Wall clock time and date at job start Tue Mar 31 2020 08:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48504 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47354 * 299.99697 * 3 2 1 6 6 H 1.48493 * 109.47147 * 60.00041 * 3 2 1 7 7 C 1.40273 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99954 * 157.82938 * 7 2 1 9 9 C 1.40891 * 120.00316 * 337.82769 * 7 2 1 10 10 C 1.40711 * 120.32607 * 324.08253 * 9 7 2 11 11 C 1.37587 * 119.88158 * 180.02562 * 10 9 7 12 12 C 1.38834 * 120.57357 * 0.02562 * 11 10 9 13 13 C 1.38218 * 120.67201 * 359.97438 * 12 11 10 14 14 C 1.39236 * 120.09352 * 359.71038 * 13 12 11 15 15 C 1.47430 * 120.28381 * 180.29866 * 14 13 12 16 16 O 1.21607 * 120.00058 * 174.18732 * 15 14 13 17 17 N 1.34773 * 120.00003 * 354.19236 * 15 14 13 18 18 C 1.46501 * 120.00079 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47390 * 179.97438 * 18 17 15 20 20 C 1.52996 * 109.47382 * 179.97438 * 19 18 17 21 21 H 1.09008 * 109.48006 * 55.00191 * 20 19 18 22 22 C 1.53098 * 109.48386 * 175.02583 * 20 19 18 23 23 C 1.53178 * 109.16446 * 177.58353 * 22 20 19 24 24 C 1.53176 * 109.04264 * 303.03776 * 23 22 20 25 25 C 1.53091 * 109.16622 * 56.97594 * 24 23 22 26 26 O 1.42898 * 109.41332 * 302.39070 * 25 24 23 27 27 H 0.96999 * 120.00262 * 174.29177 * 1 2 3 28 28 H 1.08001 * 120.05479 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.71689 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.66580 * 179.97438 * 12 11 10 31 31 H 1.07996 * 119.95513 * 179.97438 * 13 12 11 32 32 H 0.97003 * 120.00695 * 359.97438 * 17 15 14 33 33 H 1.09003 * 109.47441 * 300.00345 * 18 17 15 34 34 H 1.09011 * 109.47124 * 60.00127 * 18 17 15 35 35 H 1.08999 * 109.47679 * 300.00336 * 19 18 17 36 36 H 1.09002 * 109.47228 * 60.00358 * 19 18 17 37 37 H 1.09000 * 109.51937 * 297.49719 * 22 20 19 38 38 H 1.08993 * 109.51762 * 57.68831 * 22 20 19 39 39 H 1.08994 * 109.54619 * 183.16392 * 23 22 20 40 40 H 1.09006 * 109.60605 * 62.94416 * 23 22 20 41 41 H 1.08992 * 109.52273 * 297.06704 * 24 23 22 42 42 H 1.09009 * 109.57167 * 176.91439 * 24 23 22 43 43 H 1.09001 * 109.48010 * 182.40533 * 25 24 23 44 44 H 1.08997 * 109.48073 * 62.37307 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.7003 1.3463 0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8816 2.3964 1.2124 7 6 2.0076 -1.2149 0.0005 8 1 3.0277 -1.2497 -0.3524 9 6 1.3812 -2.3897 0.4615 10 6 0.4779 -2.3373 1.5391 11 6 -0.1282 -3.4903 1.9822 12 6 0.1436 -4.7090 1.3754 13 6 1.0270 -4.7873 0.3152 14 6 1.6510 -3.6369 -0.1600 15 6 2.5890 -3.7147 -1.2948 16 8 3.0496 -2.6962 -1.7738 17 7 2.9359 -4.9144 -1.8014 18 6 3.8674 -4.9916 -2.9294 19 6 4.0914 -6.4574 -3.3065 20 6 5.0638 -6.5380 -4.4850 21 1 5.9831 -6.0084 -4.2346 22 6 5.3847 -8.0051 -4.7828 23 6 6.3104 -8.0801 -6.0009 24 6 5.6360 -7.3803 -7.1849 25 6 5.3057 -5.9374 -6.7942 26 8 4.4674 -5.9387 -5.6370 27 1 -0.4850 -0.8358 -0.0836 28 1 0.2614 -1.3938 2.0181 29 1 -0.8214 -3.4469 2.8092 30 1 -0.3401 -5.6050 1.7353 31 1 1.2302 -5.7415 -0.1480 32 1 2.5688 -5.7269 -1.4192 33 1 3.4504 -4.4562 -3.7824 34 1 4.8186 -4.5402 -2.6468 35 1 4.5086 -6.9925 -2.4535 36 1 3.1405 -6.9093 -3.5891 37 1 5.8799 -8.4518 -3.9207 38 1 4.4612 -8.5443 -4.9935 39 1 6.4977 -9.1238 -6.2528 40 1 7.2544 -7.5846 -5.7740 41 1 4.7176 -7.9067 -7.4443 42 1 6.3103 -7.3805 -8.0415 43 1 4.7872 -5.4473 -7.6183 44 1 6.2282 -5.4001 -6.5742 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601420005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:51 Heat of formation + Delta-G solvation = -90.384756 kcal Electronic energy + Delta-G solvation = -24241.884784 eV Core-core repulsion = 20736.583306 eV Total energy + Delta-G solvation = -3505.301478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.70534 -38.88935 -36.98263 -34.91205 -33.89033 -33.83839 -32.42878 -30.18391 -29.45272 -28.55637 -25.48570 -24.86231 -23.70195 -22.19100 -21.48827 -20.84196 -20.46471 -19.35962 -17.99250 -16.66861 -16.42642 -16.23133 -15.23054 -14.88432 -14.70714 -14.65763 -14.58021 -14.10010 -13.92750 -13.79107 -13.50995 -13.05478 -12.91780 -12.60325 -12.39120 -12.11466 -11.85230 -11.75311 -11.44467 -11.30414 -11.14152 -11.05811 -10.94919 -10.84451 -10.71914 -10.47565 -10.35144 -10.11589 -9.63709 -9.57024 -8.98138 -8.47814 -8.30864 -7.74851 -7.57789 -7.11485 -4.40699 2.28463 2.76325 3.22222 3.33096 3.44277 3.59454 3.92576 4.07678 4.12730 4.51518 4.51840 4.57885 4.66719 4.68182 4.94203 5.09728 5.15046 5.20725 5.31844 5.43634 5.48814 5.49409 5.53067 5.66365 5.70083 5.73733 5.86034 5.89460 5.97567 6.03756 6.16385 6.21392 6.33263 6.56856 6.74396 7.02309 7.10081 7.18758 7.31715 7.52510 7.64837 7.75196 7.92428 8.13757 8.25963 8.43898 8.77372 8.89351 9.42450 10.07669 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017527 B = 0.003209 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.180449 B = 8722.186677 C =10011.824177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.033 3.967 3 Si 1.074 2.926 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.468 4.468 8 H 0.102 0.898 9 C 0.121 3.879 10 C -0.199 4.199 11 C -0.077 4.077 12 C -0.260 4.260 13 C -0.044 4.044 14 C -0.263 4.263 15 C 0.562 3.438 16 O -0.536 6.536 17 N -0.750 5.750 18 C 0.128 3.872 19 C -0.123 4.123 20 C 0.094 3.906 21 H 0.061 0.939 22 C -0.150 4.150 23 C -0.123 4.123 24 C -0.157 4.157 25 C 0.060 3.940 26 O -0.374 6.374 27 H 0.298 0.702 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.390 0.610 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -13.716 -8.959 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.120 0.880 9 C 0.117 3.883 10 C -0.218 4.218 11 C -0.096 4.096 12 C -0.279 4.279 13 C -0.063 4.063 14 C -0.268 4.268 15 C 0.356 3.644 16 O -0.414 6.414 17 N -0.405 5.405 18 C 0.004 3.996 19 C -0.160 4.160 20 C 0.036 3.964 21 H 0.079 0.921 22 C -0.188 4.188 23 C -0.160 4.160 24 C -0.195 4.195 25 C -0.017 4.017 26 O -0.293 6.293 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.224 0.776 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.332 -11.228 -9.264 17.291 hybrid contribution 0.133 -2.480 0.062 2.484 sum 9.465 -13.708 -9.202 19.030 Atomic orbital electron populations 1.70324 1.08271 1.34228 1.28724 1.27224 0.95647 1.04595 0.91386 0.83516 0.75742 0.73104 0.77857 1.19919 1.20296 1.20137 1.21091 1.02570 0.92306 1.33528 0.87985 1.17504 0.89342 0.92003 0.89476 1.21228 1.03974 0.97077 0.99511 1.20738 0.97648 0.93235 0.97935 1.20240 1.07516 0.96614 1.03542 1.20723 0.95080 0.95434 0.95087 1.19449 1.09869 0.95347 1.02141 1.18368 0.81030 0.82109 0.82915 1.90689 1.55072 1.34033 1.61608 1.46019 1.49520 1.09048 1.35913 1.21071 0.93647 0.95040 0.89834 1.21817 1.00270 0.97576 0.96373 1.22026 0.95997 0.92406 0.85972 0.92132 1.22211 1.00566 0.97373 0.98618 1.21585 0.98521 1.00894 0.95030 1.22201 1.01466 0.97412 0.98387 1.22553 0.95113 0.95490 0.88540 1.88001 1.41991 1.80143 1.19130 0.88920 0.87717 0.88914 0.88926 0.89116 0.77608 0.91384 0.92537 0.90091 0.90534 0.90807 0.90933 0.91566 0.91827 0.91086 0.91052 0.88883 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.61 12.68 55.56 0.70 -20.91 16 2 C 0.03 0.88 4.97 -17.30 -0.09 0.79 16 3 Si 1.07 23.03 29.99 -169.99 -5.10 17.94 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.47 -13.11 7.52 -37.81 -0.28 -13.39 16 8 H 0.10 3.00 6.13 -52.49 -0.32 2.68 16 9 C 0.12 3.28 5.08 -106.54 -0.54 2.74 16 10 C -0.20 -5.01 8.04 -38.89 -0.31 -5.33 16 11 C -0.08 -1.72 10.01 -39.60 -0.40 -2.11 16 12 C -0.26 -5.50 10.03 -39.37 -0.39 -5.90 16 13 C -0.04 -0.95 9.52 -39.22 -0.37 -1.32 16 14 C -0.26 -6.53 5.92 -104.37 -0.62 -7.15 16 15 C 0.56 13.47 7.72 -12.52 -0.10 13.37 16 16 O -0.54 -14.71 13.64 5.27 0.07 -14.64 16 17 N -0.75 -13.76 5.50 -61.38 -0.34 -14.09 16 18 C 0.13 2.05 5.57 -4.04 -0.02 2.03 16 19 C -0.12 -1.41 5.04 -26.73 -0.13 -1.54 16 20 C 0.09 1.00 2.64 -26.68 -0.07 0.93 16 21 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 22 C -0.15 -1.25 5.42 -26.59 -0.14 -1.40 16 23 C -0.12 -0.91 6.03 -26.55 -0.16 -1.07 16 24 C -0.16 -1.19 6.14 -26.59 -0.16 -1.36 16 25 C 0.06 0.56 6.84 37.20 0.25 0.82 16 26 O -0.37 -4.65 9.94 -35.23 -0.35 -5.00 16 27 H 0.30 8.33 6.90 -40.82 -0.28 8.05 16 28 H 0.10 2.68 7.18 -52.49 -0.38 2.31 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 1.60 6.44 -52.49 -0.34 1.26 16 32 H 0.39 6.08 6.54 -40.82 -0.27 5.81 16 33 H 0.07 1.23 7.82 -51.93 -0.41 0.83 16 34 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -31.29 354.38 -9.92 -41.21 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.71 Total: 10.04 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -3.54 Total: -19.88 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.37 Total: -35.00 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.28 Total: -19.63 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.10 Total: 17.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.29 -9.92 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601420005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.177 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds