Wall clock time and date at job start Tue Mar 31 2020 08:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86803 * 119.99712 * 2 1 4 4 H 1.48507 * 109.46787 * 269.25470 * 3 2 1 5 5 H 1.48494 * 109.47252 * 29.25789 * 3 2 1 6 6 H 1.48497 * 109.46860 * 149.26014 * 3 2 1 7 7 C 1.40272 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99900 * 354.42284 * 7 2 1 9 9 C 1.40889 * 119.99836 * 174.41145 * 7 2 1 10 10 C 1.40701 * 120.33106 * 321.32321 * 9 7 2 11 11 C 1.37593 * 119.88380 * 179.97438 * 10 9 7 12 12 C 1.38823 * 120.57101 * 359.97438 * 11 10 9 13 13 C 1.38217 * 120.67653 * 0.02562 * 12 11 10 14 14 C 1.39228 * 120.09275 * 359.97438 * 13 12 11 15 15 C 1.47427 * 120.28687 * 180.02562 * 14 13 12 16 16 O 1.21609 * 120.00427 * 175.07514 * 15 14 13 17 17 N 1.34776 * 119.99837 * 355.07526 * 15 14 13 18 18 C 1.46497 * 120.00353 * 180.02562 * 17 15 14 19 19 C 1.53004 * 109.47056 * 274.99723 * 18 17 15 20 20 C 1.53001 * 109.47270 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.46906 * 59.99687 * 20 19 18 22 22 C 1.53001 * 109.46906 * 179.97438 * 21 20 19 23 23 O 1.42906 * 109.47317 * 295.00027 * 22 21 20 24 24 C 1.52994 * 109.47743 * 300.00013 * 21 20 19 25 25 C 1.53001 * 109.46930 * 60.00001 * 24 21 20 26 26 H 0.96997 * 119.99997 * 359.97438 * 1 2 3 27 27 H 1.08008 * 120.05729 * 0.25409 * 10 9 7 28 28 H 1.08007 * 119.71872 * 179.97438 * 11 10 9 29 29 H 1.08009 * 119.66389 * 179.97438 * 12 11 10 30 30 H 1.08002 * 119.95964 * 180.02562 * 13 12 11 31 31 H 0.97005 * 120.00039 * 359.97438 * 17 15 14 32 32 H 1.08999 * 109.47175 * 34.99421 * 18 17 15 33 33 H 1.08999 * 109.46881 * 299.99878 * 19 18 17 34 34 H 1.08998 * 109.46719 * 60.00061 * 19 18 17 35 35 H 1.09003 * 109.47053 * 300.00337 * 20 19 18 36 36 H 1.08999 * 109.46988 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47182 * 60.00737 * 21 20 19 38 38 H 1.08998 * 109.47257 * 55.00472 * 22 21 20 39 39 H 1.09002 * 109.47154 * 175.00490 * 22 21 20 40 40 H 0.96702 * 114.00076 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47367 * 300.00054 * 24 21 20 42 42 H 1.08995 * 109.47613 * 180.02562 * 24 21 20 43 43 H 1.08999 * 109.46988 * 180.02562 * 25 24 21 44 44 H 1.08999 * 109.47309 * 60.00287 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5035 2.0373 -1.4000 5 1 1.4300 2.6572 0.6842 6 1 3.5299 1.4448 0.7156 7 6 2.0077 -1.2148 0.0005 8 1 1.4716 -2.1478 0.0919 9 6 3.4116 -1.2177 -0.1183 10 6 4.0536 -0.3095 -0.9801 11 6 5.4252 -0.3200 -1.0886 12 6 6.1847 -1.2201 -0.3537 13 6 5.5784 -2.1224 0.4998 14 6 4.1924 -2.1362 0.6312 15 6 3.5413 -3.0964 1.5408 16 8 2.3395 -3.0454 1.7200 17 7 4.2779 -4.0308 2.1738 18 6 3.6309 -4.9854 3.0773 19 6 3.4959 -4.3609 4.4675 20 6 2.8196 -5.3576 5.4110 21 6 3.6667 -6.6283 5.5027 22 6 2.9907 -7.6248 6.4467 23 8 2.9700 -7.0878 7.7708 24 6 3.8016 -7.2529 4.1126 25 6 4.4780 -6.2562 3.1692 26 1 -0.4850 0.8400 0.0004 27 1 3.4710 0.3977 -1.5520 28 1 5.9152 0.3781 -1.7513 29 1 7.2605 -1.2158 -0.4506 30 1 6.1806 -2.8173 1.0664 31 1 5.2364 -4.0718 2.0306 32 1 2.6417 -5.2355 2.6938 33 1 4.4851 -4.1108 4.8510 34 1 2.8920 -3.4558 4.4021 35 1 1.8304 -5.6073 5.0272 36 1 2.7231 -4.9124 6.4012 37 1 4.6559 -6.3786 5.8865 38 1 1.9694 -7.8066 6.1123 39 1 3.5464 -8.5625 6.4436 40 1 2.5545 -7.6674 8.4239 41 1 2.8124 -7.5027 3.7289 42 1 4.4048 -8.1584 4.1781 43 1 4.5737 -6.7010 2.1787 44 1 5.4672 -6.0065 3.5528 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601422270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:51 Heat of formation + Delta-G solvation = -88.065101 kcal Electronic energy + Delta-G solvation = -24772.343536 eV Core-core repulsion = 21267.142646 eV Total energy + Delta-G solvation = -3505.200890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.63047 -38.49317 -37.10730 -36.24934 -33.91040 -33.34128 -30.84552 -30.72593 -30.43785 -29.24950 -25.66183 -24.86621 -22.74038 -22.42708 -21.45153 -20.57484 -19.97059 -19.28514 -17.61007 -17.45698 -16.68296 -15.78464 -15.38993 -15.21753 -14.80895 -14.31964 -14.16851 -14.07123 -13.75158 -13.51054 -13.47340 -13.02768 -12.64807 -12.58385 -12.27100 -12.13250 -11.96916 -11.90494 -11.51886 -11.13977 -11.12045 -10.91469 -10.72345 -10.61719 -10.44047 -10.35046 -10.28849 -10.07620 -9.94416 -9.76809 -9.24599 -8.48633 -8.31026 -7.80937 -7.56564 -6.84979 -4.44178 2.11888 2.60624 3.10581 3.19677 3.30533 3.86658 3.98214 4.02148 4.04179 4.60772 4.63121 4.77982 4.89411 4.99618 5.19408 5.28510 5.37950 5.42085 5.49334 5.54151 5.56291 5.60757 5.76533 5.79502 5.92328 5.93699 6.02260 6.07144 6.12200 6.21575 6.34864 6.36884 6.49653 6.54719 6.59101 6.80864 7.11491 7.19727 7.26384 7.39663 7.40908 7.58885 7.76278 8.02087 8.37781 8.50939 8.65040 8.86006 9.39952 10.13277 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.003663 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.844245 B = 7642.618261 C = 8536.934939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.397 4.397 8 H 0.115 0.885 9 C 0.118 3.882 10 C -0.226 4.226 11 C -0.066 4.066 12 C -0.253 4.253 13 C -0.043 4.043 14 C -0.245 4.245 15 C 0.560 3.440 16 O -0.524 6.524 17 N -0.745 5.745 18 C 0.150 3.850 19 C -0.130 4.130 20 C -0.106 4.106 21 C -0.088 4.088 22 C 0.079 3.921 23 O -0.572 6.572 24 C -0.108 4.108 25 C -0.123 4.123 26 H 0.286 0.714 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.390 0.610 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.376 0.624 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -11.931 8.897 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.424 4.424 8 H 0.132 0.868 9 C 0.113 3.887 10 C -0.245 4.245 11 C -0.085 4.085 12 C -0.272 4.272 13 C -0.062 4.062 14 C -0.250 4.250 15 C 0.353 3.647 16 O -0.401 6.401 17 N -0.399 5.399 18 C 0.045 3.955 19 C -0.168 4.168 20 C -0.144 4.144 21 C -0.107 4.107 22 C 0.002 3.998 23 O -0.377 6.377 24 C -0.146 4.146 25 C -0.161 4.161 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.224 0.776 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.223 0.777 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.981 -11.295 8.720 15.886 hybrid contribution 0.548 0.291 0.161 0.640 sum 7.529 -11.005 8.881 16.020 Atomic orbital electron populations 1.69546 1.08095 1.30178 1.34431 1.26291 0.94895 1.01417 0.91454 0.86403 0.81003 0.79853 0.79340 1.19462 1.21722 1.16654 1.19937 0.90048 0.96044 1.36370 0.86768 1.17571 0.93485 0.89386 0.88267 1.21195 0.94268 1.05043 1.03998 1.20742 0.93905 0.96744 0.97118 1.20300 0.97698 1.03037 1.06153 1.20789 0.93444 0.96133 0.95842 1.19502 0.92462 1.06945 1.06099 1.18352 0.86624 0.80188 0.79534 1.90766 1.14247 1.71115 1.63928 1.46083 1.10940 1.34564 1.48292 1.20762 0.97449 0.87808 0.89479 1.21949 1.00949 0.99203 0.94749 1.21473 0.98545 0.94613 0.99786 1.21194 1.00147 0.95417 0.93927 1.22263 0.99279 0.95589 0.82694 1.86505 1.83717 1.48778 1.18738 1.21445 1.01362 0.97840 0.93943 1.21764 0.99186 0.95367 0.99813 0.90349 0.87712 0.88564 0.88531 0.88668 0.77641 0.89834 0.92262 0.91015 0.91983 0.91314 0.90532 0.93597 0.93921 0.77747 0.91437 0.91674 0.91202 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.10 13.92 55.56 0.77 -21.33 16 2 C 0.08 2.14 5.51 -17.30 -0.10 2.05 16 3 Si 0.91 21.12 24.49 -169.99 -4.16 16.96 16 4 H -0.27 -5.92 6.70 56.52 0.38 -5.54 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.80 6.68 56.52 0.38 -5.42 16 7 C -0.40 -11.24 8.08 -37.81 -0.31 -11.55 16 8 H 0.11 3.57 6.36 -52.49 -0.33 3.24 16 9 C 0.12 3.05 5.03 -106.54 -0.54 2.51 16 10 C -0.23 -5.38 6.95 -38.89 -0.27 -5.65 16 11 C -0.07 -1.39 10.01 -39.60 -0.40 -1.78 16 12 C -0.25 -4.96 10.03 -39.37 -0.39 -5.36 16 13 C -0.04 -0.86 9.52 -39.22 -0.37 -1.23 16 14 C -0.25 -5.77 5.92 -104.37 -0.62 -6.38 16 15 C 0.56 12.75 7.69 -12.52 -0.10 12.65 16 16 O -0.52 -13.97 13.33 5.27 0.07 -13.90 16 17 N -0.75 -12.83 5.03 -54.88 -0.28 -13.11 16 18 C 0.15 2.26 2.45 -67.93 -0.17 2.09 16 19 C -0.13 -1.91 5.49 -26.73 -0.15 -2.06 16 20 C -0.11 -1.34 5.10 -26.73 -0.14 -1.47 16 21 C -0.09 -0.91 2.43 -90.62 -0.22 -1.13 16 22 C 0.08 0.70 6.43 37.16 0.24 0.94 16 23 O -0.57 -5.49 13.20 -35.23 -0.46 -5.95 16 24 C -0.11 -1.02 5.21 -26.73 -0.14 -1.16 16 25 C -0.12 -1.36 5.39 -26.73 -0.14 -1.51 16 26 H 0.29 7.13 8.29 -40.82 -0.34 6.79 16 27 H 0.11 2.46 4.88 -52.48 -0.26 2.20 16 28 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 30 H 0.10 1.54 6.43 -52.49 -0.34 1.20 16 31 H 0.39 5.69 6.66 -40.82 -0.27 5.42 16 32 H 0.08 1.46 7.58 -51.93 -0.39 1.06 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.90 7.82 -51.93 -0.41 0.50 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.38 1.85 9.12 45.56 0.42 2.26 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -31.86 346.37 -8.48 -40.34 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.84 Total: 10.83 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: -3.80 Total: -19.05 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.50 Total: -34.44 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.39 Total: -19.86 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.16 Total: 16.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.86 -8.48 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601422270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.727 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds