Wall clock time and date at job start Tue Mar 31 2020 08:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86797 * 119.99732 * 2 1 4 4 H 1.48498 * 109.47289 * 239.99507 * 3 2 1 5 5 H 1.48496 * 109.47515 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47156 * 119.99965 * 3 2 1 7 7 C 1.40270 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00026 * 188.98861 * 7 2 1 9 9 C 1.40890 * 119.99907 * 8.98091 * 7 2 1 10 10 C 1.40710 * 120.32735 * 35.84930 * 9 7 2 11 11 C 1.37599 * 119.87734 * 180.29830 * 10 9 7 12 12 C 1.38820 * 120.57322 * 359.67060 * 11 10 9 13 13 C 1.38226 * 120.67863 * 0.02562 * 12 11 10 14 14 C 1.39227 * 120.08653 * 0.02562 * 13 12 11 15 15 C 1.47434 * 120.28178 * 180.02562 * 14 13 12 16 16 O 1.21606 * 120.00346 * 175.38243 * 15 14 13 17 17 N 1.34781 * 119.99648 * 355.38046 * 15 14 13 18 18 C 1.46503 * 120.00029 * 180.02562 * 17 15 14 19 19 H 1.09004 * 110.01129 * 326.38846 * 18 17 15 20 20 C 1.54460 * 110.12516 * 87.67046 * 18 17 15 21 21 C 1.54889 * 104.10352 * 142.72740 * 20 18 17 22 22 C 1.54890 * 102.91419 * 322.30667 * 21 20 18 23 23 C 1.53874 * 110.03218 * 205.00211 * 18 17 15 24 24 H 1.08995 * 110.07238 * 121.40781 * 23 18 17 25 25 C 1.52992 * 110.03459 * 359.97438 * 23 18 17 26 26 C 1.52995 * 109.47422 * 176.38165 * 25 23 18 27 27 O 1.42902 * 109.47515 * 180.02562 * 26 25 23 28 28 H 0.97004 * 120.00490 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.06018 * 359.97436 * 10 9 7 30 30 H 1.07999 * 119.71372 * 179.70084 * 11 10 9 31 31 H 1.07999 * 119.66503 * 180.02562 * 12 11 10 32 32 H 1.07997 * 119.95880 * 179.97438 * 13 12 11 33 33 H 0.96999 * 119.99920 * 0.02562 * 17 15 14 34 34 H 1.09004 * 110.40214 * 24.14531 * 20 18 17 35 35 H 1.09002 * 110.66432 * 261.44234 * 20 18 17 36 36 H 1.08995 * 110.75898 * 203.89315 * 21 20 18 37 37 H 1.09003 * 110.75231 * 80.70795 * 21 20 18 38 38 H 1.09001 * 110.48624 * 156.52741 * 22 21 20 39 39 H 1.09001 * 110.48028 * 279.16807 * 22 21 20 40 40 H 1.09005 * 109.47234 * 296.38681 * 25 23 18 41 41 H 1.08998 * 109.47183 * 56.37968 * 25 23 18 42 42 H 1.08995 * 109.46954 * 300.00034 * 26 25 23 43 43 H 1.09007 * 109.46901 * 59.99900 * 26 25 23 44 44 H 0.96692 * 113.99964 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6964 -1.2124 5 1 1.2752 2.7465 -0.0006 6 1 3.0939 1.6965 1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0777 -1.2204 0.1467 9 6 1.3162 -2.4275 -0.1894 10 6 0.2163 -2.4887 -1.0648 11 6 -0.4562 -3.6765 -1.2387 12 6 -0.0552 -4.8205 -0.5623 13 6 1.0259 -4.7884 0.2985 14 6 1.7258 -3.6011 0.4960 15 6 2.8799 -3.5621 1.4126 16 8 3.5388 -2.5454 1.5178 17 7 3.2046 -4.6533 2.1340 18 6 4.3510 -4.6145 3.0453 19 1 5.1300 -3.9702 2.6376 20 6 3.9107 -4.0942 4.4315 21 6 4.7444 -4.9331 5.4317 22 6 4.7737 -6.3329 4.7692 23 6 4.9013 -6.0351 3.2610 24 1 5.9475 -6.0810 2.9586 25 6 4.0786 -7.0436 2.4567 26 6 4.6906 -8.4376 2.6082 27 8 3.9225 -9.3794 1.8565 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1028 -1.6037 -1.5953 30 1 -1.3030 -3.7193 -1.9076 31 1 -0.5933 -5.7451 -0.7100 32 1 1.3276 -5.6852 0.8191 33 1 2.6792 -5.4643 2.0499 34 1 2.8454 -4.2690 4.5821 35 1 4.1429 -3.0344 4.5361 36 1 4.2529 -4.9759 6.4036 37 1 5.7525 -4.5300 5.5276 38 1 5.6342 -6.9028 5.1198 39 1 3.8487 -6.8716 4.9748 40 1 3.0537 -7.0544 2.8275 41 1 4.0813 -6.7580 1.4048 42 1 5.7155 -8.4267 2.2374 43 1 4.6879 -8.7231 3.6602 44 1 4.2536 -10.2865 1.9071 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601473033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:50 Heat of formation + Delta-G solvation = -79.443132 kcal Electronic energy + Delta-G solvation = -25110.045058 eV Core-core repulsion = 21605.218044 eV Total energy + Delta-G solvation = -3504.827014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75958 -38.13087 -36.89107 -36.32654 -33.78225 -32.90054 -32.06553 -29.97918 -29.54804 -27.25023 -26.81265 -25.25219 -22.83931 -22.31510 -20.93738 -20.61007 -19.62830 -18.84956 -17.65602 -17.26884 -16.51991 -15.66247 -15.50077 -15.15445 -14.96750 -14.43055 -14.22158 -14.06126 -13.56870 -13.39781 -13.18698 -13.07460 -12.65928 -12.27754 -12.10932 -11.79057 -11.64874 -11.41564 -11.08693 -11.03492 -11.01901 -10.78850 -10.75450 -10.67023 -10.60536 -10.45646 -10.45137 -10.07802 -10.04770 -9.62869 -9.21504 -8.34401 -8.23600 -7.54384 -7.28598 -6.75437 -4.34905 2.40767 2.86436 3.11856 3.18157 3.28164 3.90612 4.01419 4.14990 4.20691 4.53398 4.60608 4.75480 4.90964 5.00557 5.08168 5.29459 5.42172 5.48153 5.58790 5.62882 5.64930 5.68570 5.75781 5.83687 5.96815 6.02846 6.05140 6.13481 6.14087 6.31296 6.33254 6.40302 6.48454 6.69550 6.99281 7.14774 7.22764 7.33227 7.46421 7.50764 7.67028 7.92906 8.04040 8.22570 8.45246 8.72660 8.87817 8.95510 9.49394 10.20809 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015082 B = 0.004538 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.091705 B = 6169.253906 C = 7597.174773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.110 0.890 9 C 0.148 3.852 10 C -0.147 4.147 11 C -0.096 4.096 12 C -0.244 4.244 13 C -0.057 4.057 14 C -0.260 4.260 15 C 0.564 3.436 16 O -0.540 6.540 17 N -0.745 5.745 18 C 0.152 3.848 19 H 0.087 0.913 20 C -0.135 4.135 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.095 4.095 24 H 0.079 0.921 25 C -0.119 4.119 26 C 0.077 3.923 27 O -0.574 6.574 28 H 0.282 0.718 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.394 0.606 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.592 -12.351 7.307 16.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.148 4.148 3 Si 0.741 3.259 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.451 4.451 8 H 0.127 0.873 9 C 0.144 3.856 10 C -0.166 4.166 11 C -0.115 4.115 12 C -0.263 4.263 13 C -0.076 4.076 14 C -0.265 4.265 15 C 0.358 3.642 16 O -0.419 6.419 17 N -0.401 5.401 18 C 0.046 3.954 19 H 0.105 0.895 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.115 4.115 24 H 0.098 0.902 25 C -0.157 4.157 26 C 0.000 4.000 27 O -0.379 6.379 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.232 0.768 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.517 -10.889 7.240 15.083 hybrid contribution 0.212 -0.212 0.226 0.376 sum 7.730 -11.101 7.466 15.451 Atomic orbital electron populations 1.69713 1.07748 1.29592 1.35053 1.26130 0.94764 1.01722 0.92232 0.86223 0.79952 0.79482 0.80264 1.18787 1.20550 1.18696 1.20255 0.97662 0.89357 1.37865 0.87258 1.17479 0.89852 0.91335 0.86969 1.21333 0.98732 0.96225 1.00339 1.20794 0.98226 0.93667 0.98801 1.20287 1.02117 0.97518 1.06385 1.20658 0.94984 0.95227 0.96766 1.19498 1.03035 0.96430 1.07557 1.18431 0.84359 0.82010 0.79363 1.90635 1.53123 1.30752 1.67363 1.46367 1.32289 1.16160 1.45305 1.21380 0.89543 0.94768 0.89721 0.89479 1.22850 1.00218 1.00063 0.94226 1.22456 1.00263 0.95177 0.98284 1.22481 1.01644 0.97409 0.94212 1.21968 0.99893 0.94278 0.95320 0.90224 1.21611 0.99881 0.92197 1.01996 1.22220 0.93899 0.89577 0.94345 1.86522 1.56939 1.20850 1.73554 0.90760 0.86712 0.89114 0.89104 0.89353 0.76839 0.91226 0.91084 0.91677 0.91519 0.91775 0.91361 0.90930 0.90181 0.93838 0.93686 0.77718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.95 11.25 55.56 0.63 -20.32 16 2 C 0.07 1.81 5.25 -17.30 -0.09 1.72 16 3 Si 0.92 19.95 29.57 -169.99 -5.03 14.93 16 4 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.42 -11.79 7.78 -37.82 -0.29 -12.08 16 8 H 0.11 3.15 5.73 -52.49 -0.30 2.85 16 9 C 0.15 4.03 5.48 -106.54 -0.58 3.44 16 10 C -0.15 -3.80 8.62 -38.88 -0.34 -4.13 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.61 16 12 C -0.24 -5.33 10.03 -39.37 -0.39 -5.72 16 13 C -0.06 -1.27 9.52 -39.22 -0.37 -1.64 16 14 C -0.26 -6.48 5.92 -104.37 -0.62 -7.10 16 15 C 0.56 13.19 7.72 -12.51 -0.10 13.10 16 16 O -0.54 -14.21 13.18 5.27 0.07 -14.14 16 17 N -0.74 -13.41 4.37 -53.69 -0.23 -13.64 16 18 C 0.15 2.30 3.22 -66.71 -0.21 2.09 16 19 H 0.09 1.48 7.56 -51.93 -0.39 1.09 16 20 C -0.13 -1.92 6.56 -24.97 -0.16 -2.09 16 21 C -0.12 -1.31 6.90 -24.74 -0.17 -1.48 16 22 C -0.12 -1.15 5.47 -25.07 -0.14 -1.28 16 23 C -0.10 -1.08 2.95 -89.50 -0.26 -1.34 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.12 -1.39 3.58 -26.74 -0.10 -1.49 16 26 C 0.08 0.74 6.89 37.16 0.26 1.00 16 27 O -0.57 -6.08 13.66 -35.23 -0.48 -6.57 16 28 H 0.28 6.77 8.29 -40.82 -0.34 6.43 16 29 H 0.11 3.02 6.72 -52.49 -0.35 2.67 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.09 1.65 6.42 -52.49 -0.34 1.32 16 33 H 0.39 6.44 3.93 -40.82 -0.16 6.27 16 34 H 0.07 1.06 8.05 -51.93 -0.42 0.64 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.65 7.78 -51.93 -0.40 0.25 16 40 H 0.07 0.89 7.06 -51.93 -0.37 0.52 16 41 H 0.08 1.09 7.51 -51.93 -0.39 0.70 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.04 0.36 7.46 -51.93 -0.39 -0.02 16 44 H 0.38 2.14 9.12 45.56 0.42 2.55 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -31.24 349.83 -9.36 -40.60 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -5.61 Total: 13.49 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.97 Total: -19.61 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.39 Total: -33.97 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.41 Total: -20.71 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.24 -9.36 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601473033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.846 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds