Wall clock time and date at job start Tue Mar 31 2020 08:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 119.99750 * 2 1 4 4 H 1.48503 * 109.46997 * 239.99388 * 3 2 1 5 5 H 1.48494 * 109.47407 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47256 * 119.99718 * 3 2 1 7 7 C 1.37875 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00366 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47577 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47520 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47411 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00164 * 180.27222 * 12 11 10 14 14 O 1.21585 * 119.99680 * 359.72856 * 13 12 11 15 15 C 1.47534 * 119.99853 * 179.72000 * 13 12 11 16 16 C 1.39709 * 120.19231 * 0.02562 * 15 13 12 17 17 C 1.37789 * 119.90462 * 179.97438 * 16 15 13 18 18 C 1.38546 * 120.30067 * 0.02562 * 17 16 15 19 19 C 1.38048 * 120.39456 * 359.97438 * 18 17 16 20 20 C 1.38710 * 120.08133 * 359.73947 * 19 18 17 21 21 O 1.35655 * 120.15233 * 180.28150 * 20 19 18 22 22 C 1.42903 * 116.99752 * 6.05851 * 21 20 19 23 23 C 1.53784 * 113.61394 * 255.34616 * 22 21 20 24 24 C 1.53781 * 87.08285 * 220.02082 * 23 22 21 25 25 C 1.53781 * 87.08074 * 25.42953 * 24 23 22 26 26 H 0.96994 * 120.00346 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46428 * 60.00124 * 9 7 2 28 28 H 1.09005 * 109.47041 * 300.00720 * 9 7 2 29 29 H 1.09005 * 109.46719 * 60.00255 * 10 9 7 30 30 H 1.09006 * 109.47024 * 300.00606 * 10 9 7 31 31 H 1.08999 * 109.46868 * 59.99569 * 11 10 9 32 32 H 1.09005 * 109.46731 * 300.00486 * 11 10 9 33 33 H 0.97000 * 119.99742 * 359.97438 * 12 11 10 34 34 H 1.08000 * 120.04734 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.84634 * 179.97438 * 17 16 15 36 36 H 1.08004 * 119.80223 * 179.97438 * 18 17 16 37 37 H 1.08000 * 119.95978 * 180.02562 * 19 18 17 38 38 H 1.08997 * 112.85136 * 26.65204 * 22 21 20 39 39 H 1.09006 * 113.61102 * 334.56790 * 23 22 21 40 40 H 1.08996 * 113.61896 * 105.46944 * 23 22 21 41 41 H 1.09003 * 113.61207 * 270.88238 * 24 23 22 42 42 H 1.08998 * 113.61684 * 139.97913 * 24 23 22 43 43 H 1.09002 * 113.61531 * 220.02126 * 25 24 23 44 44 H 1.09006 * 113.69231 * 89.13026 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4804 -4.9872 0.0033 12 7 2.4324 -6.1006 0.0049 13 6 1.9831 -7.3713 0.0001 14 8 0.7878 -7.5935 -0.0006 15 6 2.9419 -8.4926 -0.0045 16 6 4.3163 -8.2419 -0.0034 17 6 5.2065 -9.2936 -0.0072 18 6 4.7451 -10.5999 -0.0127 19 6 3.3897 -10.8619 -0.0139 20 6 2.4793 -9.8154 -0.0041 21 8 1.1471 -10.0713 0.0005 22 6 0.7494 -11.4378 0.1293 23 6 0.2566 -12.0626 -1.1867 24 6 -0.8323 -12.7615 -0.3557 25 6 -0.6836 -11.6151 0.6585 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8720 -3.6036 0.8928 30 1 2.8721 -3.6051 -0.8873 31 1 0.8540 -5.0454 -0.8868 32 1 0.8534 -5.0443 0.8931 33 1 3.3860 -5.9234 0.0051 34 1 4.6805 -7.2251 0.0005 35 1 6.2688 -9.0987 -0.0067 36 1 5.4500 -11.4182 -0.0161 37 1 3.0377 -11.8830 -0.0177 38 1 1.4867 -12.0456 0.6535 39 1 -0.1358 -11.3338 -1.8960 40 1 0.9711 -12.7512 -1.6376 41 1 -0.5275 -13.7324 0.0351 42 1 -1.8057 -12.7879 -0.8453 43 1 -0.7280 -11.9425 1.6972 44 1 -1.3327 -10.7634 0.4550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609814745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:53 Heat of formation + Delta-G solvation = -39.568697 kcal Electronic energy + Delta-G solvation = -23717.985793 eV Core-core repulsion = 20214.887864 eV Total energy + Delta-G solvation = -3503.097929 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83363 -39.39538 -38.14918 -36.46782 -35.25790 -33.30026 -31.88332 -30.67283 -30.11810 -26.78861 -26.01505 -25.69576 -24.15424 -22.86761 -22.11784 -20.70126 -20.29442 -19.64890 -18.72921 -17.27489 -16.53085 -16.25798 -15.89358 -15.39692 -15.25908 -15.10041 -14.89177 -14.60341 -14.44968 -14.16086 -13.70962 -13.29546 -12.82770 -12.75035 -12.55183 -12.24479 -12.03413 -11.80662 -11.76971 -11.65415 -11.61041 -11.29645 -10.86293 -10.74524 -10.67624 -10.60265 -10.55206 -9.82280 -9.76137 -9.31478 -9.29082 -9.09549 -8.68237 -8.36492 -8.34563 -5.99370 -4.02486 0.71685 1.16704 2.95969 3.03300 3.33599 3.38177 3.39663 3.46647 3.78672 4.17888 4.21400 4.39163 4.44840 4.46211 4.52902 4.59562 4.78749 4.87229 5.08985 5.14032 5.26051 5.36163 5.36403 5.44988 5.52948 5.53946 5.62432 5.71514 5.79541 5.84110 5.92218 6.01885 6.04621 6.18066 6.22139 6.46628 6.57095 6.65142 6.89890 7.05029 7.28118 7.66288 7.79650 7.82668 7.99612 8.40381 8.54139 9.04052 9.61426 11.11947 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.002511 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.387558 B =11148.371747 C =12346.238165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.119 3.881 12 N -0.725 5.725 13 C 0.552 3.448 14 O -0.523 6.523 15 C -0.169 4.169 16 C -0.048 4.048 17 C -0.169 4.169 18 C -0.057 4.057 19 C -0.224 4.224 20 C 0.186 3.814 21 O -0.263 6.263 22 C 0.044 3.956 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.129 4.129 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.614 -28.189 -0.021 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.377 5.377 13 C 0.339 3.661 14 O -0.400 6.400 15 C -0.173 4.173 16 C -0.066 4.066 17 C -0.187 4.187 18 C -0.075 4.075 19 C -0.242 4.242 20 C 0.137 3.863 21 O -0.174 6.174 22 C -0.012 4.012 23 C -0.193 4.193 24 C -0.178 4.178 25 C -0.166 4.166 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.229 0.771 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.372 -28.069 -0.033 28.784 hybrid contribution 1.144 0.854 0.005 1.428 sum 7.516 -27.215 -0.028 28.234 Atomic orbital electron populations 1.69958 1.06056 1.26784 1.50522 1.25033 0.94859 0.99285 0.95309 0.86639 0.79553 0.83108 0.78572 1.20254 1.21287 1.20250 1.21173 0.92950 0.90970 1.50980 0.92702 1.19026 0.93859 0.90815 0.97669 1.21890 0.99777 0.93388 1.00825 1.21624 0.91832 0.84926 1.02008 1.46111 1.10629 1.05731 1.75266 1.17988 0.88118 0.82636 0.77405 1.90812 1.15781 1.84511 1.48857 1.19525 0.93881 0.91480 1.12440 1.21242 0.91052 0.99887 0.94465 1.20981 0.99966 0.92334 1.05459 1.21091 0.94677 0.97041 0.94716 1.21228 0.93850 0.98517 1.10635 1.19062 0.83635 0.92413 0.91144 1.86501 1.18716 1.27006 1.85156 1.24324 0.96873 0.81715 0.98300 1.23505 0.98755 0.99888 0.97129 1.22658 0.99824 0.97490 0.97822 1.23164 0.94801 0.99181 0.99496 0.92878 0.96257 0.96266 0.92741 0.92752 0.91762 0.91760 0.77061 0.84833 0.85285 0.85492 0.84950 0.88440 0.88687 0.91022 0.89856 0.90295 0.90603 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.12 2.20 5.67 -4.05 -0.02 2.18 16 12 N -0.73 -11.38 5.51 -61.35 -0.34 -11.71 16 13 C 0.55 9.39 7.76 -12.47 -0.10 9.29 16 14 O -0.52 -10.85 15.16 -16.59 -0.25 -11.10 16 15 C -0.17 -2.33 5.89 -104.84 -0.62 -2.95 16 16 C -0.05 -0.50 9.54 -39.20 -0.37 -0.87 16 17 C -0.17 -1.45 10.02 -39.63 -0.40 -1.85 16 18 C -0.06 -0.47 10.03 -39.54 -0.40 -0.86 16 19 C -0.22 -2.16 9.00 -39.48 -0.36 -2.51 16 20 C 0.19 2.43 6.69 -38.69 -0.26 2.17 16 21 O -0.26 -3.72 8.22 -40.54 -0.33 -4.06 16 22 C 0.04 0.43 3.63 -25.92 -0.09 0.34 16 23 C -0.16 -1.28 7.91 -25.92 -0.21 -1.49 16 24 C -0.14 -0.96 8.08 -25.92 -0.21 -1.17 16 25 C -0.13 -1.15 7.91 -25.92 -0.21 -1.35 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.39 4.97 6.50 -40.82 -0.27 4.70 16 34 H 0.13 1.12 6.40 -52.49 -0.34 0.79 16 35 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.97 5.95 -52.49 -0.31 0.66 16 38 H 0.10 0.75 6.05 -51.93 -0.31 0.44 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -34.35 364.76 -10.32 -44.67 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.69 Total: 1.14 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -3.92 Total: -14.69 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.40 Total: -38.10 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.58 Total: -15.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.35 -10.32 -44.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609814745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.101 kcal (2) G-P(sol) polarization free energy of solvation -34.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds