Wall clock time and date at job start Tue Mar 31 2020 08:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30624 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48498 * 109.46901 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47069 * 120.00198 * 3 2 1 6 6 H 1.48502 * 109.47138 * 240.00096 * 3 2 1 7 7 C 1.40277 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00082 * 157.86069 * 7 2 1 9 9 C 1.40892 * 119.99806 * 337.86740 * 7 2 1 10 10 C 1.40707 * 120.32692 * 327.55206 * 9 7 2 11 11 C 1.37597 * 119.88073 * 180.02562 * 10 9 7 12 12 C 1.38827 * 120.57254 * 0.02562 * 11 10 9 13 13 C 1.38229 * 120.67609 * 359.97438 * 12 11 10 14 14 C 1.39228 * 120.08822 * 359.72416 * 13 12 11 15 15 C 1.47432 * 120.27971 * 180.27897 * 14 13 12 16 16 O 1.21610 * 119.99862 * 174.88180 * 15 14 13 17 17 N 1.34774 * 120.00277 * 354.88595 * 15 14 13 18 18 C 1.46496 * 120.00269 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47273 * 180.02562 * 18 17 15 20 20 H 1.08998 * 109.46805 * 304.99726 * 19 18 17 21 21 C 1.52996 * 109.47109 * 64.99894 * 19 18 17 22 22 O 1.42902 * 109.46900 * 183.02017 * 21 19 18 23 23 C 1.53006 * 109.47063 * 185.00104 * 19 18 17 24 24 C 1.52997 * 109.46999 * 65.22868 * 23 19 18 25 25 C 1.53007 * 117.49942 * 242.57452 * 24 23 19 26 26 C 1.53008 * 117.49697 * 173.91908 * 24 23 19 27 27 H 0.97004 * 120.00019 * 175.14771 * 1 2 3 28 28 H 1.08000 * 120.05934 * 359.97438 * 10 9 7 29 29 H 1.07999 * 119.71676 * 179.97438 * 11 10 9 30 30 H 1.07997 * 119.66485 * 179.97438 * 12 11 10 31 31 H 1.07993 * 119.95645 * 180.02562 * 13 12 11 32 32 H 0.97001 * 119.99920 * 0.02562 * 17 15 14 33 33 H 1.09005 * 109.47148 * 299.99986 * 18 17 15 34 34 H 1.09000 * 109.47140 * 59.99380 * 18 17 15 35 35 H 1.08993 * 109.47350 * 303.02079 * 21 19 18 36 36 H 1.09000 * 109.47069 * 63.02645 * 21 19 18 37 37 H 0.96701 * 113.99921 * 179.97438 * 22 21 19 38 38 H 1.08997 * 109.46827 * 185.23144 * 23 19 18 39 39 H 1.08999 * 109.46524 * 305.22530 * 23 19 18 40 40 H 1.08998 * 115.55108 * 28.24784 * 24 23 19 41 41 H 1.08998 * 117.49666 * 0.02562 * 25 24 23 42 42 H 1.08992 * 117.49772 * 145.02429 * 25 24 23 43 43 H 1.08995 * 117.49416 * 214.98177 * 26 24 23 44 44 H 1.08998 * 117.49432 * 359.97256 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 1.2753 2.7464 0.0006 5 1 3.0941 1.6963 1.2124 6 1 3.0940 1.6964 -1.2125 7 6 2.0076 -1.2148 -0.0005 8 1 3.0279 -1.2491 -0.3530 9 6 1.3810 -2.3902 0.4586 10 6 0.4228 -2.3292 1.4872 11 6 -0.1831 -3.4829 1.9289 12 6 0.1428 -4.7107 1.3688 13 6 1.0808 -4.7976 0.3573 14 6 1.7064 -3.6471 -0.1153 15 6 2.7030 -3.7342 -1.1983 16 8 3.1776 -2.7193 -1.6710 17 7 3.0881 -4.9387 -1.6645 18 6 4.0779 -5.0253 -2.7409 19 6 4.3352 -6.4949 -3.0803 20 1 4.6274 -7.0305 -2.1771 21 6 3.0598 -7.1170 -3.6522 22 8 3.2790 -8.5066 -3.9035 23 6 5.4578 -6.5903 -4.1155 24 6 6.7646 -6.0877 -3.4984 25 6 7.4139 -4.8532 -4.1272 26 6 8.0408 -6.2349 -4.3296 27 1 -0.4850 -0.8371 -0.0711 28 1 0.1639 -1.3786 1.9296 29 1 -0.9180 -3.4330 2.7188 30 1 -0.3415 -5.6070 1.7270 31 1 1.3252 -5.7587 -0.0704 32 1 2.7092 -5.7483 -1.2877 33 1 3.7005 -4.5096 -3.6240 34 1 5.0083 -4.5584 -2.4175 35 1 2.2463 -7.0012 -2.9361 36 1 2.7976 -6.6162 -4.5842 37 1 2.5102 -8.9664 -4.2676 38 1 5.5782 -7.6280 -4.4262 39 1 5.2061 -5.9785 -4.9817 40 1 6.8508 -6.2067 -2.4184 41 1 6.9098 -4.3988 -4.9802 42 1 7.9275 -4.1603 -3.4609 43 1 8.9665 -6.4504 -3.7962 44 1 7.9493 -6.6902 -5.3157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601674109.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:53 Heat of formation + Delta-G solvation = -83.543008 kcal Electronic energy + Delta-G solvation = -24510.366169 eV Core-core repulsion = 21005.361371 eV Total energy + Delta-G solvation = -3505.004798 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91935 -39.53317 -38.61415 -37.67367 -36.18814 -35.68068 -33.47557 -31.74423 -31.15492 -27.97326 -27.28426 -26.46239 -23.98745 -23.20308 -22.77552 -21.85141 -21.47675 -20.93643 -19.94158 -18.58213 -17.84187 -17.08020 -16.54212 -16.52744 -16.46213 -15.96137 -15.78175 -15.57377 -15.36880 -15.10606 -14.60074 -14.45478 -14.20146 -13.87643 -13.75758 -13.43699 -12.99916 -12.88419 -12.69665 -12.56816 -12.49544 -12.40749 -12.18082 -12.02367 -11.94252 -11.77537 -11.48795 -11.10725 -10.94182 -10.90538 -10.69317 -10.35592 -9.99736 -9.60305 -9.51360 -9.12838 -6.46131 0.41133 0.91285 1.46216 1.61692 1.76333 2.25629 2.30060 2.41733 2.72372 2.91069 3.21867 3.56834 3.59485 3.82011 4.01622 4.06603 4.13005 4.20331 4.25447 4.30384 4.44555 4.48267 4.55721 4.57845 4.72884 4.74573 4.79389 4.82446 4.88304 4.97394 5.06945 5.10488 5.15575 5.22277 5.26508 5.40453 5.42700 5.57885 5.65176 5.71568 5.89817 5.96975 6.19829 6.33972 6.68119 6.85199 6.88606 6.91968 7.60795 8.01161 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.004017 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.386040 B = 6968.742029 C = 8546.810460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.000 4.000 3 Si 1.114 2.886 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.082 0.918 9 C 0.097 3.903 10 C -0.229 4.229 11 C -0.071 4.071 12 C -0.248 4.248 13 C -0.040 4.040 14 C -0.287 4.287 15 C 0.557 3.443 16 O -0.579 6.579 17 N -0.728 5.728 18 C 0.136 3.864 19 C -0.084 4.084 20 H 0.085 0.915 21 C 0.081 3.919 22 O -0.582 6.582 23 C -0.068 4.068 24 C -0.162 4.162 25 C -0.193 4.193 26 C -0.168 4.168 27 H 0.283 0.717 28 H 0.089 0.911 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.404 0.596 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.397 0.603 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -14.543 -6.698 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.216 4.216 3 Si 0.931 3.069 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.196 1.196 7 C -0.539 4.539 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.248 4.248 11 C -0.090 4.090 12 C -0.267 4.267 13 C -0.058 4.058 14 C -0.292 4.292 15 C 0.350 3.650 16 O -0.461 6.461 17 N -0.383 5.383 18 C 0.012 3.988 19 C -0.103 4.103 20 H 0.103 0.897 21 C 0.003 3.997 22 O -0.390 6.390 23 C -0.106 4.106 24 C -0.180 4.180 25 C -0.230 4.230 26 C -0.205 4.205 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.142 0.858 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.241 0.759 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.247 0.753 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.789 -12.057 -6.783 15.876 hybrid contribution -0.741 -1.782 0.009 1.930 sum 7.048 -13.839 -6.774 16.943 Atomic orbital electron populations 1.70503 1.08670 1.33062 1.31201 1.28465 0.95784 1.07383 0.90003 0.83052 0.74879 0.70151 0.78824 1.18755 1.18395 1.19595 1.21134 1.02340 0.94015 1.36370 0.90048 1.17870 0.90207 0.92843 0.89824 1.21198 1.04743 0.97780 1.01097 1.21146 0.97173 0.92678 0.97966 1.20792 1.05084 0.97313 1.03470 1.21124 0.93925 0.96020 0.94770 1.19786 1.09282 0.95467 1.04659 1.18430 0.81392 0.82948 0.82191 1.90658 1.57980 1.36288 1.61148 1.45830 1.45199 1.07731 1.39521 1.21234 0.91654 0.96476 0.89445 1.21276 0.95827 0.92897 1.00255 0.89696 1.22128 0.96163 0.82056 0.99306 1.86399 1.43568 1.21627 1.87440 1.21024 0.90879 1.02055 0.96606 1.22382 0.94185 1.02600 0.98823 1.23089 1.04933 0.91500 1.03436 1.23038 0.96525 0.99174 1.01781 0.90515 0.89296 0.85843 0.84644 0.84903 0.75851 0.93120 0.92314 0.93217 0.93070 0.75286 0.89785 0.91664 0.88425 0.88882 0.89461 0.88179 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.35 12.55 21.88 0.27 -45.07 16 2 C 0.00 -0.01 4.98 85.37 0.42 0.42 16 3 Si 1.11 47.13 29.99 68.60 2.06 49.19 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.51 -29.70 7.68 23.42 0.18 -29.52 16 8 H 0.08 5.02 5.90 -2.91 -0.02 5.00 16 9 C 0.10 5.30 5.18 -21.11 -0.11 5.19 16 10 C -0.23 -11.62 7.93 22.72 0.18 -11.44 16 11 C -0.07 -3.00 10.01 22.26 0.22 -2.77 16 12 C -0.25 -9.36 10.03 22.41 0.22 -9.13 16 13 C -0.04 -1.55 9.52 22.51 0.21 -1.34 16 14 C -0.29 -13.91 5.92 -19.70 -0.12 -14.03 16 15 C 0.56 26.01 7.72 86.67 0.67 26.68 16 16 O -0.58 -31.95 13.56 -4.06 -0.06 -32.00 16 17 N -0.73 -24.64 5.20 -466.37 -2.43 -27.06 16 18 C 0.14 3.97 4.96 86.38 0.43 4.40 16 19 C -0.08 -1.79 2.09 -10.79 -0.02 -1.82 16 20 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 21 C 0.08 1.53 6.35 71.98 0.46 1.99 16 22 O -0.58 -9.84 13.02 -148.98 -1.94 -11.78 16 23 C -0.07 -1.32 4.91 30.60 0.15 -1.17 16 24 C -0.16 -3.26 4.66 -10.79 -0.05 -3.31 16 25 C -0.19 -3.97 10.18 30.62 0.31 -3.66 16 26 C -0.17 -2.88 10.25 30.62 0.31 -2.56 16 27 H 0.28 16.30 6.70 -92.71 -0.62 15.68 16 28 H 0.09 4.72 6.91 -2.91 -0.02 4.70 16 29 H 0.12 4.39 8.06 -2.91 -0.02 4.36 16 30 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.13 3.95 6.43 -2.91 -0.02 3.93 16 32 H 0.40 11.21 5.71 -92.71 -0.53 10.68 16 33 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 34 H 0.06 1.90 7.24 -2.39 -0.02 1.88 16 35 H 0.05 0.93 7.11 -2.39 -0.02 0.91 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.40 3.29 9.12 -74.06 -0.68 2.61 16 38 H 0.08 1.58 7.62 -2.39 -0.02 1.56 16 39 H 0.06 1.27 7.87 -2.39 -0.02 1.25 16 40 H 0.10 2.08 8.06 -2.39 -0.02 2.07 16 41 H 0.09 1.91 8.03 -2.39 -0.02 1.89 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -70.30 359.70 1.35 -68.94 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.03 Total: 39.86 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 3.48 Total: -42.07 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -2.15 Total: -72.14 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.00 Total: -43.78 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.06 Total: 49.19 kcal Total: -70.30 1.35 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601674109.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.599 kcal (2) G-P(sol) polarization free energy of solvation -70.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds