Wall clock time and date at job start Tue Mar 31 2020 08:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30630 * 1 3 3 Si 1.86803 * 119.99680 * 2 1 4 4 H 1.48501 * 109.46687 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.47476 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47231 * 120.00119 * 3 2 1 7 7 C 1.40271 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99864 * 170.77039 * 7 2 1 9 9 C 1.40882 * 119.99939 * 350.76459 * 7 2 1 10 10 C 1.40702 * 120.33084 * 325.85269 * 9 7 2 11 11 C 1.37604 * 119.88349 * 179.97438 * 10 9 7 12 12 C 1.38821 * 120.56681 * 0.02562 * 11 10 9 13 13 C 1.38225 * 120.67968 * 359.69781 * 12 11 10 14 14 C 1.39228 * 120.08656 * 0.56102 * 13 12 11 15 15 C 1.47438 * 120.27845 * 179.74797 * 14 13 12 16 16 O 1.21610 * 120.00134 * 174.16195 * 15 14 13 17 17 N 1.34782 * 120.00077 * 354.15700 * 15 14 13 18 18 C 1.46495 * 119.99948 * 179.73001 * 17 15 14 19 19 H 1.08994 * 110.01857 * 33.87914 * 18 17 15 20 20 C 1.54270 * 110.02917 * 272.44304 * 18 17 15 21 21 C 1.54897 * 104.19379 * 217.10736 * 20 18 17 22 22 C 1.54882 * 102.74812 * 37.93869 * 21 20 18 23 23 C 1.53880 * 110.03270 * 155.27516 * 18 17 15 24 24 H 1.09000 * 110.02906 * 238.61286 * 23 18 17 25 25 C 1.52992 * 110.02903 * 359.97438 * 23 18 17 26 26 C 1.53003 * 109.46904 * 185.00136 * 25 23 18 27 27 O 1.42902 * 109.47269 * 179.97438 * 26 25 23 28 28 H 0.96998 * 120.00254 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.06044 * 359.95583 * 10 9 7 30 30 H 1.07993 * 119.71412 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.66109 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.95412 * 180.27824 * 13 12 11 33 33 H 0.97001 * 119.99666 * 0.02562 * 17 15 14 34 34 H 1.08995 * 110.48902 * 335.77900 * 20 18 17 35 35 H 1.08993 * 110.48657 * 98.42660 * 20 18 17 36 36 H 1.09002 * 110.75268 * 279.62962 * 21 20 18 37 37 H 1.08989 * 110.75694 * 156.25911 * 21 20 18 38 38 H 1.09006 * 110.48805 * 203.37651 * 22 21 20 39 39 H 1.08998 * 110.59967 * 80.79780 * 22 21 20 40 40 H 1.09003 * 109.47470 * 304.99767 * 25 23 18 41 41 H 1.09002 * 109.47509 * 65.00478 * 25 23 18 42 42 H 1.09003 * 109.46756 * 300.00068 * 26 25 23 43 43 H 1.09001 * 109.47489 * 59.99748 * 26 25 23 44 44 H 0.96700 * 113.99813 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 3.0939 1.6964 -1.2125 5 1 1.2752 2.7465 -0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0772 -1.2209 -0.1495 9 6 1.3169 -2.4269 0.1969 10 6 0.1985 -2.4773 1.0492 11 6 -0.4696 -3.6660 1.2339 12 6 -0.0498 -4.8198 0.5862 13 6 1.0424 -4.7956 -0.2606 14 6 1.7422 -3.6092 -0.4634 15 6 2.9112 -3.5798 -1.3614 16 8 3.4540 -2.5224 -1.6185 17 7 3.3782 -4.7249 -1.8974 18 6 4.5361 -4.6950 -2.7943 19 1 5.2270 -3.9105 -2.4856 20 6 4.0738 -4.4521 -4.2459 21 6 5.0239 -5.3291 -5.0989 22 6 5.1932 -6.5977 -4.2266 23 6 5.2479 -6.0592 -2.7820 24 1 6.2842 -5.9368 -2.4673 25 6 4.5238 -7.0195 -1.8364 26 6 5.3105 -8.3280 -1.7377 27 8 4.6345 -9.2248 -0.8540 28 1 -0.4850 0.8400 0.0004 29 1 -0.1348 -1.5848 1.5577 30 1 -1.3279 -3.7015 1.8883 31 1 -0.5848 -5.7450 0.7421 32 1 1.3562 -5.6993 -0.7620 33 1 2.9450 -5.5683 -1.6925 34 1 3.0401 -4.7723 -4.3757 35 1 4.1847 -3.4007 -4.5107 36 1 5.9821 -4.8306 -5.2456 37 1 4.5656 -5.5769 -6.0562 38 1 6.1210 -7.1121 -4.4773 39 1 4.3416 -7.2662 -4.3526 40 1 4.4464 -6.5667 -0.8478 41 1 3.5248 -7.2244 -2.2214 42 1 5.3879 -8.7808 -2.7262 43 1 6.3095 -8.1233 -1.3527 44 1 5.0779 -10.0771 -0.7438 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601473032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:47 Heat of formation + Delta-G solvation = -79.427819 kcal Electronic energy + Delta-G solvation = -25098.494141 eV Core-core repulsion = 21593.667792 eV Total energy + Delta-G solvation = -3504.826350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76690 -38.12915 -36.88884 -36.32648 -33.78964 -32.90114 -32.06647 -29.98089 -29.53778 -27.25604 -26.81248 -25.25933 -22.82591 -22.31217 -20.94428 -20.61846 -19.62168 -18.84690 -17.65152 -17.26809 -16.51813 -15.66869 -15.50265 -15.16636 -14.97105 -14.42797 -14.22998 -14.04127 -13.60927 -13.40892 -13.18850 -12.99828 -12.66051 -12.28702 -12.10452 -11.79355 -11.64284 -11.41438 -11.08409 -11.02300 -11.00686 -10.79109 -10.76004 -10.68022 -10.61028 -10.48257 -10.45350 -10.07198 -10.01872 -9.63176 -9.21883 -8.39031 -8.22531 -7.53663 -7.30449 -6.75416 -4.33966 2.41515 2.86533 3.11639 3.17745 3.28539 3.90741 4.01006 4.15448 4.20572 4.53110 4.60486 4.74448 4.91082 5.00701 5.08228 5.29619 5.42131 5.48257 5.58526 5.62951 5.64420 5.69273 5.75677 5.83414 5.96826 6.02916 6.04775 6.14103 6.14277 6.31236 6.33638 6.39660 6.47836 6.69957 7.00340 7.15284 7.23328 7.32491 7.46818 7.51229 7.67860 7.93801 8.03284 8.22598 8.45413 8.71156 8.87052 8.94770 9.48683 10.20080 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.014965 B = 0.004481 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.555090 B = 6246.969671 C = 7539.677349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.417 4.417 8 H 0.104 0.896 9 C 0.146 3.854 10 C -0.149 4.149 11 C -0.096 4.096 12 C -0.245 4.245 13 C -0.057 4.057 14 C -0.261 4.261 15 C 0.564 3.436 16 O -0.539 6.539 17 N -0.745 5.745 18 C 0.152 3.848 19 H 0.088 0.912 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.096 4.096 24 H 0.079 0.921 25 C -0.119 4.119 26 C 0.077 3.923 27 O -0.574 6.574 28 H 0.282 0.718 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.765 -12.554 -5.704 16.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.445 4.445 8 H 0.122 0.878 9 C 0.142 3.858 10 C -0.168 4.168 11 C -0.115 4.115 12 C -0.265 4.265 13 C -0.076 4.076 14 C -0.266 4.266 15 C 0.358 3.642 16 O -0.417 6.417 17 N -0.401 5.401 18 C 0.046 3.954 19 H 0.106 0.894 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.115 4.115 24 H 0.098 0.902 25 C -0.157 4.157 26 C 0.000 4.000 27 O -0.379 6.379 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.538 -11.091 -5.847 15.169 hybrid contribution 0.339 -0.214 -0.083 0.409 sum 8.876 -11.306 -5.931 15.549 Atomic orbital electron populations 1.69712 1.07740 1.29590 1.34938 1.26109 0.94775 1.01705 0.92236 0.86223 0.79974 0.79479 0.80244 1.18664 1.20509 1.18806 1.20124 0.97356 0.89458 1.37556 0.87790 1.17469 0.89968 0.91306 0.87040 1.21348 0.98592 0.96321 1.00512 1.20795 0.98221 0.93582 0.98856 1.20280 1.01983 0.97337 1.06877 1.20647 0.95157 0.95128 0.96645 1.19479 1.02630 0.96172 1.08353 1.18451 0.83740 0.82631 0.79398 1.90663 1.59576 1.29697 1.61773 1.46391 1.32796 1.10446 1.50514 1.21355 0.88446 0.96137 0.89483 0.89440 1.22823 0.99523 1.00334 0.94707 1.22456 0.99742 0.95898 0.98061 1.22479 1.01546 0.97648 0.94067 1.21972 0.99866 0.94482 0.95160 0.90228 1.21617 0.99470 0.93476 1.01141 1.22220 0.94913 0.90566 0.92329 1.86525 1.53742 1.29320 1.68266 0.90732 0.86526 0.89130 0.89143 0.89408 0.76846 0.91242 0.91125 0.91482 0.91653 0.91799 0.91369 0.90101 0.90963 0.93722 0.93833 0.77725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.91 11.14 55.56 0.62 -20.29 16 2 C 0.07 1.82 5.25 -17.30 -0.09 1.73 16 3 Si 0.92 19.93 29.57 -169.99 -5.03 14.90 16 4 H -0.26 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.42 -11.61 7.68 -37.82 -0.29 -11.90 16 8 H 0.10 2.99 5.91 -52.48 -0.31 2.68 16 9 C 0.15 3.99 5.51 -106.55 -0.59 3.40 16 10 C -0.15 -3.84 8.62 -38.88 -0.34 -4.17 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.60 16 12 C -0.25 -5.37 10.03 -39.37 -0.39 -5.77 16 13 C -0.06 -1.25 9.52 -39.22 -0.37 -1.63 16 14 C -0.26 -6.51 5.92 -104.36 -0.62 -7.13 16 15 C 0.56 13.18 7.71 -12.51 -0.10 13.08 16 16 O -0.54 -14.22 13.24 5.27 0.07 -14.15 16 17 N -0.75 -13.38 4.34 -53.79 -0.23 -13.61 16 18 C 0.15 2.29 3.22 -66.81 -0.22 2.08 16 19 H 0.09 1.49 7.57 -51.93 -0.39 1.10 16 20 C -0.13 -1.91 6.53 -25.07 -0.16 -2.07 16 21 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 22 C -0.12 -1.14 5.53 -25.08 -0.14 -1.28 16 23 C -0.10 -1.08 2.93 -89.50 -0.26 -1.34 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.12 -1.40 3.58 -26.73 -0.10 -1.49 16 26 C 0.08 0.75 6.90 37.16 0.26 1.00 16 27 O -0.57 -6.12 13.66 -35.23 -0.48 -6.60 16 28 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 29 H 0.12 3.07 6.59 -52.49 -0.35 2.72 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 32 H 0.09 1.64 6.44 -52.49 -0.34 1.31 16 33 H 0.39 6.41 3.96 -40.82 -0.16 6.25 16 34 H 0.07 1.04 8.05 -51.93 -0.42 0.62 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.62 8.14 -51.94 -0.42 0.20 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.65 7.76 -51.93 -0.40 0.24 16 40 H 0.08 1.12 7.42 -51.93 -0.39 0.73 16 41 H 0.07 0.88 7.10 -51.93 -0.37 0.51 16 42 H 0.04 0.36 7.51 -51.93 -0.39 -0.03 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.38 2.16 9.12 45.56 0.42 2.57 16 LS Contribution 349.84 15.07 5.27 5.27 Total: -1.00 -31.30 349.84 -9.37 -40.66 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -5.62 Total: 13.36 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.97 Total: -19.55 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.39 Total: -33.90 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.41 Total: -20.75 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.30 -9.37 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601473032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.764 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds