Wall clock time and date at job start Tue Mar 31 2020 08:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48501 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.46824 * 120.00014 * 3 2 1 6 6 H 1.48496 * 109.46969 * 239.99803 * 3 2 1 7 7 C 1.40267 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00525 * 160.88170 * 7 2 1 9 9 C 1.40891 * 120.00340 * 340.88079 * 7 2 1 10 10 C 1.40710 * 120.32363 * 325.83937 * 9 7 2 11 11 C 1.37598 * 119.88124 * 179.97438 * 10 9 7 12 12 C 1.38825 * 120.56771 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.68000 * 359.97438 * 12 11 10 14 14 C 1.39229 * 120.08892 * 359.69757 * 13 12 11 15 15 C 1.47435 * 120.28193 * 180.28134 * 14 13 12 16 16 O 1.21609 * 119.99968 * 176.92449 * 15 14 13 17 17 N 1.34776 * 119.99851 * 356.92897 * 15 14 13 18 18 C 1.46494 * 120.00009 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47394 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.47039 * 55.00219 * 19 18 17 21 21 C 1.53002 * 109.47262 * 295.00160 * 19 18 17 22 22 O 1.42893 * 109.46786 * 64.99777 * 21 19 18 23 23 C 1.53001 * 109.47280 * 175.00014 * 19 18 17 24 24 C 1.53000 * 109.47250 * 185.00123 * 23 19 18 25 25 C 1.52999 * 117.50034 * 243.62331 * 24 23 19 26 26 C 1.52999 * 117.50127 * 174.99660 * 24 23 19 27 27 H 0.96991 * 119.99950 * 174.80083 * 1 2 3 28 28 H 1.08004 * 120.05936 * 359.95613 * 10 9 7 29 29 H 1.08000 * 119.71650 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.66055 * 179.97438 * 12 11 10 31 31 H 1.07999 * 119.95461 * 179.97438 * 13 12 11 32 32 H 0.96994 * 120.00160 * 0.02562 * 17 15 14 33 33 H 1.09004 * 109.47039 * 299.99900 * 18 17 15 34 34 H 1.09005 * 109.47040 * 59.99578 * 18 17 15 35 35 H 1.09001 * 109.46886 * 185.00064 * 21 19 18 36 36 H 1.08997 * 109.46798 * 304.99590 * 21 19 18 37 37 H 0.96709 * 113.99692 * 180.02562 * 22 21 19 38 38 H 1.09004 * 109.47083 * 304.99957 * 23 19 18 39 39 H 1.08995 * 109.47498 * 65.00099 * 23 19 18 40 40 H 1.09001 * 115.55102 * 29.33109 * 24 23 19 41 41 H 1.08996 * 117.49762 * 359.97438 * 25 24 23 42 42 H 1.08996 * 117.50149 * 145.02356 * 25 24 23 43 43 H 1.08994 * 117.50436 * 214.97999 * 26 24 23 44 44 H 1.09009 * 117.49728 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 1.2753 2.7465 -0.0006 5 1 3.0940 1.6964 1.2125 6 1 3.0940 1.6964 -1.2125 7 6 2.0076 -1.2148 0.0005 8 1 3.0430 -1.2408 -0.3058 9 6 1.3615 -2.4011 0.4007 10 6 0.3827 -2.3709 1.4112 11 6 -0.2429 -3.5349 1.7946 12 6 0.0831 -4.7428 1.1929 13 6 1.0409 -4.7994 0.1980 14 6 1.6865 -3.6375 -0.2162 15 6 2.7044 -3.6920 -1.2814 16 8 3.2248 -2.6669 -1.6782 17 7 3.0582 -4.8778 -1.8154 18 6 4.0700 -4.9320 -2.8734 19 6 4.2847 -6.3856 -3.2997 20 1 3.3297 -6.8242 -3.5889 21 6 4.8771 -7.1774 -2.1322 22 8 3.9289 -7.2327 -1.0646 23 6 5.2476 -6.4316 -4.4879 24 6 5.3655 -7.8709 -4.9933 25 6 6.7351 -8.5452 -4.8924 26 6 6.1951 -8.1105 -6.2564 27 1 -0.4850 -0.8365 -0.0761 28 1 0.1233 -1.4358 1.8853 29 1 -0.9940 -3.5086 2.5701 30 1 -0.4169 -5.6477 1.5055 31 1 1.2857 -5.7455 -0.2617 32 1 2.6428 -5.6953 -1.4992 33 1 3.7322 -4.3480 -3.7295 34 1 5.0081 -4.5207 -2.5004 35 1 5.1125 -8.1893 -2.4619 36 1 5.7868 -6.6874 -1.7853 37 1 4.2381 -7.7204 -0.2889 38 1 4.8685 -5.7956 -5.2877 39 1 6.2288 -6.0752 -4.1744 40 1 4.4846 -8.4953 -4.8440 41 1 7.5524 -7.9634 -4.4663 42 1 6.7556 -9.6134 -4.6765 43 1 5.8603 -8.8926 -6.9377 44 1 6.6566 -7.2425 -6.7275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601674108.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:49 Heat of formation + Delta-G solvation = -81.770210 kcal Electronic energy + Delta-G solvation = -24554.553563 eV Core-core repulsion = 21049.625639 eV Total energy + Delta-G solvation = -3504.927923 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85798 -39.53512 -38.61754 -37.62693 -36.00681 -35.56510 -33.60292 -31.74623 -31.13217 -27.87203 -27.11774 -26.52389 -23.98092 -23.17561 -22.78756 -21.83345 -21.49401 -20.76485 -19.88934 -18.35389 -17.94860 -16.99259 -16.79808 -16.48925 -16.25705 -15.93664 -15.67099 -15.54270 -15.22300 -15.11908 -14.87752 -14.37871 -13.95212 -13.90681 -13.52142 -13.46757 -13.10293 -12.89628 -12.68459 -12.66560 -12.47707 -12.33980 -12.01790 -11.98752 -11.90989 -11.76629 -11.44482 -11.09549 -10.95617 -10.89085 -10.66612 -10.30270 -9.89166 -9.57002 -9.47627 -9.08361 -6.44675 0.43059 0.91960 1.45988 1.62206 1.76840 2.29160 2.31913 2.49254 2.76173 2.93467 3.33739 3.57584 3.59469 3.86935 4.06507 4.10379 4.16246 4.25101 4.27331 4.33988 4.47169 4.49147 4.58954 4.66167 4.71156 4.76264 4.83361 4.88086 4.90731 4.92292 5.06235 5.09047 5.16005 5.21381 5.30324 5.41423 5.44931 5.66112 5.71231 5.75933 5.92153 5.99232 6.23004 6.35502 6.74772 6.87476 6.91825 7.08193 7.69871 8.05448 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.017940 B = 0.003538 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.374242 B = 7912.235314 C = 9133.782211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.004 4.004 3 Si 1.117 2.883 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.272 1.272 7 C -0.513 4.513 8 H 0.079 0.921 9 C 0.095 3.905 10 C -0.227 4.227 11 C -0.072 4.072 12 C -0.244 4.244 13 C -0.039 4.039 14 C -0.281 4.281 15 C 0.551 3.449 16 O -0.588 6.588 17 N -0.715 5.715 18 C 0.129 3.871 19 C -0.085 4.085 20 H 0.084 0.916 21 C 0.086 3.914 22 O -0.591 6.591 23 C -0.075 4.075 24 C -0.156 4.156 25 C -0.177 4.177 26 C -0.183 4.183 27 H 0.282 0.718 28 H 0.090 0.910 29 H 0.126 0.874 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.396 0.604 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 -17.734 -6.473 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.218 4.218 3 Si 0.934 3.066 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.097 0.903 9 C 0.091 3.909 10 C -0.246 4.246 11 C -0.090 4.090 12 C -0.263 4.263 13 C -0.058 4.058 14 C -0.286 4.286 15 C 0.343 3.657 16 O -0.470 6.470 17 N -0.371 5.371 18 C 0.005 3.995 19 C -0.104 4.104 20 H 0.102 0.898 21 C 0.009 3.991 22 O -0.400 6.400 23 C -0.113 4.113 24 C -0.174 4.174 25 C -0.214 4.214 26 C -0.220 4.220 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.253 0.747 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.247 0.753 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.616 -15.072 -7.133 19.248 hybrid contribution 0.178 -2.064 0.427 2.115 sum 9.794 -17.136 -6.706 20.845 Atomic orbital electron populations 1.70492 1.08586 1.33029 1.32196 1.28494 0.95870 1.07374 0.90107 0.83017 0.74776 0.70047 0.78752 1.18725 1.18310 1.19764 1.21091 1.01048 0.93657 1.38259 0.90300 1.17917 0.90440 0.92930 0.89596 1.21206 1.04253 0.97851 1.01309 1.21155 0.97287 0.92553 0.98036 1.20804 1.04456 0.97687 1.03379 1.21126 0.93782 0.95826 0.95020 1.19847 1.08265 0.95863 1.04621 1.18520 0.82002 0.83186 0.81954 1.90632 1.57085 1.35217 1.64089 1.45877 1.42900 1.08597 1.39746 1.21281 0.91121 0.97420 0.89681 1.21364 1.00881 0.92612 0.95529 0.89800 1.22232 0.90662 0.99583 0.86657 1.86265 1.44976 1.79600 1.29183 1.21029 0.99042 0.95604 0.95593 1.22264 0.95921 0.96591 1.02659 1.23126 0.96454 1.01428 1.00424 1.23048 1.04102 1.03741 0.91127 0.90577 0.89186 0.85619 0.84571 0.85257 0.74737 0.93616 0.93579 0.90901 0.93948 0.75327 0.90868 0.90929 0.87414 0.88618 0.88020 0.88140 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.18 12.57 21.88 0.27 -46.91 16 2 C 0.00 -0.20 5.04 85.37 0.43 0.23 16 3 Si 1.12 48.62 29.98 68.60 2.06 50.68 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.51 -30.84 7.66 23.41 0.18 -30.66 16 8 H 0.08 5.03 5.92 -2.91 -0.02 5.01 16 9 C 0.10 5.43 5.17 -21.11 -0.11 5.33 16 10 C -0.23 -11.89 7.86 22.72 0.18 -11.71 16 11 C -0.07 -3.13 10.01 22.26 0.22 -2.91 16 12 C -0.24 -9.71 10.03 22.41 0.22 -9.49 16 13 C -0.04 -1.64 9.53 22.50 0.21 -1.42 16 14 C -0.28 -14.45 5.92 -19.70 -0.12 -14.57 16 15 C 0.55 27.64 7.73 86.67 0.67 28.31 16 16 O -0.59 -34.16 13.56 -4.06 -0.06 -34.22 16 17 N -0.71 -27.08 4.95 -466.37 -2.31 -29.39 16 18 C 0.13 4.09 5.06 86.38 0.44 4.53 16 19 C -0.09 -1.80 2.25 -10.79 -0.02 -1.82 16 20 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 21 C 0.09 1.56 6.32 71.98 0.46 2.01 16 22 O -0.59 -12.10 10.88 -148.98 -1.62 -13.72 16 23 C -0.07 -1.25 4.96 30.59 0.15 -1.10 16 24 C -0.16 -2.11 4.65 -10.79 -0.05 -2.16 16 25 C -0.18 -2.04 10.18 30.60 0.31 -1.73 16 26 C -0.18 -2.25 10.25 30.60 0.31 -1.93 16 27 H 0.28 16.75 6.54 -92.71 -0.61 16.15 16 28 H 0.09 4.91 6.93 -2.91 -0.02 4.89 16 29 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.13 4.47 6.41 -2.91 -0.02 4.45 16 32 H 0.41 13.79 4.33 -92.71 -0.40 13.39 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.07 0.98 7.23 -2.39 -0.02 0.96 16 36 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.40 4.90 9.12 -74.05 -0.68 4.23 16 38 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.07 1.18 7.87 -2.39 -0.02 1.16 16 40 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16 41 H 0.10 1.08 8.03 -2.39 -0.02 1.06 16 42 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -73.78 357.60 1.94 -71.84 By element: Atomic # 1 Polarization: 40.73 SS G_CDS: 0.10 Total: 40.84 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.49 Total: -39.11 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -2.04 Total: -76.30 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.68 Total: -47.94 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.06 Total: 50.68 kcal Total: -73.78 1.94 -71.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601674108.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.931 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds