Wall clock time and date at job start Tue Mar 31 2020 08:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99921 * 2 1 4 4 H 1.48500 * 109.47428 * 270.00341 * 3 2 1 5 5 H 1.48507 * 109.46862 * 30.00531 * 3 2 1 6 6 H 1.48504 * 109.46891 * 150.00262 * 3 2 1 7 7 C 1.37883 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99754 * 184.93633 * 7 2 1 9 9 C 1.50704 * 119.99674 * 4.93363 * 7 2 1 10 10 H 1.09000 * 109.47087 * 329.58511 * 9 7 2 11 11 C 1.53004 * 109.46509 * 209.58920 * 9 7 2 12 12 C 1.50697 * 109.47058 * 65.00394 * 11 9 7 13 13 O 1.21275 * 120.00224 * 359.97438 * 12 11 9 14 14 N 1.34784 * 119.99404 * 179.97438 * 12 11 9 15 15 C 1.46503 * 119.99505 * 179.97438 * 14 12 11 16 16 H 1.08999 * 110.01656 * 326.38843 * 15 14 12 17 17 C 1.54261 * 110.03495 * 87.83042 * 15 14 12 18 18 C 1.54892 * 104.19395 * 95.67143 * 17 15 14 19 19 C 1.54888 * 102.74781 * 37.94574 * 18 17 15 20 20 C 1.53874 * 110.03032 * 204.99957 * 15 14 12 21 21 H 1.09002 * 110.03011 * 0.02562 * 20 15 14 22 22 O 1.42901 * 110.03208 * 121.37916 * 20 15 14 23 23 C 1.50698 * 109.46933 * 89.58887 * 9 7 2 24 24 C 1.38239 * 120.00019 * 56.77315 * 23 9 7 25 25 C 1.38237 * 119.99531 * 179.76643 * 24 23 9 26 26 C 1.38233 * 120.00220 * 0.49605 * 25 24 23 27 27 C 1.38234 * 119.99999 * 359.75725 * 26 25 24 28 28 C 1.38233 * 119.99866 * 237.03563 * 23 9 7 29 29 H 0.97000 * 119.99968 * 359.97438 * 1 2 3 30 30 H 1.09005 * 109.46687 * 185.00123 * 11 9 7 31 31 H 1.08993 * 109.47151 * 304.99817 * 11 9 7 32 32 H 0.96995 * 120.00310 * 359.97438 * 14 12 11 33 33 H 1.08994 * 110.48758 * 214.35032 * 17 15 14 34 34 H 1.08996 * 110.48756 * 336.99869 * 17 15 14 35 35 H 1.08999 * 110.75983 * 279.63243 * 18 17 15 36 36 H 1.09003 * 110.91501 * 156.33100 * 18 17 15 37 37 H 1.09002 * 110.48750 * 203.38263 * 19 18 17 38 38 H 1.08996 * 110.59996 * 80.78813 * 19 18 17 39 39 H 0.96705 * 113.99833 * 180.02562 * 22 20 15 40 40 H 1.07994 * 119.99900 * 359.97438 * 24 23 9 41 41 H 1.07996 * 119.99355 * 180.22568 * 25 24 23 42 42 H 1.08000 * 119.99712 * 179.72530 * 26 25 24 43 43 H 1.08001 * 119.99670 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99931 * 0.02562 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0815 -1.1958 0.0799 9 6 1.2553 -2.4967 -0.1134 10 1 0.2698 -2.3894 0.3399 11 6 2.0331 -3.5968 0.6118 12 6 2.0799 -3.2903 2.0865 13 8 1.5444 -2.2902 2.5153 14 7 2.7169 -4.1276 2.9289 15 6 2.7629 -3.8293 4.3625 16 1 2.8059 -2.7514 4.5181 17 6 1.5212 -4.4165 5.0646 18 6 2.0038 -5.7839 5.6091 19 6 3.4502 -5.4769 6.0704 20 6 3.9894 -4.5035 5.0020 21 1 4.5506 -5.0522 4.2456 22 8 4.8261 -3.5191 5.6129 23 6 1.1025 -2.8640 -1.5669 24 6 2.2211 -2.9890 -2.3695 25 6 2.0812 -3.3307 -3.7016 26 6 0.8222 -3.5373 -4.2336 27 6 -0.2967 -3.4073 -3.4323 28 6 -0.1565 -3.0707 -2.0989 29 1 -0.4850 0.8400 0.0004 30 1 1.5379 -4.5552 0.4554 31 1 3.0483 -3.6439 0.2180 32 1 3.1449 -4.9277 2.5860 33 1 1.2045 -3.7703 5.8831 34 1 0.7093 -4.5553 4.3507 35 1 2.0015 -6.5364 4.8205 36 1 1.3903 -6.1063 6.4504 37 1 4.0461 -6.3894 6.0905 38 1 3.4472 -5.0026 7.0518 39 1 5.6175 -3.8820 6.0338 40 1 3.2044 -2.8230 -1.9549 41 1 2.9553 -3.4318 -4.3277 42 1 0.7127 -3.7999 -5.2755 43 1 -1.2803 -3.5684 -3.8481 44 1 -1.0307 -2.9685 -1.4729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601877142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:01 Heat of formation + Delta-G solvation = -74.799501 kcal Electronic energy + Delta-G solvation = -24838.661542 eV Core-core repulsion = 21334.035891 eV Total energy + Delta-G solvation = -3504.625651 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68442 -38.49976 -37.75624 -35.27374 -33.94138 -32.95766 -31.38874 -29.99117 -29.06682 -27.87248 -27.23888 -25.25434 -22.77242 -21.62149 -21.18091 -20.49894 -19.78967 -19.18548 -17.56606 -16.67771 -16.30666 -15.97103 -15.43923 -15.05811 -14.62450 -14.37029 -14.16315 -13.96858 -13.80560 -13.74022 -12.93319 -12.70495 -12.53803 -12.36375 -12.24114 -11.90550 -11.85703 -11.57521 -11.27076 -11.16918 -10.83880 -10.79594 -10.71377 -10.63496 -10.52830 -10.23955 -10.11860 -10.00116 -9.39419 -9.06779 -8.77205 -8.52689 -8.27744 -8.02828 -7.59682 -5.88203 -3.87176 2.30544 2.36259 3.41164 3.47059 3.50442 3.56050 3.62027 4.20401 4.44990 4.56209 4.62350 4.76999 4.85565 5.15289 5.37949 5.43881 5.44873 5.52602 5.63060 5.67570 5.70383 5.74989 5.77053 5.85885 5.86777 6.12884 6.13300 6.20596 6.24396 6.27514 6.33204 6.43195 6.56344 6.83272 6.93416 7.02463 7.06685 7.32722 7.47680 7.54155 7.56246 7.92872 7.97154 8.08461 8.15901 8.43249 9.11712 9.16567 9.73760 11.21927 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.004351 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.262285 B = 6433.754614 C = 7603.579668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.076 3.924 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.490 4.490 8 H 0.050 0.950 9 C 0.079 3.921 10 H 0.073 0.927 11 C -0.121 4.121 12 C 0.512 3.488 13 O -0.490 6.490 14 N -0.743 5.743 15 C 0.147 3.853 16 H 0.100 0.900 17 C -0.130 4.130 18 C -0.122 4.122 19 C -0.157 4.157 20 C 0.094 3.906 21 H 0.062 0.938 22 O -0.560 6.560 23 C -0.022 4.022 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.258 0.742 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.390 0.610 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.376 0.624 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -14.401 6.133 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.060 3.940 10 H 0.091 0.909 11 C -0.161 4.161 12 C 0.299 3.701 13 O -0.360 6.360 14 N -0.399 5.399 15 C 0.042 3.958 16 H 0.118 0.882 17 C -0.169 4.169 18 C -0.160 4.160 19 C -0.195 4.195 20 C 0.035 3.965 21 H 0.080 0.920 22 O -0.365 6.365 23 C -0.023 4.023 24 C -0.133 4.133 25 C -0.151 4.151 26 C -0.174 4.174 27 C -0.147 4.147 28 C -0.137 4.137 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.223 0.777 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.222 0.778 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.968 -13.070 6.219 15.303 hybrid contribution 1.183 0.266 -0.081 1.215 sum 6.151 -12.804 6.138 15.474 Atomic orbital electron populations 1.69902 1.05872 1.26296 1.49736 1.24812 0.94669 0.98827 0.94352 0.86710 0.80110 0.84153 0.77694 1.20913 1.21349 1.20031 1.20677 0.92351 0.89648 1.50067 0.93174 1.17836 0.98801 0.91473 0.85931 0.90916 1.21769 1.02426 1.00671 0.91270 1.20908 0.77830 0.82617 0.88774 1.90773 1.42414 1.25015 1.77809 1.46271 1.59736 1.27528 1.06390 1.21192 0.91944 1.01794 0.80900 0.88179 1.22744 0.97882 0.95954 1.00340 1.22442 0.95250 0.97726 1.00552 1.23105 0.97450 0.99212 0.99690 1.22721 0.91434 0.88531 0.93823 0.92011 1.86612 1.38184 1.35855 1.75802 1.20769 0.91716 0.90480 0.99297 1.20957 0.99030 1.00102 0.93172 1.20977 0.96530 1.01850 0.95707 1.20794 0.93122 1.04773 0.98704 1.20985 0.97565 1.01564 0.94558 1.21101 0.97743 1.00100 0.94794 0.93195 0.91699 0.90596 0.77723 0.90840 0.90565 0.91344 0.91384 0.91409 0.90425 0.77767 0.86867 0.87684 0.87825 0.87654 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.29 12.85 55.43 0.71 -25.57 16 2 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 3 Si 0.88 22.64 29.54 -169.99 -5.02 17.62 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.49 -13.37 6.38 -34.44 -0.22 -13.59 16 8 H 0.05 1.37 7.82 -52.49 -0.41 0.96 16 9 C 0.08 1.89 1.69 -92.92 -0.16 1.74 16 10 H 0.07 2.02 6.95 -51.93 -0.36 1.65 16 11 C -0.12 -2.35 4.94 -27.88 -0.14 -2.49 16 12 C 0.51 10.32 7.57 -10.98 -0.08 10.24 16 13 O -0.49 -12.48 14.64 5.56 0.08 -12.40 16 14 N -0.74 -11.24 5.03 -52.72 -0.27 -11.50 16 15 C 0.15 2.15 3.06 -66.81 -0.20 1.95 16 16 H 0.10 1.87 7.38 -51.93 -0.38 1.48 16 17 C -0.13 -1.68 6.54 -25.07 -0.16 -1.84 16 18 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 19 C -0.16 -1.36 6.56 -25.07 -0.16 -1.52 16 20 C 0.09 1.04 4.03 -25.61 -0.10 0.94 16 21 H 0.06 0.60 7.62 -51.93 -0.40 0.21 16 22 O -0.56 -6.67 13.22 -35.23 -0.47 -7.13 16 23 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16 24 C -0.11 -2.32 8.86 -39.58 -0.35 -2.67 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 28 C -0.12 -2.53 9.67 -39.58 -0.38 -2.92 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.36 7.76 -51.93 -0.40 0.96 16 32 H 0.39 4.56 8.32 -40.82 -0.34 4.22 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 39 H 0.38 2.57 9.11 45.56 0.42 2.98 16 40 H 0.11 2.21 7.75 -52.49 -0.41 1.81 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 42 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 44 H 0.11 2.45 7.95 -52.48 -0.42 2.03 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -34.00 363.13 -9.47 -43.47 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -6.06 Total: 9.13 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -3.93 Total: -19.08 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.45 Total: -37.08 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.38 Total: -19.53 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.00 -9.47 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601877142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.334 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds