Wall clock time and date at job start Tue Mar 31 2020 08:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46824 * 120.00014 * 3 2 1 6 6 H 1.48496 * 109.46969 * 239.99803 * 3 2 1 7 7 C 1.40267 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00525 * 160.88170 * 7 2 1 9 9 C 1.40891 * 120.00340 * 340.88079 * 7 2 1 10 10 C 1.40710 * 120.32363 * 325.83937 * 9 7 2 11 11 C 1.37598 * 119.88124 * 179.97438 * 10 9 7 12 12 C 1.38825 * 120.56771 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.68000 * 359.97438 * 12 11 10 14 14 C 1.39229 * 120.08892 * 359.69757 * 13 12 11 15 15 C 1.47435 * 120.28193 * 180.28134 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.92449 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.92897 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.47039 * 55.00219 * 19 18 17 21 21 C 1.53002 * 109.47262 * 295.00160 * 19 18 17 22 22 O 1.42893 * 109.46786 * 64.99777 * 21 19 18 23 23 C 1.53001 * 109.47280 * 175.00014 * 19 18 17 24 24 C 1.53000 * 109.47250 * 185.00123 * 23 19 18 25 25 C 1.52999 * 117.50034 * 243.62331 * 24 23 19 26 26 C 1.52999 * 117.50127 * 174.99660 * 24 23 19 27 27 H 0.96991 * 119.99950 * 174.80083 * 1 2 3 28 28 H 1.08004 * 120.05936 * 359.95613 * 10 9 7 29 29 H 1.08000 * 119.71650 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.66055 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.95461 * 179.97438 * 13 12 11 32 32 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 33 33 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 34 34 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 35 35 H 1.09001 * 109.46886 * 185.00064 * 21 19 18 36 36 H 1.08997 * 109.46798 * 304.99590 * 21 19 18 37 37 H 0.96709 * 113.99692 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.47083 * 304.99957 * 23 19 18 39 39 H 1.08995 * 109.47498 * 65.00099 * 23 19 18 40 40 H 1.09001 * 115.55102 * 29.33109 * 24 23 19 41 41 H 1.08996 * 117.49762 * 359.97438 * 25 24 23 42 42 H 1.08996 * 117.50149 * 145.02356 * 25 24 23 43 43 H 1.08994 * 117.50436 * 214.97999 * 26 24 23 44 44 H 1.09009 * 117.49728 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0940 1.6964 1.2125 6 1 3.0940 1.6964 -1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0430 -1.2408 -0.3058 9 6 1.3615 -2.4011 0.4007 10 6 0.3827 -2.3709 1.4112 11 6 -0.2429 -3.5349 1.7946 12 6 0.0831 -4.7428 1.1929 13 6 1.0409 -4.7994 0.1980 14 6 1.6865 -3.6375 -0.2162 15 6 2.7044 -3.6920 -1.2814 16 8 3.2248 -2.6669 -1.6782 17 7 3.0582 -4.8778 -1.8154 18 6 4.0700 -4.9320 -2.8734 19 6 4.2847 -6.3856 -3.2997 20 1 3.3297 -6.8242 -3.5889 21 6 4.8771 -7.1774 -2.1322 22 8 3.9289 -7.2327 -1.0646 23 6 5.2476 -6.4316 -4.4879 24 6 5.3655 -7.8709 -4.9933 25 6 6.7351 -8.5452 -4.8924 26 6 6.1951 -8.1105 -6.2564 27 1 -0.4850 -0.8365 -0.0761 28 1 0.1233 -1.4358 1.8853 29 1 -0.9940 -3.5086 2.5701 30 1 -0.4169 -5.6477 1.5055 31 1 1.2857 -5.7455 -0.2617 32 1 2.6428 -5.6953 -1.4992 33 1 3.7322 -4.3480 -3.7295 34 1 5.0081 -4.5207 -2.5004 35 1 5.1125 -8.1893 -2.4619 36 1 5.7868 -6.6874 -1.7853 37 1 4.2381 -7.7204 -0.2889 38 1 4.8685 -5.7956 -5.2877 39 1 6.2288 -6.0752 -4.1744 40 1 4.4846 -8.4953 -4.8440 41 1 7.5524 -7.9634 -4.4663 42 1 6.7556 -9.6134 -4.6765 43 1 5.8603 -8.8926 -6.9377 44 1 6.6566 -7.2425 -6.7275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601674108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:50 Heat of formation + Delta-G solvation = -61.202152 kcal Electronic energy + Delta-G solvation = -24553.661665 eV Core-core repulsion = 21049.625639 eV Total energy + Delta-G solvation = -3504.036026 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.23973 -38.39026 -37.08905 -36.57543 -34.51549 -33.85406 -32.21075 -29.90120 -29.24309 -26.72195 -25.85536 -24.84094 -22.64526 -22.22668 -21.10500 -20.64301 -20.46612 -19.18613 -17.96914 -17.39520 -16.39751 -15.83867 -15.69735 -15.00311 -14.72074 -14.45689 -14.23194 -14.04322 -13.82543 -13.74916 -13.38950 -12.74560 -12.54731 -12.44681 -12.14437 -12.12224 -11.82863 -11.80530 -11.58893 -11.11590 -11.06743 -10.88379 -10.76890 -10.64936 -10.46174 -10.31634 -10.16788 -10.06389 -9.93022 -9.51254 -8.99913 -8.36589 -8.15477 -7.68178 -7.51044 -7.05679 -4.37019 2.35719 2.82314 3.24617 3.36483 3.45462 3.49438 3.86473 4.10475 4.20271 4.23184 4.46485 4.64580 4.66717 4.73415 4.81640 5.01653 5.06333 5.28899 5.33938 5.43961 5.50862 5.55032 5.57388 5.67309 5.73417 5.77908 5.82097 6.00312 6.02217 6.06472 6.17752 6.24691 6.32074 6.64198 6.82065 7.08960 7.35709 7.39276 7.59356 7.59923 7.71525 7.82270 7.98568 8.20713 8.31413 8.63026 8.84397 8.96043 9.54404 10.12535 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.003538 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.374242 B = 7912.235314 C = 9133.782211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.469 4.469 8 H 0.105 0.895 9 C 0.121 3.879 10 C -0.204 4.204 11 C -0.076 4.076 12 C -0.262 4.262 13 C -0.041 4.041 14 C -0.261 4.261 15 C 0.560 3.440 16 O -0.546 6.546 17 N -0.736 5.736 18 C 0.134 3.866 19 C -0.097 4.097 20 H 0.083 0.917 21 C 0.084 3.916 22 O -0.569 6.569 23 C -0.080 4.080 24 C -0.151 4.151 25 C -0.183 4.183 26 C -0.182 4.182 27 H 0.298 0.702 28 H 0.106 0.894 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.402 0.598 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.379 0.621 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 -14.737 -6.626 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.190 4.190 3 Si 0.894 3.106 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.496 4.496 8 H 0.122 0.878 9 C 0.117 3.883 10 C -0.223 4.223 11 C -0.095 4.095 12 C -0.281 4.281 13 C -0.060 4.060 14 C -0.266 4.266 15 C 0.354 3.646 16 O -0.425 6.425 17 N -0.394 5.394 18 C 0.009 3.991 19 C -0.116 4.116 20 H 0.101 0.899 21 C 0.006 3.994 22 O -0.375 6.375 23 C -0.118 4.118 24 C -0.169 4.169 25 C -0.220 4.220 26 C -0.219 4.219 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.241 0.759 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.226 0.774 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.434 -11.995 -7.296 16.915 hybrid contribution 0.253 -2.692 0.467 2.744 sum 9.687 -14.687 -6.829 18.873 Atomic orbital electron populations 1.70377 1.08241 1.34270 1.29200 1.27241 0.95714 1.04620 0.91452 0.83559 0.75512 0.73352 0.78165 1.20016 1.20028 1.19863 1.21156 1.01657 0.91918 1.34851 0.87769 1.17520 0.89671 0.92111 0.89044 1.21233 1.03195 0.97051 1.00843 1.20732 0.97647 0.93248 0.97885 1.20240 1.05987 0.96606 1.05290 1.20773 0.94489 0.95602 0.95089 1.19447 1.07662 0.95219 1.04256 1.18387 0.82116 0.82293 0.81819 1.90656 1.55641 1.33395 1.62828 1.46042 1.43207 1.10001 1.40156 1.21057 0.92723 0.94070 0.91266 1.21429 1.00013 0.96026 0.94123 0.89862 1.22217 0.91248 0.98504 0.87396 1.86358 1.44092 1.78936 1.28070 1.21094 0.99614 0.94416 0.96687 1.22362 0.95212 0.97572 1.01744 1.23055 0.97215 1.00884 1.00828 1.22972 1.04466 1.03467 0.90984 0.88847 0.87624 0.89009 0.89020 0.88781 0.75916 0.92394 0.92641 0.93487 0.93771 0.77350 0.90415 0.91240 0.87695 0.88778 0.89049 0.88946 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.99 12.57 55.56 0.70 -21.29 16 2 C 0.03 0.83 5.04 -17.30 -0.09 0.74 16 3 Si 1.07 23.20 29.98 -169.99 -5.10 18.10 16 4 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.47 -13.33 7.66 -37.82 -0.29 -13.62 16 8 H 0.10 3.10 5.92 -52.48 -0.31 2.79 16 9 C 0.12 3.34 5.17 -106.54 -0.55 2.79 16 10 C -0.20 -5.26 7.86 -38.88 -0.31 -5.56 16 11 C -0.08 -1.75 10.01 -39.60 -0.40 -2.14 16 12 C -0.26 -5.72 10.03 -39.37 -0.39 -6.11 16 13 C -0.04 -0.91 9.53 -39.22 -0.37 -1.28 16 14 C -0.26 -6.65 5.92 -104.37 -0.62 -7.27 16 15 C 0.56 13.74 7.73 -12.52 -0.10 13.65 16 16 O -0.55 -15.10 13.56 5.27 0.07 -15.03 16 17 N -0.74 -14.10 4.95 -61.38 -0.30 -14.41 16 18 C 0.13 2.12 5.06 -4.05 -0.02 2.10 16 19 C -0.10 -1.10 2.25 -90.62 -0.20 -1.30 16 20 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 21 C 0.08 0.86 6.32 37.16 0.23 1.10 16 22 O -0.57 -6.60 10.88 -35.23 -0.38 -6.98 16 23 C -0.08 -0.73 4.96 -26.73 -0.13 -0.87 16 24 C -0.15 -1.20 4.65 -90.62 -0.42 -1.62 16 25 C -0.18 -1.30 10.18 -26.73 -0.27 -1.57 16 26 C -0.18 -1.31 10.25 -26.73 -0.27 -1.59 16 27 H 0.30 8.41 6.54 -40.82 -0.27 8.14 16 28 H 0.11 2.77 6.93 -52.48 -0.36 2.40 16 29 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.09 1.81 6.41 -52.49 -0.34 1.48 16 32 H 0.40 7.11 4.33 -40.82 -0.18 6.93 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.40 7.23 -51.93 -0.38 0.02 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.38 2.90 9.12 45.56 0.42 3.32 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 40 H 0.10 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -32.17 357.60 -9.51 -41.68 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -5.68 Total: 15.10 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -4.20 Total: -22.57 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.39 Total: -35.69 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.31 Total: -22.01 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.10 Total: 18.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.17 -9.51 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601674108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.525 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds