Wall clock time and date at job start Tue Mar 31 2020 08:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86796 * 120.00329 * 2 1 4 4 H 1.48505 * 109.47167 * 90.00093 * 3 2 1 5 5 H 1.48494 * 109.47559 * 209.99989 * 3 2 1 6 6 H 1.48501 * 109.47160 * 330.00342 * 3 2 1 7 7 C 1.40269 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00129 * 160.94683 * 7 2 1 9 9 C 1.40894 * 120.00263 * 340.94633 * 7 2 1 10 10 C 1.40699 * 120.32449 * 325.85093 * 9 7 2 11 11 C 1.37607 * 119.88157 * 180.02562 * 10 9 7 12 12 C 1.38823 * 120.56903 * 359.97438 * 11 10 9 13 13 C 1.38226 * 120.67661 * 0.02562 * 12 11 10 14 14 C 1.39233 * 120.09047 * 359.70935 * 13 12 11 15 15 C 1.47428 * 120.28047 * 180.28390 * 14 13 12 16 16 O 1.21618 * 119.99913 * 177.05795 * 15 14 13 17 17 N 1.34774 * 120.00477 * 357.05677 * 15 14 13 18 18 C 1.46497 * 120.00234 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.47066 * 34.99909 * 18 17 15 20 20 C 1.52996 * 109.47052 * 274.99590 * 18 17 15 21 21 O 1.42900 * 109.47366 * 295.00233 * 20 18 17 22 22 C 1.53008 * 109.47107 * 154.99896 * 18 17 15 23 23 C 1.54264 * 110.03172 * 57.16368 * 22 18 17 24 24 C 1.54883 * 104.19896 * 217.10386 * 23 22 18 25 25 C 1.54885 * 102.74655 * 37.94476 * 24 23 22 26 26 C 1.53875 * 110.03218 * 300.00255 * 22 18 17 27 27 H 0.97003 * 120.00317 * 174.75474 * 1 2 3 28 28 H 1.08003 * 120.06129 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.71318 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.66254 * 179.97438 * 12 11 10 31 31 H 1.07997 * 119.95375 * 179.97438 * 13 12 11 32 32 H 0.97004 * 119.99726 * 359.97438 * 17 15 14 33 33 H 1.08997 * 109.46689 * 55.00214 * 20 18 17 34 34 H 1.09006 * 109.47217 * 175.00015 * 20 18 17 35 35 H 0.96704 * 113.99901 * 179.97438 * 21 20 18 36 36 H 1.08995 * 110.01466 * 178.60991 * 22 18 17 37 37 H 1.09001 * 110.48792 * 335.78716 * 23 22 18 38 38 H 1.09013 * 110.48468 * 98.42589 * 23 22 18 39 39 H 1.09001 * 110.75542 * 279.63356 * 24 23 22 40 40 H 1.08997 * 110.91412 * 156.32996 * 24 23 22 41 41 H 1.09004 * 110.49298 * 203.37864 * 25 24 23 42 42 H 1.09004 * 110.60349 * 80.79326 * 25 24 23 43 43 H 1.09000 * 110.02801 * 238.57253 * 26 22 18 44 44 H 1.09006 * 110.03136 * 359.97438 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.4879 2.0463 1.4001 5 1 3.5379 1.4401 -0.7000 6 1 1.4378 2.6527 -0.7000 7 6 2.0076 -1.2148 -0.0005 8 1 3.0432 -1.2404 -0.3059 9 6 1.3610 -2.4017 0.3972 10 6 0.3812 -2.3730 1.4066 11 6 -0.2442 -3.5377 1.7883 12 6 0.0825 -4.7448 1.1855 13 6 1.0415 -4.7999 0.1916 14 6 1.6877 -3.6374 -0.2201 15 6 2.7068 -3.6904 -1.2842 16 8 3.2296 -2.6651 -1.6771 17 7 3.0592 -4.8752 -1.8215 18 6 4.0723 -4.9278 -2.8784 19 1 4.8273 -4.1631 -2.6963 20 6 3.4086 -4.6769 -4.2339 21 8 2.5024 -5.7427 -4.5253 22 6 4.7341 -6.3074 -2.8822 23 6 3.6663 -7.4052 -3.0681 24 6 4.1539 -8.5660 -2.1660 25 6 4.7232 -7.8236 -0.9317 26 6 5.4060 -6.5734 -1.5238 27 1 -0.4851 -0.8365 -0.0768 28 1 0.1209 -1.4385 1.8814 29 1 -0.9956 -3.5126 2.5636 30 1 -0.4173 -5.6502 1.4968 31 1 1.2868 -5.7454 -0.2692 32 1 2.6426 -5.6931 -1.5078 33 1 2.8624 -3.7341 -4.2019 34 1 4.1732 -4.6277 -5.0093 35 1 2.0444 -5.6492 -5.3718 36 1 5.4727 -6.3646 -3.6817 37 1 2.6909 -7.0486 -2.7371 38 1 3.6238 -7.7235 -4.1098 39 1 4.9341 -9.1411 -2.6646 40 1 3.3235 -9.2113 -1.8795 41 1 5.4521 -8.4472 -0.4140 42 1 3.9201 -7.5345 -0.2537 43 1 6.4706 -6.7605 -1.6642 44 1 5.2611 -5.7195 -0.8619 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601590382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:20:25 Heat of formation + Delta-G solvation = -104.653919 kcal Electronic energy + Delta-G solvation = -25714.262230 eV Core-core repulsion = 22208.341994 eV Total energy + Delta-G solvation = -3505.920236 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24636 -39.77342 -38.45443 -37.29776 -35.92446 -34.92484 -32.36462 -31.39266 -30.55628 -29.49319 -27.97313 -27.11556 -24.58446 -23.14087 -22.60989 -21.81256 -20.98697 -20.36355 -19.80190 -18.44012 -18.05624 -17.20981 -16.64163 -16.50123 -16.17924 -15.94335 -15.60058 -15.42452 -15.14354 -14.93265 -14.46839 -14.29268 -14.00124 -13.91099 -13.86400 -13.55879 -13.22605 -12.91247 -12.70092 -12.49572 -12.06643 -11.97346 -11.94603 -11.78355 -11.72737 -11.56931 -11.48580 -11.35471 -11.32491 -10.96530 -10.84373 -10.31256 -9.90669 -9.60345 -9.50012 -9.09388 -6.46155 0.40349 0.89444 1.45263 1.61324 1.76093 2.26773 2.30396 2.45185 2.74513 3.41543 3.56045 3.61520 3.71445 3.86054 4.17390 4.24048 4.26107 4.32442 4.42823 4.44719 4.58396 4.65241 4.70537 4.75194 4.81344 4.86308 4.87521 4.92893 4.98582 5.09776 5.13766 5.17319 5.31781 5.42289 5.44920 5.51354 5.61286 5.64382 5.68977 5.74859 5.90187 5.97673 6.20419 6.32903 6.70817 6.86128 6.88770 6.94572 7.64498 8.04269 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.004813 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.495888 B = 5816.238704 C = 6646.317083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.003 4.003 3 Si 1.118 2.882 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.096 3.904 10 C -0.225 4.225 11 C -0.072 4.072 12 C -0.244 4.244 13 C -0.042 4.042 14 C -0.281 4.281 15 C 0.558 3.442 16 O -0.581 6.581 17 N -0.710 5.710 18 C 0.150 3.850 19 H 0.072 0.928 20 C 0.073 3.927 21 O -0.563 6.563 22 C -0.085 4.085 23 C -0.096 4.096 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.124 4.124 27 H 0.282 0.718 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.126 0.874 32 H 0.402 0.598 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.719 -14.684 -6.206 17.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.218 4.218 3 Si 0.936 3.064 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.537 4.537 8 H 0.099 0.901 9 C 0.092 3.908 10 C -0.244 4.244 11 C -0.091 4.091 12 C -0.263 4.263 13 C -0.061 4.061 14 C -0.286 4.286 15 C 0.351 3.649 16 O -0.463 6.463 17 N -0.364 5.364 18 C 0.045 3.955 19 H 0.090 0.910 20 C -0.006 4.006 21 O -0.371 6.371 22 C -0.104 4.104 23 C -0.133 4.133 24 C -0.161 4.161 25 C -0.162 4.162 26 C -0.162 4.162 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.143 0.857 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.240 0.760 33 H 0.033 0.967 34 H 0.093 0.907 35 H 0.235 0.765 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.060 -12.548 -5.870 15.549 hybrid contribution -0.448 -1.300 -0.353 1.419 sum 6.613 -13.848 -6.222 16.559 Atomic orbital electron populations 1.70468 1.08618 1.33068 1.32125 1.28465 0.95841 1.07356 0.90127 0.82980 0.74446 0.69910 0.79080 1.17991 1.19975 1.19192 1.21110 1.01015 0.93489 1.38075 0.90142 1.17904 0.90410 0.92947 0.89552 1.21209 1.04170 0.97776 1.01280 1.21145 0.97318 0.92566 0.98032 1.20787 1.04426 0.97702 1.03377 1.21088 0.94104 0.95755 0.95161 1.19840 1.08283 0.95754 1.04749 1.18405 0.81773 0.83133 0.81591 1.90645 1.56511 1.34822 1.64293 1.45798 1.42786 1.08187 1.39598 1.21096 0.89790 0.98933 0.85665 0.90997 1.22420 0.92687 0.88894 0.96637 1.86582 1.60249 1.45895 1.44337 1.21977 0.97784 0.92238 0.98404 1.22245 0.97177 0.93589 1.00331 1.22579 1.00667 0.97326 0.95573 1.22358 0.99816 0.96146 0.97886 1.22215 1.00207 0.97969 0.95791 0.90550 0.89213 0.85713 0.84702 0.85654 0.76045 0.96671 0.90740 0.76472 0.88499 0.92367 0.90515 0.90512 0.91189 0.90783 0.92870 0.90595 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.37 12.57 21.88 0.27 -46.10 16 2 C 0.00 -0.15 5.04 85.37 0.43 0.28 16 3 Si 1.12 47.82 29.98 68.60 2.06 49.87 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.51 -29.88 7.66 23.41 0.18 -29.70 16 8 H 0.08 5.01 5.91 -2.91 -0.02 4.99 16 9 C 0.10 5.35 5.18 -21.11 -0.11 5.24 16 10 C -0.22 -11.60 7.86 22.72 0.18 -11.43 16 11 C -0.07 -3.11 10.01 22.26 0.22 -2.88 16 12 C -0.24 -9.59 10.03 22.41 0.22 -9.36 16 13 C -0.04 -1.75 9.53 22.51 0.21 -1.53 16 14 C -0.28 -14.04 5.92 -19.70 -0.12 -14.16 16 15 C 0.56 26.63 7.70 86.66 0.67 27.30 16 16 O -0.58 -32.10 13.22 -4.09 -0.05 -32.16 16 17 N -0.71 -25.37 4.13 -445.79 -1.84 -27.21 16 18 C 0.15 4.51 2.06 44.99 0.09 4.60 16 19 H 0.07 2.49 7.58 -2.39 -0.02 2.47 16 20 C 0.07 1.98 6.85 71.98 0.49 2.47 16 21 O -0.56 -12.92 9.88 -148.98 -1.47 -14.39 16 22 C -0.09 -1.90 2.80 -10.07 -0.03 -1.92 16 23 C -0.10 -1.96 4.26 31.67 0.14 -1.82 16 24 C -0.12 -2.15 6.91 31.88 0.22 -1.92 16 25 C -0.12 -2.48 6.83 31.67 0.22 -2.26 16 26 C -0.12 -2.81 6.19 31.32 0.19 -2.61 16 27 H 0.28 16.51 6.54 -92.71 -0.61 15.90 16 28 H 0.09 4.83 6.93 -2.91 -0.02 4.81 16 29 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.13 4.20 6.41 -2.91 -0.02 4.18 16 32 H 0.40 12.88 4.88 -92.71 -0.45 12.43 16 33 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.39 5.79 9.12 -74.05 -0.68 5.11 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.42 5.30 -2.39 -0.01 1.41 16 38 H 0.08 1.45 7.55 -2.38 -0.02 1.44 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.17 7.38 -2.38 -0.02 1.15 16 Total: -1.00 -69.78 344.76 2.24 -67.54 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: 0.06 Total: 42.16 kcal Atomic # 6 Polarization: -42.93 SS G_CDS: 3.21 Total: -39.71 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -1.57 Total: -73.31 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -1.53 Total: -46.55 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.06 Total: 49.87 kcal Total: -69.78 2.24 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601590382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.118 kcal (2) G-P(sol) polarization free energy of solvation -69.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds