 1.196 5 H -0.180 1.180 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.110 3.890 10 C -0.198 4.198 11 C -0.111 4.111 12 C -0.256 4.256 13 C -0.073 4.073 14 C -0.285 4.285 15 C 0.353 3.647 16 O -0.460 6.460 17 N -0.379 5.379 18 C 0.043 3.957 19 H 0.073 0.927 20 C -0.153 4.153 21 C -0.138 4.138 22 C -0.103 4.103 23 H 0.095 0.905 24 C 0.004 3.996 25 O -0.399 6.399 26 C -0.141 4.141 27 C -0.162 4.162 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.245 0.755 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.841 -10.974 -9.168 17.359 hybrid contribution 0.205 0.991 -0.195 1.031 sum 10.046 -9.983 -9.363 16.978 Atomic orbital electron populations 1.69747 1.08619 1.30558 1.36152 1.26791 0.95615 1.04321 0.91616 0.85263 0.79167 0.76416 0.79150 1.19621 1.18007 1.18760 1.20113 0.96564 0.91194 1.40728 0.90123 1.17873 0.90961 0.92283 0.87872 1.21297 0.99641 0.97197 1.01619 1.21185 0.98354 0.92969 0.98637 1.20804 1.01425 0.98283 1.05101 1.21074 0.94460 0.95487 0.96246 1.19879 1.03492 0.96779 1.08356 1.18440 0.83498 0.83345 0.79430 1.90642 1.60755 1.31526 1.63086 1.45893 1.33098 1.09111 1.49749 1.20929 0.86919 0.98753 0.89077 0.92678 1.21750 0.97949 0.94829 1.00817 1.21423 0.96466 1.02450 0.93486 1.21137 0.96546 0.97300 0.95336 0.90473 1.22193 0.94481 0.84305 0.98633 1.86422 1.49770 1.31258 1.72406 1.21412 0.96199 0.96875 0.99592 1.21838 0.98581 1.00921 0.94883 0.90069 0.88265 0.86254 0.84959 0.84988 0.75892 0.90087 0.91134 0.90353 0.92306 0.92523 0.93076 0.75477 0.92126 0.90434 0.94677 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.95 11.14 21.88 0.24 -44.71 16 2 C 0.03 1.69 5.25 85.37 0.45 2.14 16 3 Si 0.98 42.52 29.57 68.60 2.03 44.55 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.46 -26.86 7.68 23.41 0.18 -26.69 16 8 H 0.08 4.99 5.92 -2.91 -0.02 4.97 16 9 C 0.11 6.40 5.51 -21.11 -0.12 6.28 16 10 C -0.18 -9.36 8.62 22.72 0.20 -9.17 16 11 C -0.09 -4.09 10.01 22.26 0.22 -3.87 16 12 C -0.24 -9.37 10.03 22.41 0.22 -9.15 16 13 C -0.05 -2.19 9.52 22.50 0.21 -1.98 16 14 C -0.28 -13.91 5.92 -19.70 -0.12 -14.02 16 15 C 0.56 26.56 7.68 86.67 0.67 27.22 16 16 O -0.58 -32.05 13.25 -4.07 -0.05 -32.10 16 17 N -0.73 -25.34 5.03 -445.79 -2.24 -27.58 16 18 C 0.15 4.45 2.46 44.99 0.11 4.56 16 19 H 0.05 1.98 7.58 -2.39 -0.02 1.96 16 20 C -0.12 -2.52 5.39 30.60 0.16 -2.36 16 21 C -0.10 -1.96 5.10 30.60 0.16 -1.80 16 22 C -0.08 -1.56 2.43 -10.79 -0.03 -1.59 16 23 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 24 C 0.08 1.21 6.43 71.98 0.46 1.68 16 25 O -0.59 -8.97 13.19 -148.98 -1.97 -10.94 16 26 C -0.10 -2.21 5.20 30.59 0.16 -2.05 16 27 C -0.12 -3.48 5.49 30.59 0.17 -3.32 16 28 H 0.29 14.20 8.29 -92.70 -0.77 13.43 16 29 H 0.10 5.45 6.60 -2.91 -0.02 5.43 16 30 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 31 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 32 H 0.13 4.12 6.44 -2.91 -0.02 4.10 16 33 H 0.40 11.61 6.67 -92.71 -0.62 10.99 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.47 7.82 -2.39 -0.02 1.45 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.40 2.41 9.12 -74.06 -0.68 1.74 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -71.32 352.19 0.85 -70.47 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.27 Total: 34.42 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 3.11 Total: -34.11 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -2.00 Total: -72.29 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -2.02 Total: -43.04 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -71.32 0.85 -70.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601333380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.508 kcal (2) G-P(sol) polarization free energy of solvation -71.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds