Wall clock time and date at job start Tue Mar 31 2020 08:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48505 * 109.47167 * 90.00093 * 3 2 1 5 5 H 1.48494 * 109.47559 * 209.99989 * 3 2 1 6 6 H 1.48501 * 109.47160 * 330.00342 * 3 2 1 7 7 C 1.40269 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00129 * 160.94683 * 7 2 1 9 9 C 1.40894 * 120.00263 * 340.94633 * 7 2 1 10 10 C 1.40699 * 120.32449 * 325.85093 * 9 7 2 11 11 C 1.37607 * 119.88157 * 180.02562 * 10 9 7 12 12 C 1.38823 * 120.56903 * 359.97438 * 11 10 9 13 13 C 1.38226 * 120.67661 * 0.02562 * 12 11 10 14 14 C 1.39233 * 120.09047 * 359.70935 * 13 12 11 15 15 C 1.47428 * 120.28047 * 180.28390 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.05795 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.05677 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47066 * 34.99909 * 18 17 15 20 20 C 1.52996 * 109.47052 * 274.99590 * 18 17 15 21 21 O 1.42900 * 109.47366 * 295.00233 * 20 18 17 22 22 C 1.53008 * 109.47107 * 154.99896 * 18 17 15 23 23 C 1.54264 * 110.03172 * 57.16368 * 22 18 17 24 24 C 1.54883 * 104.19896 * 217.10386 * 23 22 18 25 25 C 1.54885 * 102.74655 * 37.94476 * 24 23 22 26 26 C 1.53875 * 110.03218 * 300.00255 * 22 18 17 27 27 H 0.97003 * 120.00317 * 174.75474 * 1 2 3 28 28 H 1.08003 * 120.06129 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.71318 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.66254 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.95375 * 179.97438 * 13 12 11 32 32 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 33 33 H 1.08997 * 109.46689 * 55.00214 * 20 18 17 34 34 H 1.09006 * 109.47217 * 175.00015 * 20 18 17 35 35 H 0.96704 * 113.99901 * 179.97438 * 21 20 18 36 36 H 1.08995 * 110.01466 * 178.60991 * 22 18 17 37 37 H 1.09001 * 110.48792 * 335.78716 * 23 22 18 38 38 H 1.09013 * 110.48468 * 98.42589 * 23 22 18 39 39 H 1.09001 * 110.75542 * 279.63356 * 24 23 22 40 40 H 1.08997 * 110.91412 * 156.32996 * 24 23 22 41 41 H 1.09004 * 110.49298 * 203.37864 * 25 24 23 42 42 H 1.09004 * 110.60349 * 80.79326 * 25 24 23 43 43 H 1.09000 * 110.02801 * 238.57253 * 26 22 18 44 44 H 1.09006 * 110.03136 * 359.97438 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4879 2.0463 1.4001 5 1 3.5379 1.4401 -0.7000 6 1 1.4378 2.6527 -0.7000 7 6 2.0076 -1.2148 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3972 10 6 0.3812 -2.3730 1.4066 11 6 -0.2442 -3.5377 1.7883 12 6 0.0825 -4.7448 1.1855 13 6 1.0415 -4.7999 0.1916 14 6 1.6877 -3.6374 -0.2201 15 6 2.7068 -3.6904 -1.2842 16 8 3.2296 -2.6651 -1.6771 17 7 3.0592 -4.8752 -1.8215 18 6 4.0723 -4.9278 -2.8784 19 1 4.8273 -4.1631 -2.6963 20 6 3.4086 -4.6769 -4.2339 21 8 2.5024 -5.7427 -4.5253 22 6 4.7341 -6.3074 -2.8822 23 6 3.6663 -7.4052 -3.0681 24 6 4.1539 -8.5660 -2.1660 25 6 4.7232 -7.8236 -0.9317 26 6 5.4060 -6.5734 -1.5238 27 1 -0.4851 -0.8365 -0.0768 28 1 0.1209 -1.4385 1.8814 29 1 -0.9956 -3.5126 2.5636 30 1 -0.4173 -5.6502 1.4968 31 1 1.2868 -5.7454 -0.2692 32 1 2.6426 -5.6931 -1.5078 33 1 2.8624 -3.7341 -4.2019 34 1 4.1732 -4.6277 -5.0093 35 1 2.0444 -5.6492 -5.3718 36 1 5.4727 -6.3646 -3.6817 37 1 2.6909 -7.0486 -2.7371 38 1 3.6238 -7.7235 -4.1098 39 1 4.9341 -9.1411 -2.6646 40 1 3.3235 -9.2113 -1.8795 41 1 5.4521 -8.4472 -0.4140 42 1 3.9201 -7.5345 -0.2537 43 1 6.4706 -6.7605 -1.6642 44 1 5.2611 -5.7195 -0.8619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601590382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:25 Heat of formation + Delta-G solvation = -86.018166 kcal Electronic energy + Delta-G solvation = -25713.454123 eV Core-core repulsion = 22208.341994 eV Total energy + Delta-G solvation = -3505.112129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.79564 -38.24147 -36.75981 -36.24181 -34.08128 -33.41114 -30.78053 -29.57309 -28.96895 -28.56561 -26.91018 -25.20900 -22.91595 -21.71301 -20.90167 -20.70107 -19.56443 -19.04018 -18.01089 -17.24881 -16.53790 -15.96509 -15.43505 -14.76708 -14.56375 -14.27131 -14.10575 -13.99781 -13.73179 -13.36626 -13.16064 -12.85831 -12.75617 -12.56112 -12.20486 -12.05422 -11.74260 -11.13663 -11.03534 -10.91645 -10.86277 -10.74050 -10.68215 -10.56952 -10.47199 -10.37147 -10.32100 -10.11466 -9.77747 -9.57392 -9.06442 -8.47244 -8.29644 -7.76240 -7.58087 -7.11764 -4.43918 2.27048 2.75488 3.20296 3.31679 3.41902 3.95569 4.05011 4.08433 4.46327 4.62284 4.66292 4.71463 4.80897 5.22710 5.38962 5.48925 5.51573 5.56043 5.59885 5.66761 5.76370 5.82286 5.89404 5.94289 5.96881 5.99694 6.07518 6.15364 6.17586 6.26956 6.36981 6.47609 6.51788 6.59826 6.74496 7.01847 7.21908 7.31087 7.52348 7.63741 7.73466 7.75442 7.91825 8.12482 8.24268 8.44978 8.76215 8.88966 9.41093 10.06391 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.004813 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.495888 B = 5816.238704 C = 6646.317083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.031 3.969 3 Si 1.073 2.927 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.106 0.894 9 C 0.121 3.879 10 C -0.202 4.202 11 C -0.076 4.076 12 C -0.259 4.259 13 C -0.042 4.042 14 C -0.263 4.263 15 C 0.563 3.437 16 O -0.542 6.542 17 N -0.732 5.732 18 C 0.158 3.842 19 H 0.094 0.906 20 C 0.063 3.937 21 O -0.561 6.561 22 C -0.094 4.094 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.298 0.702 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.393 0.607 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.367 0.633 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 -11.544 -5.808 14.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.191 4.191 3 Si 0.896 3.104 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.202 1.202 7 C -0.494 4.494 8 H 0.123 0.877 9 C 0.117 3.883 10 C -0.221 4.221 11 C -0.095 4.095 12 C -0.279 4.279 13 C -0.061 4.061 14 C -0.268 4.268 15 C 0.358 3.642 16 O -0.421 6.421 17 N -0.387 5.387 18 C 0.052 3.948 19 H 0.111 0.889 20 C -0.016 4.016 21 O -0.365 6.365 22 C -0.113 4.113 23 C -0.138 4.138 24 C -0.169 4.169 25 C -0.162 4.162 26 C -0.161 4.161 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.230 0.770 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.213 0.787 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.855 -9.343 -5.460 12.810 hybrid contribution -0.363 -1.965 -0.461 2.051 sum 6.492 -11.308 -5.921 14.320 Atomic orbital electron populations 1.70357 1.08263 1.34327 1.28995 1.27248 0.95701 1.04658 0.91452 0.83523 0.75698 0.73178 0.77981 1.20088 1.19797 1.20210 1.21199 1.01646 0.91841 1.34716 0.87650 1.17513 0.89695 0.92089 0.89049 1.21248 1.03040 0.97066 1.00756 1.20739 0.97640 0.93212 0.97869 1.20241 1.05814 0.96688 1.05138 1.20721 0.94777 0.95399 0.95215 1.19409 1.07735 0.95240 1.04419 1.18390 0.82017 0.82249 0.81584 1.90666 1.55193 1.33076 1.63210 1.46023 1.43108 1.09671 1.39881 1.20867 0.90668 0.97298 0.85942 0.88856 1.22659 0.92170 0.90204 0.96547 1.86633 1.60237 1.46982 1.42692 1.21985 0.97366 0.94315 0.97605 1.22311 0.98519 0.93469 0.99493 1.22606 1.00004 0.97819 0.96484 1.22351 0.99895 0.96393 0.97541 1.22212 0.98939 0.98546 0.96384 0.88798 0.87586 0.88938 0.88953 0.89223 0.77023 0.92906 0.93789 0.78676 0.90633 0.90515 0.91440 0.92115 0.91965 0.92189 0.91594 0.92229 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.45 12.57 55.56 0.70 -20.76 16 2 C 0.03 0.80 5.04 -17.30 -0.09 0.72 16 3 Si 1.07 22.69 29.98 -169.99 -5.10 17.59 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.47 -12.86 7.66 -37.81 -0.29 -13.15 16 8 H 0.11 3.03 5.91 -52.49 -0.31 2.72 16 9 C 0.12 3.24 5.18 -106.54 -0.55 2.68 16 10 C -0.20 -5.07 7.86 -38.88 -0.31 -5.38 16 11 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 12 C -0.26 -5.52 10.03 -39.37 -0.39 -5.92 16 13 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 14 C -0.26 -6.44 5.92 -104.37 -0.62 -7.06 16 15 C 0.56 12.98 7.70 -12.52 -0.10 12.89 16 16 O -0.54 -14.10 13.22 5.26 0.07 -14.03 16 17 N -0.73 -13.06 4.13 -54.88 -0.23 -13.29 16 18 C 0.16 2.40 2.06 -67.93 -0.14 2.26 16 19 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 20 C 0.06 0.88 6.85 37.16 0.25 1.14 16 21 O -0.56 -7.02 9.88 -35.23 -0.35 -7.37 16 22 C -0.09 -1.15 2.80 -89.50 -0.25 -1.40 16 23 C -0.10 -1.18 4.26 -25.08 -0.11 -1.29 16 24 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 25 C -0.12 -1.40 6.83 -25.08 -0.17 -1.57 16 26 C -0.12 -1.50 6.19 -25.62 -0.16 -1.66 16 27 H 0.30 8.24 6.54 -40.82 -0.27 7.98 16 28 H 0.11 2.72 6.93 -52.48 -0.36 2.35 16 29 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.09 1.65 6.41 -52.49 -0.34 1.31 16 32 H 0.39 6.55 4.88 -40.82 -0.20 6.35 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.37 3.19 9.12 45.56 0.42 3.60 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.04 5.30 -51.93 -0.28 0.77 16 38 H 0.07 0.77 7.55 -51.92 -0.39 0.38 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.02 7.38 -51.93 -0.38 0.63 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -29.90 344.76 -9.09 -38.99 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -5.53 Total: 16.33 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: -3.86 Total: -22.66 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.47 Total: -34.04 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.28 Total: -21.40 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.10 Total: 17.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.90 -9.09 -38.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601590382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.028 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds