Wall clock time and date at job start Tue Mar 31 2020 08:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86801 * 119.99784 * 2 1 4 4 H 1.48491 * 109.47373 * 269.39934 * 3 2 1 5 5 H 1.48499 * 109.46878 * 29.40344 * 3 2 1 6 6 H 1.48506 * 109.46845 * 149.39906 * 3 2 1 7 7 C 1.40268 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99937 * 354.36621 * 7 2 1 9 9 C 1.40891 * 120.00035 * 174.36453 * 7 2 1 10 10 C 1.40707 * 120.32720 * 321.56608 * 9 7 2 11 11 C 1.37600 * 119.88018 * 180.30076 * 10 9 7 12 12 C 1.38824 * 120.56951 * 359.67417 * 11 10 9 13 13 C 1.38220 * 120.67614 * 0.02562 * 12 11 10 14 14 C 1.39225 * 120.09657 * 0.02562 * 13 12 11 15 15 C 1.47433 * 120.28886 * 180.02562 * 14 13 12 16 16 O 1.21602 * 120.00218 * 174.99616 * 15 14 13 17 17 N 1.34777 * 119.99689 * 354.98863 * 15 14 13 18 18 C 1.46499 * 120.00154 * 180.02562 * 17 15 14 19 19 H 1.09002 * 109.46635 * 34.99860 * 18 17 15 20 20 C 1.53004 * 109.46949 * 275.00335 * 18 17 15 21 21 O 1.42896 * 109.47293 * 294.99683 * 20 18 17 22 22 C 1.52996 * 109.47144 * 155.00292 * 18 17 15 23 23 C 1.53001 * 109.47273 * 295.00089 * 22 18 17 24 24 C 1.53780 * 113.61182 * 272.49794 * 23 22 18 25 25 C 1.53778 * 87.08195 * 220.01786 * 24 23 22 26 26 C 1.53776 * 113.61563 * 175.00241 * 23 22 18 27 27 H 0.96994 * 120.00105 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.06238 * 359.97438 * 10 9 7 29 29 H 1.07993 * 119.71317 * 179.70456 * 11 10 9 30 30 H 1.08003 * 119.66463 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.95396 * 180.02562 * 13 12 11 32 32 H 0.97002 * 119.99570 * 359.72969 * 17 15 14 33 33 H 1.08999 * 109.47153 * 55.00078 * 20 18 17 34 34 H 1.09002 * 109.46734 * 174.99230 * 20 18 17 35 35 H 0.96695 * 114.00045 * 179.97438 * 21 20 18 36 36 H 1.09000 * 109.47055 * 55.00530 * 22 18 17 37 37 H 1.09002 * 109.46679 * 175.00389 * 22 18 17 38 38 H 1.08993 * 112.84716 * 43.80225 * 23 22 18 39 39 H 1.09000 * 113.61867 * 334.56842 * 24 23 22 40 40 H 1.09008 * 113.61454 * 105.46937 * 24 23 22 41 41 H 1.09003 * 113.61688 * 270.88949 * 25 24 23 42 42 H 1.09001 * 113.61522 * 139.98240 * 25 24 23 43 43 H 1.09002 * 113.61457 * 254.53091 * 26 23 22 44 44 H 1.09006 * 113.61466 * 25.34801 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 2.5005 2.0392 -1.3999 5 1 1.4314 2.6562 0.6874 6 1 3.5315 1.4439 0.7128 7 6 2.0077 -1.2147 -0.0005 8 1 1.4716 -2.1479 0.0909 9 6 3.4115 -1.2176 -0.1204 10 6 4.0532 -0.3056 -0.9784 11 6 5.4243 -0.3206 -1.0931 12 6 6.1840 -1.2248 -0.3634 13 6 5.5783 -2.1269 0.4910 14 6 4.1928 -2.1369 0.6277 15 6 3.5424 -3.0968 1.5382 16 8 2.3418 -3.0417 1.7232 17 7 4.2785 -4.0355 2.1655 18 6 3.6322 -4.9898 3.0698 19 1 2.6402 -5.2352 2.6904 20 6 3.5062 -4.3679 4.4621 21 8 4.8094 -4.1533 5.0076 22 6 4.4754 -6.2635 3.1546 23 6 4.4980 -6.9521 1.7884 24 6 3.3243 -7.9209 1.5675 25 6 4.3320 -8.8621 0.8867 26 6 5.4204 -8.1813 1.7333 27 1 -0.4850 0.8400 0.0004 28 1 3.4703 0.4015 -1.5499 29 1 5.9137 0.3775 -1.7560 30 1 7.2593 -1.2235 -0.4643 31 1 6.1807 -2.8250 1.0534 32 1 5.2356 -4.0820 2.0147 33 1 2.9817 -3.4153 4.3884 34 1 2.9468 -5.0413 5.1115 35 1 4.8061 -3.7600 5.8910 36 1 5.4930 -6.0067 3.4489 37 1 4.0424 -6.9373 3.8939 38 1 4.6508 -6.2543 0.9653 39 1 2.9086 -8.3214 2.4921 40 1 2.5612 -7.5353 0.8913 41 1 4.4385 -8.6871 -0.1839 42 1 4.1820 -9.9135 1.1319 43 1 6.3496 -8.0060 1.1910 44 1 5.5789 -8.6521 2.7036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601544737.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:07 Heat of formation + Delta-G solvation = -55.371924 kcal Electronic energy + Delta-G solvation = -25163.381364 eV Core-core repulsion = 21659.598157 eV Total energy + Delta-G solvation = -3503.783208 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.59816 -38.62712 -37.34060 -36.42404 -34.25182 -33.52275 -31.19050 -30.43611 -29.40346 -27.37851 -25.59367 -25.32829 -23.30719 -22.47693 -21.38984 -20.18428 -19.54304 -19.26595 -17.53842 -17.34771 -16.64648 -15.67402 -15.49292 -15.23857 -14.91904 -14.40923 -14.06143 -14.01705 -13.68331 -13.62675 -13.31519 -12.78587 -12.65374 -12.45957 -12.43015 -12.11349 -11.94030 -11.70080 -11.49207 -11.43950 -10.98590 -10.87960 -10.69345 -10.52323 -10.43957 -10.14172 -10.09539 -10.00155 -9.78581 -9.74964 -9.24359 -8.49017 -8.30181 -7.79497 -7.56017 -6.85021 -4.43863 2.12760 2.61649 3.10622 3.19216 3.30541 3.93219 3.98650 4.03443 4.47266 4.55244 4.64234 4.66530 4.73313 4.85919 5.21686 5.28853 5.42263 5.51800 5.53744 5.64500 5.70033 5.75929 5.76648 5.81750 5.87311 5.91575 6.00695 6.04914 6.06532 6.11158 6.27430 6.34009 6.48546 6.53824 6.56341 6.81729 7.12251 7.19972 7.26858 7.41189 7.60298 7.72133 7.77387 8.03033 8.40314 8.51079 8.65714 8.86207 9.39976 10.13258 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.015679 B = 0.004357 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.379206 B = 6425.471206 C = 6684.384601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.397 4.397 8 H 0.114 0.886 9 C 0.118 3.882 10 C -0.227 4.227 11 C -0.066 4.066 12 C -0.252 4.252 13 C -0.042 4.042 14 C -0.245 4.245 15 C 0.561 3.439 16 O -0.529 6.529 17 N -0.733 5.733 18 C 0.155 3.845 19 H 0.095 0.905 20 C 0.062 3.938 21 O -0.569 6.569 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.139 4.139 25 C -0.143 4.143 26 C -0.137 4.137 27 H 0.285 0.715 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.393 0.607 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.373 0.627 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 -10.573 5.944 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.424 4.424 8 H 0.132 0.868 9 C 0.113 3.887 10 C -0.246 4.246 11 C -0.085 4.085 12 C -0.271 4.271 13 C -0.061 4.061 14 C -0.249 4.249 15 C 0.354 3.646 16 O -0.406 6.406 17 N -0.387 5.387 18 C 0.049 3.951 19 H 0.113 0.887 20 C -0.017 4.017 21 O -0.373 6.373 22 C -0.146 4.146 23 C -0.129 4.129 24 C -0.176 4.176 25 C -0.180 4.180 26 C -0.175 4.175 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.227 0.773 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.218 0.782 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.692 -10.707 5.511 14.289 hybrid contribution 0.543 1.079 0.473 1.298 sum 8.235 -9.628 5.984 14.011 Atomic orbital electron populations 1.69547 1.08082 1.30138 1.34608 1.26285 0.94890 1.01401 0.91463 0.86404 0.80993 0.79859 0.79335 1.19482 1.21789 1.16654 1.19923 0.90039 0.96011 1.36454 0.86791 1.17574 0.93475 0.89360 0.88250 1.21181 0.94283 1.05026 1.04090 1.20739 0.93904 0.96721 0.97111 1.20304 0.97720 1.02947 1.06151 1.20811 0.93490 0.96108 0.95686 1.19495 0.92462 1.06923 1.06062 1.18360 0.86541 0.80179 0.79552 1.90757 1.14345 1.71377 1.64141 1.45964 1.11248 1.33778 1.47745 1.20826 0.98237 0.88336 0.87676 0.88663 1.22722 0.84217 0.99937 0.94836 1.86455 1.28913 1.85604 1.36338 1.21721 1.01092 0.95318 0.96457 1.22594 0.96529 0.95470 0.98336 1.22983 0.96795 0.97109 1.00759 1.22793 0.97171 0.98551 0.99512 1.22937 0.97333 0.97144 1.00070 0.90387 0.87745 0.88587 0.88534 0.88597 0.77273 0.92769 0.93694 0.78162 0.90706 0.91184 0.88731 0.90345 0.91445 0.90341 0.91894 0.91765 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -22.02 13.92 55.56 0.77 -21.25 16 2 C 0.08 2.13 5.51 -17.30 -0.10 2.04 16 3 Si 0.91 21.08 24.48 -169.99 -4.16 16.91 16 4 H -0.27 -5.93 6.70 56.52 0.38 -5.55 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.80 6.67 56.52 0.38 -5.42 16 7 C -0.40 -11.19 8.08 -37.82 -0.31 -11.50 16 8 H 0.11 3.54 6.37 -52.48 -0.33 3.21 16 9 C 0.12 3.06 5.04 -106.54 -0.54 2.52 16 10 C -0.23 -5.40 6.93 -38.88 -0.27 -5.67 16 11 C -0.07 -1.39 10.01 -39.60 -0.40 -1.78 16 12 C -0.25 -5.00 10.03 -39.37 -0.39 -5.40 16 13 C -0.04 -0.85 9.52 -39.22 -0.37 -1.22 16 14 C -0.24 -5.76 5.92 -104.37 -0.62 -6.38 16 15 C 0.56 12.67 7.69 -12.52 -0.10 12.58 16 16 O -0.53 -13.88 13.34 5.28 0.07 -13.81 16 17 N -0.73 -12.76 4.34 -54.88 -0.24 -13.00 16 18 C 0.15 2.33 2.37 -67.93 -0.16 2.17 16 19 H 0.10 1.60 7.58 -51.93 -0.39 1.21 16 20 C 0.06 0.87 6.85 37.16 0.25 1.13 16 21 O -0.57 -7.34 12.83 -35.23 -0.45 -7.79 16 22 C -0.11 -1.28 4.30 -26.73 -0.12 -1.40 16 23 C -0.11 -1.30 3.59 -89.81 -0.32 -1.62 16 24 C -0.14 -1.56 7.63 -25.92 -0.20 -1.75 16 25 C -0.14 -1.42 8.08 -25.92 -0.21 -1.63 16 26 C -0.14 -1.37 7.64 -25.92 -0.20 -1.56 16 27 H 0.29 7.09 8.29 -40.82 -0.34 6.75 16 28 H 0.10 2.45 4.87 -52.49 -0.26 2.20 16 29 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.10 1.62 6.43 -52.48 -0.34 1.28 16 32 H 0.39 6.17 6.66 -40.82 -0.27 5.90 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.37 3.26 9.12 45.56 0.42 3.68 16 36 H 0.07 0.91 7.73 -51.93 -0.40 0.51 16 37 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 38 H 0.09 1.29 7.62 -51.93 -0.40 0.89 16 39 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.41 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -30.86 352.05 -8.51 -39.37 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.78 Total: 13.75 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -4.04 Total: -19.50 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.53 Total: -34.25 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.38 Total: -21.60 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.16 Total: 16.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -8.51 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601544737.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.000 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds