Wall clock time and date at job start Tue Mar 31 2020 08:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86804 * 119.99582 * 2 1 4 4 H 1.48499 * 109.46778 * 239.99683 * 3 2 1 5 5 H 1.48498 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47032 * 120.00383 * 3 2 1 7 7 C 1.39883 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 194.50861 * 7 2 1 9 9 C 1.41214 * 120.00401 * 14.50568 * 7 2 1 10 10 C 1.40838 * 120.17744 * 27.27377 * 9 7 2 11 11 C 1.36437 * 119.81154 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18518 * 0.02562 * 11 10 9 13 13 O 1.35681 * 119.81542 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99575 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46776 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47247 * 54.99818 * 15 14 13 17 17 O 1.42898 * 109.46992 * 294.99726 * 15 14 13 18 18 C 1.53003 * 109.47163 * 175.00057 * 15 14 13 19 19 N 1.46894 * 109.47274 * 178.68627 * 18 15 14 20 20 C 1.46848 * 111.00282 * 175.42157 * 19 18 15 21 21 C 1.50147 * 110.26866 * 287.53844 * 20 19 18 22 22 C 1.29820 * 123.28714 * 342.94574 * 21 20 19 23 23 C 1.50300 * 122.89564 * 0.39765 * 22 21 20 24 24 C 1.47231 * 110.98300 * 52.48282 * 19 18 15 25 25 C 1.39311 * 120.36868 * 0.24818 * 12 11 10 26 26 C 1.36444 * 120.17873 * 359.48978 * 25 12 11 27 27 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.09233 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.90434 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47383 * 60.00137 * 14 13 12 31 31 H 1.08995 * 109.47272 * 299.99769 * 14 13 12 32 32 H 0.96702 * 114.00329 * 304.70631 * 17 15 14 33 33 H 1.09002 * 109.47342 * 58.68542 * 18 15 14 34 34 H 1.09006 * 109.46866 * 298.68589 * 18 15 14 35 35 H 1.08994 * 109.33793 * 167.29263 * 20 19 18 36 36 H 1.08997 * 109.33562 * 47.78159 * 20 19 18 37 37 H 1.08008 * 118.35322 * 162.92646 * 21 20 19 38 38 H 1.08007 * 118.55036 * 180.37898 * 22 21 20 39 39 H 1.08998 * 109.43161 * 103.55332 * 23 22 21 40 40 H 1.09001 * 109.43342 * 223.45631 * 23 22 21 41 41 H 1.08991 * 109.63767 * 294.89835 * 24 19 18 42 42 H 1.09005 * 109.80969 * 174.38893 * 24 19 18 43 43 H 1.07994 * 119.91284 * 179.72538 * 25 12 11 44 44 H 1.08000 * 120.08882 * 180.25195 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6965 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0624 -1.2262 0.2349 9 6 1.3361 -2.4151 -0.3052 10 6 0.1978 -2.3993 -1.1345 11 6 -0.4462 -3.5666 -1.4246 12 6 0.0188 -4.7716 -0.9027 13 8 -0.6277 -5.9279 -1.1957 14 6 -0.0989 -7.1284 -0.6289 15 6 -0.9540 -8.3190 -1.0672 16 1 -1.0144 -8.3420 -2.1553 17 8 -2.2675 -8.1892 -0.5198 18 6 -0.3178 -9.6164 -0.5642 19 7 -1.1552 -10.7572 -0.9580 20 6 -0.5212 -12.0286 -0.5867 21 6 0.6494 -12.3078 -1.4845 22 6 0.8345 -11.7085 -2.6212 23 6 -0.1035 -10.6622 -3.1545 24 6 -1.4356 -10.7314 -2.4032 25 6 1.1406 -4.7953 -0.0771 26 6 1.7993 -3.6375 0.2185 27 1 -0.4850 0.8400 0.0004 28 1 -0.1647 -1.4658 -1.5389 29 1 -1.3195 -3.5562 -2.0600 30 1 -0.1116 -7.0531 0.4584 31 1 0.9260 -7.2710 -0.9713 32 1 -2.2849 -8.0899 0.4419 33 1 -0.2360 -9.5837 0.5222 34 1 0.6752 -9.7270 -1.0002 35 1 -1.2481 -12.8353 -0.6800 36 1 -0.1783 -11.9727 0.4465 37 1 1.3740 -13.0440 -1.1688 38 1 1.7008 -11.9733 -3.2093 39 1 0.3388 -9.6754 -3.0181 40 1 -0.2773 -10.8381 -4.2161 41 1 -2.0379 -9.8555 -2.6439 42 1 -1.9722 -11.6353 -2.6916 43 1 1.4922 -5.7330 0.3271 44 1 2.6712 -3.6581 0.8555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611517572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:03 Heat of formation + Delta-G solvation = -44.608962 kcal Electronic energy + Delta-G solvation = -24196.157905 eV Core-core repulsion = 20692.841414 eV Total energy + Delta-G solvation = -3503.316491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19184 -38.83977 -37.10505 -35.93151 -33.29089 -33.00179 -31.30078 -30.52743 -29.58102 -28.97068 -26.56368 -24.70621 -23.89329 -23.32308 -21.39799 -20.61282 -20.58530 -18.25710 -17.35400 -17.05274 -16.77060 -16.43827 -16.11640 -15.37234 -15.13297 -14.75402 -14.47428 -14.13624 -13.93294 -13.67066 -13.60556 -13.05713 -12.84811 -12.68592 -12.44977 -12.23837 -12.14708 -11.80547 -11.77613 -11.59629 -11.37941 -11.12886 -11.00845 -10.93639 -10.71460 -10.53643 -9.96994 -9.89938 -9.80970 -9.35077 -9.32347 -9.05065 -8.47456 -7.65017 -6.99942 -6.69230 -4.26635 1.89697 2.79216 2.94242 3.08596 3.11164 3.21585 3.47684 3.96248 4.06215 4.46667 4.58624 4.64166 4.68815 4.75648 4.89153 4.89378 5.00919 5.16137 5.21910 5.30486 5.34248 5.45998 5.46883 5.56283 5.59766 5.65961 5.73640 5.82448 6.03136 6.05363 6.21400 6.22566 6.51455 6.71093 6.77147 6.84128 6.97271 7.11134 7.19126 7.45631 7.55799 7.77044 7.78519 8.00642 8.20566 8.44618 8.65184 8.90759 8.98409 10.25861 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.002470 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.959398 B =11331.864941 C =11562.123400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.088 3.912 10 C -0.129 4.129 11 C -0.120 4.120 12 C -0.006 4.006 13 O -0.317 6.317 14 C 0.037 3.963 15 C 0.112 3.888 16 H 0.105 0.895 17 O -0.540 6.540 18 C 0.021 3.979 19 N -0.514 5.514 20 C 0.078 3.922 21 C -0.195 4.195 22 C -0.150 4.150 23 C -0.136 4.136 24 C 0.047 3.953 25 C -0.170 4.170 26 C -0.196 4.196 27 H 0.280 0.720 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.373 0.627 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -19.414 -2.360 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.086 3.914 10 C -0.148 4.148 11 C -0.139 4.139 12 C -0.049 4.049 13 O -0.233 6.233 14 C -0.040 4.040 15 C 0.052 3.948 16 H 0.123 0.877 17 O -0.345 6.345 18 C -0.107 4.107 19 N -0.236 5.236 20 C -0.050 4.050 21 C -0.214 4.214 22 C -0.168 4.168 23 C -0.175 4.175 24 C -0.081 4.081 25 C -0.189 4.189 26 C -0.216 4.216 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.471 -19.276 -2.816 19.536 hybrid contribution 1.858 0.600 0.388 1.991 sum 0.387 -18.675 -2.429 18.837 Atomic orbital electron populations 1.69805 1.07402 1.29151 1.36661 1.25860 0.94780 1.01128 0.92482 0.86359 0.80036 0.80394 0.79827 1.18954 1.20393 1.19147 1.19413 0.96845 0.90845 1.42470 0.90672 1.17594 0.91992 0.92142 0.89681 1.20994 0.98212 0.96067 0.99564 1.19851 1.00767 0.90435 1.02879 1.18636 0.96449 0.84817 1.05029 1.85887 1.53908 1.12834 1.70657 1.23126 0.97326 0.85547 0.98000 1.21947 0.83185 0.90063 0.99604 0.87742 1.86599 1.26199 1.95626 1.26031 1.22775 0.95584 0.90992 1.01374 1.62673 1.43785 1.01234 1.15866 1.21134 0.93345 0.92277 0.98259 1.22906 1.00170 1.01269 0.97082 1.22190 0.99792 0.97969 0.96894 1.21193 0.96672 0.98568 1.01039 1.22341 0.95730 1.03562 0.86478 1.20398 0.97888 0.97811 1.02781 1.20588 1.02842 0.92828 1.05304 0.90903 0.85644 0.88395 0.92795 0.92629 0.78055 0.90172 0.93123 0.89407 0.89930 0.87578 0.87768 0.90287 0.90264 0.89173 0.90548 0.88966 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.99 10.94 55.54 0.61 -20.38 16 2 C 0.07 1.87 5.19 -17.34 -0.09 1.78 16 3 Si 0.91 18.82 29.58 -169.99 -5.03 13.79 16 4 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.40 9.04 -37.84 -0.34 -12.74 16 8 H 0.08 1.92 7.89 -52.49 -0.41 1.50 16 9 C 0.09 2.36 5.55 -106.81 -0.59 1.77 16 10 C -0.13 -3.39 8.62 -39.25 -0.34 -3.73 16 11 C -0.12 -2.95 9.92 -39.83 -0.40 -3.34 16 12 C -0.01 -0.14 6.71 -38.79 -0.26 -0.40 16 13 O -0.32 -6.49 10.09 -23.60 -0.24 -6.73 16 14 C 0.04 0.57 4.33 37.16 0.16 0.73 16 15 C 0.11 1.42 2.51 -26.73 -0.07 1.35 16 16 H 0.10 1.39 5.64 -51.93 -0.29 1.09 16 17 O -0.54 -7.49 13.15 -40.09 -0.53 -8.02 16 18 C 0.02 0.22 4.07 -3.83 -0.02 0.20 16 19 N -0.51 -5.15 4.98 -236.12 -1.18 -6.32 16 20 C 0.08 0.65 5.95 -5.27 -0.03 0.62 16 21 C -0.19 -1.60 9.40 -35.96 -0.34 -1.94 16 22 C -0.15 -1.30 9.28 -35.89 -0.33 -1.64 16 23 C -0.14 -1.22 5.42 -28.03 -0.15 -1.38 16 24 C 0.05 0.45 5.43 -3.59 -0.02 0.43 16 25 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 26 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 27 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 28 H 0.13 3.37 6.24 -52.49 -0.33 3.04 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.05 0.79 7.63 -51.93 -0.40 0.39 16 31 H 0.06 0.82 7.66 -51.93 -0.40 0.42 16 32 H 0.37 4.11 9.03 45.56 0.41 4.52 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.53 5.94 -51.93 -0.31 0.22 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.62 8.04 -51.93 -0.42 0.21 16 37 H 0.11 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.10 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.08 0.78 6.17 -51.93 -0.32 0.46 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.98 6.57 -51.93 -0.34 0.63 16 42 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 43 H 0.09 1.79 6.27 -52.49 -0.33 1.46 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -29.45 350.31 -10.28 -39.74 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.65 Total: 10.33 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -3.55 Total: -27.68 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: -0.57 Total: -26.70 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.77 Total: -14.75 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.45 -10.28 -39.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611517572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.871 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds