Wall clock time and date at job start Tue Mar 31 2020 08:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86804 * 119.99582 * 2 1 4 4 H 1.48499 * 109.46778 * 239.99683 * 3 2 1 5 5 H 1.48498 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47032 * 120.00383 * 3 2 1 7 7 C 1.39883 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00108 * 194.50861 * 7 2 1 9 9 C 1.41214 * 120.00401 * 14.50568 * 7 2 1 10 10 C 1.40838 * 120.17744 * 27.27377 * 9 7 2 11 11 C 1.36437 * 119.81154 * 180.02562 * 10 9 7 12 12 C 1.39305 * 120.18518 * 0.02562 * 11 10 9 13 13 O 1.35681 * 119.81542 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99575 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.46776 * 179.97438 * 14 13 12 16 16 H 1.09003 * 109.47247 * 54.99818 * 15 14 13 17 17 O 1.42898 * 109.46992 * 294.99726 * 15 14 13 18 18 C 1.53003 * 109.47163 * 175.00057 * 15 14 13 19 19 N 1.46894 * 109.47274 * 178.68627 * 18 15 14 20 20 C 1.46848 * 111.00282 * 175.42157 * 19 18 15 21 21 C 1.50147 * 110.26866 * 287.53844 * 20 19 18 22 22 C 1.29820 * 123.28714 * 342.94574 * 21 20 19 23 23 C 1.50300 * 122.89564 * 0.39765 * 22 21 20 24 24 C 1.47231 * 110.98300 * 52.48282 * 19 18 15 25 25 C 1.39311 * 120.36868 * 0.24818 * 12 11 10 26 26 C 1.36444 * 120.17873 * 359.48978 * 25 12 11 27 27 H 0.96999 * 120.00209 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.09233 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.90434 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47383 * 60.00137 * 14 13 12 31 31 H 1.08995 * 109.47272 * 299.99769 * 14 13 12 32 32 H 0.96702 * 114.00329 * 304.70631 * 17 15 14 33 33 H 1.09002 * 109.47342 * 58.68542 * 18 15 14 34 34 H 1.09006 * 109.46866 * 298.68589 * 18 15 14 35 35 H 1.08994 * 109.33793 * 167.29263 * 20 19 18 36 36 H 1.08997 * 109.33562 * 47.78159 * 20 19 18 37 37 H 1.08008 * 118.35322 * 162.92646 * 21 20 19 38 38 H 1.08007 * 118.55036 * 180.37898 * 22 21 20 39 39 H 1.08998 * 109.43161 * 103.55332 * 23 22 21 40 40 H 1.09001 * 109.43342 * 223.45631 * 23 22 21 41 41 H 1.08991 * 109.63767 * 294.89835 * 24 19 18 42 42 H 1.09005 * 109.80969 * 174.38893 * 24 19 18 43 43 H 1.07994 * 119.91284 * 179.72538 * 25 12 11 44 44 H 1.08000 * 120.08882 * 180.25195 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0965 1.6965 1.2124 7 6 2.0083 -1.2114 0.0005 8 1 3.0624 -1.2262 0.2349 9 6 1.3361 -2.4151 -0.3052 10 6 0.1978 -2.3993 -1.1345 11 6 -0.4462 -3.5666 -1.4246 12 6 0.0188 -4.7716 -0.9027 13 8 -0.6277 -5.9279 -1.1957 14 6 -0.0989 -7.1284 -0.6289 15 6 -0.9540 -8.3190 -1.0672 16 1 -1.0144 -8.3420 -2.1553 17 8 -2.2675 -8.1892 -0.5198 18 6 -0.3178 -9.6164 -0.5642 19 7 -1.1552 -10.7572 -0.9580 20 6 -0.5212 -12.0286 -0.5867 21 6 0.6494 -12.3078 -1.4845 22 6 0.8345 -11.7085 -2.6212 23 6 -0.1035 -10.6622 -3.1545 24 6 -1.4356 -10.7314 -2.4032 25 6 1.1406 -4.7953 -0.0771 26 6 1.7993 -3.6375 0.2185 27 1 -0.4850 0.8400 0.0004 28 1 -0.1647 -1.4658 -1.5389 29 1 -1.3195 -3.5562 -2.0600 30 1 -0.1116 -7.0531 0.4584 31 1 0.9260 -7.2710 -0.9713 32 1 -2.2849 -8.0899 0.4419 33 1 -0.2360 -9.5837 0.5222 34 1 0.6752 -9.7270 -1.0002 35 1 -1.2481 -12.8353 -0.6800 36 1 -0.1783 -11.9727 0.4465 37 1 1.3740 -13.0440 -1.1688 38 1 1.7008 -11.9733 -3.2093 39 1 0.3388 -9.6754 -3.0181 40 1 -0.2773 -10.8381 -4.2161 41 1 -2.0379 -9.8555 -2.6439 42 1 -1.9722 -11.6353 -2.6916 43 1 1.4922 -5.7330 0.3271 44 1 2.6712 -3.6581 0.8555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611517572.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:02 Heat of formation + Delta-G solvation = -63.611679 kcal Electronic energy + Delta-G solvation = -24196.981925 eV Core-core repulsion = 20692.841414 eV Total energy + Delta-G solvation = -3504.140511 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07581 -40.38854 -38.52501 -37.36180 -35.16195 -33.76347 -32.12752 -31.83540 -31.17857 -30.73621 -27.69704 -26.46598 -24.58582 -24.39420 -22.83249 -22.39951 -21.87163 -19.26745 -19.12145 -18.46561 -17.78068 -17.35305 -17.19742 -17.02897 -16.30016 -15.88242 -15.74551 -15.58382 -15.21988 -14.84766 -14.65997 -14.38940 -14.06596 -13.93261 -13.71701 -13.56532 -13.47035 -13.26229 -12.98216 -12.78388 -12.65074 -12.50250 -12.41633 -12.30580 -11.86495 -11.71996 -11.59577 -11.56861 -11.17630 -10.94936 -10.88138 -9.98523 -9.57042 -9.21269 -8.89622 -8.57121 -6.24455 0.94907 1.01846 1.26748 1.39976 1.51176 1.54010 2.23403 2.35558 2.74501 3.05282 3.53285 3.69033 3.80285 3.87499 3.94053 4.01229 4.05353 4.17093 4.22050 4.27399 4.33505 4.36911 4.43494 4.56509 4.62509 4.69399 4.80083 4.86122 4.92174 4.97431 5.02240 5.06165 5.11910 5.20949 5.28548 5.56955 5.59054 5.64352 5.86833 5.87182 6.01494 6.05678 6.14009 6.26145 6.56258 6.79476 6.86795 6.95691 7.09011 8.39821 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.036787 B = 0.002470 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.959398 B =11331.864941 C =11562.123400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.076 0.924 9 C 0.055 3.945 10 C -0.148 4.148 11 C -0.136 4.136 12 C 0.004 3.996 13 O -0.330 6.330 14 C 0.030 3.970 15 C 0.122 3.878 16 H 0.096 0.904 17 O -0.558 6.558 18 C 0.032 3.968 19 N -0.524 5.524 20 C 0.076 3.924 21 C -0.192 4.192 22 C -0.163 4.163 23 C -0.134 4.134 24 C 0.048 3.952 25 C -0.166 4.166 26 C -0.205 4.205 27 H 0.286 0.714 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.384 0.616 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -20.938 -1.725 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.053 3.947 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.040 4.040 13 O -0.246 6.246 14 C -0.047 4.047 15 C 0.062 3.938 16 H 0.114 0.886 17 O -0.364 6.364 18 C -0.097 4.097 19 N -0.246 5.246 20 C -0.052 4.052 21 C -0.211 4.211 22 C -0.182 4.182 23 C -0.172 4.172 24 C -0.080 4.080 25 C -0.185 4.185 26 C -0.224 4.224 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.147 0.853 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.649 -20.835 -2.173 20.958 hybrid contribution 1.520 0.863 0.190 1.758 sum 0.871 -19.972 -1.983 20.089 Atomic orbital electron populations 1.69874 1.08896 1.30403 1.37243 1.26733 0.95550 1.04453 0.91452 0.85235 0.78655 0.75709 0.79972 1.18553 1.19424 1.18388 1.19683 0.97147 0.91957 1.44298 0.90561 1.17949 0.92766 0.93400 0.90623 1.20909 0.99061 0.96167 1.00608 1.20013 1.01164 0.90854 1.03406 1.18702 0.96106 0.85473 1.03741 1.85882 1.54158 1.13411 1.71123 1.23499 0.98400 0.84119 0.98665 1.21862 0.82571 0.90145 0.99188 0.88633 1.86574 1.26868 1.95693 1.27256 1.22638 0.95278 0.89802 1.01938 1.62668 1.44115 1.01828 1.15965 1.21229 0.93587 0.91532 0.98833 1.23040 1.00204 1.01174 0.96681 1.22275 1.00167 0.98289 0.97425 1.21144 0.96331 0.98238 1.01516 1.22289 0.95958 1.03106 0.86667 1.20699 0.97134 0.98676 1.01995 1.20841 1.03386 0.92877 1.05312 0.90306 0.87289 0.87524 0.91550 0.91513 0.76704 0.88961 0.92943 0.88600 0.88846 0.86188 0.87067 0.91384 0.89548 0.90800 0.89899 0.85341 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.78 10.94 21.82 0.24 -44.55 16 2 C 0.03 1.60 5.19 85.23 0.44 2.04 16 3 Si 0.98 38.74 29.58 68.60 2.03 40.77 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.50 -27.26 9.04 23.40 0.21 -27.05 16 8 H 0.08 3.96 7.89 -2.91 -0.02 3.94 16 9 C 0.05 3.00 5.55 -21.28 -0.12 2.88 16 10 C -0.15 -8.03 8.62 22.49 0.19 -7.84 16 11 C -0.14 -6.73 9.92 22.11 0.22 -6.51 16 12 C 0.00 0.17 6.71 22.79 0.15 0.32 16 13 O -0.33 -13.09 10.09 -85.35 -0.86 -13.95 16 14 C 0.03 0.84 4.33 71.98 0.31 1.15 16 15 C 0.12 2.91 2.51 30.60 0.08 2.98 16 16 H 0.10 2.46 5.64 -2.39 -0.01 2.45 16 17 O -0.56 -14.69 13.15 -144.34 -1.90 -16.59 16 18 C 0.03 0.58 4.07 86.31 0.35 0.94 16 19 N -0.52 -9.43 4.98 -900.93 -4.48 -13.92 16 20 C 0.08 1.06 5.95 85.39 0.51 1.57 16 21 C -0.19 -2.67 9.40 26.69 0.25 -2.42 16 22 C -0.16 -2.52 9.28 26.74 0.25 -2.27 16 23 C -0.13 -2.23 5.42 29.75 0.16 -2.07 16 24 C 0.05 0.87 5.43 86.27 0.47 1.33 16 25 C -0.17 -7.26 8.96 22.11 0.20 -7.06 16 26 C -0.20 -10.01 9.74 22.48 0.22 -9.79 16 27 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 28 H 0.11 6.15 6.24 -2.91 -0.02 6.14 16 29 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.07 1.75 7.63 -2.39 -0.02 1.73 16 31 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 32 H 0.38 7.81 9.03 -74.06 -0.67 7.14 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 0.96 5.94 -2.38 -0.01 0.95 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.12 8.04 -2.39 -0.02 1.10 16 37 H 0.12 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.11 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.07 1.28 6.17 -2.39 -0.01 1.26 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.57 6.57 -2.39 -0.02 1.55 16 42 H 0.08 1.37 8.09 -2.38 -0.02 1.35 16 43 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 44 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -63.60 350.31 -0.74 -64.34 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.34 Total: 35.69 kcal Atomic # 6 Polarization: -55.69 SS G_CDS: 3.89 Total: -51.80 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -4.25 Total: -58.46 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -2.76 Total: -30.54 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Total: -63.60 -0.74 -64.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611517572.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.726 kcal (2) G-P(sol) polarization free energy of solvation -63.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds