Wall clock time and date at job start Tue Mar 31 2020 08:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 120.00000 * 2 1 4 4 H 1.48495 * 109.47171 * 269.99760 * 3 2 1 5 5 H 1.48503 * 109.46735 * 29.99869 * 3 2 1 6 6 H 1.48496 * 109.47012 * 149.99462 * 3 2 1 7 7 C 1.39950 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99624 * 197.86349 * 7 2 1 9 9 C 1.41390 * 119.99765 * 17.85897 * 7 2 1 10 10 C 1.40714 * 120.24828 * 24.39125 * 9 7 2 11 11 C 1.37617 * 119.74722 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24511 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.74492 * 179.97438 * 12 11 10 14 14 N 1.46900 * 109.46484 * 90.00182 * 13 12 11 15 15 C 1.47904 * 111.00090 * 52.60381 * 14 13 12 16 16 C 1.53997 * 107.05819 * 145.84070 * 15 14 13 17 17 C 1.54595 * 105.13981 * 358.77645 * 16 15 14 18 18 H 1.09001 * 110.72670 * 96.39779 * 17 16 15 19 19 C 1.53005 * 110.72493 * 219.68534 * 17 16 15 20 20 O 1.43746 * 109.63073 * 52.86034 * 19 17 16 21 21 C 1.44785 * 104.81739 * 215.81006 * 20 19 17 22 22 C 1.54910 * 101.72215 * 36.10721 * 21 20 19 23 23 O 1.43370 * 109.62767 * 293.49934 * 19 17 16 24 24 C 1.48536 * 110.99864 * 169.99732 * 14 13 12 25 25 C 1.38632 * 120.50563 * 0.25067 * 12 11 10 26 26 C 1.37625 * 120.24490 * 359.44898 * 25 12 11 27 27 H 0.97006 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.12338 * 359.97438 * 10 9 7 29 29 H 1.07992 * 119.87536 * 179.97438 * 11 10 9 30 30 H 1.08996 * 109.47132 * 330.00711 * 13 12 11 31 31 H 1.08997 * 109.46727 * 209.99939 * 13 12 11 32 32 H 1.08999 * 109.91924 * 26.49204 * 15 14 13 33 33 H 1.08993 * 109.91543 * 265.19408 * 15 14 13 34 34 H 1.08997 * 110.30694 * 239.85684 * 16 15 14 35 35 H 1.09000 * 110.30681 * 117.68840 * 16 15 14 36 36 H 1.08998 * 109.62828 * 173.10614 * 19 17 16 37 37 H 1.08997 * 110.97470 * 277.99701 * 21 20 19 38 38 H 1.08997 * 111.00835 * 154.23293 * 21 20 19 39 39 H 1.08999 * 110.69711 * 206.04254 * 22 21 20 40 40 H 1.08995 * 110.84661 * 82.90144 * 22 21 20 41 41 H 1.09003 * 110.66726 * 81.84458 * 24 14 13 42 42 H 1.09005 * 110.66779 * 318.71756 * 24 14 13 43 43 H 1.08001 * 119.87669 * 179.70364 * 25 12 11 44 44 H 1.07995 * 120.12344 * 180.28007 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4402 0.7001 7 6 2.0080 -1.2120 0.0005 8 1 3.0489 -1.2344 0.2875 9 6 1.3520 -2.4071 -0.3744 10 6 0.2209 -2.3627 -1.2103 11 6 -0.4099 -3.5322 -1.5684 12 6 0.0649 -4.7508 -1.1084 13 6 -0.6349 -6.0246 -1.5072 14 7 -0.0438 -6.5395 -2.7495 15 6 1.4254 -6.6583 -2.6281 16 6 1.8490 -7.8876 -3.4532 17 6 0.5321 -8.4686 -4.0173 18 1 0.3564 -8.1116 -5.0321 19 6 0.5534 -9.9979 -3.9758 20 8 0.8763 -10.4405 -2.6469 21 6 1.6815 -11.6286 -2.8377 22 6 2.4910 -11.2597 -4.1059 23 8 1.5497 -10.4904 -4.8815 24 6 -0.5375 -7.9087 -3.0463 25 6 1.1750 -4.8062 -0.2799 26 6 1.8253 -3.6498 0.0861 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1513 -1.4143 -1.5687 29 1 -1.2784 -3.5004 -2.2094 30 1 -1.6943 -5.8229 -1.6652 31 1 -0.5200 -6.7652 -0.7158 32 1 1.7014 -6.7995 -1.5831 33 1 1.9042 -5.7626 -3.0236 34 1 2.3427 -8.6200 -2.8145 35 1 2.5094 -7.5878 -4.2669 36 1 -0.4246 -10.3856 -4.2611 37 1 1.0533 -12.5013 -3.0158 38 1 2.3426 -11.7934 -1.9869 39 1 2.7919 -12.1577 -4.6456 40 1 3.3618 -10.6568 -3.8485 41 1 -1.5135 -7.8692 -3.5302 42 1 -0.5821 -8.5072 -2.1363 43 1 1.5334 -5.7607 0.0764 44 1 2.6926 -3.6956 0.7279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719107317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:26:42 Heat of formation + Delta-G solvation = -65.512935 kcal Electronic energy + Delta-G solvation = -24617.770731 eV Core-core repulsion = 21113.547775 eV Total energy + Delta-G solvation = -3504.222955 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79844 -38.68012 -37.14678 -35.23139 -34.01057 -32.55445 -30.52224 -29.45801 -29.28178 -28.44668 -26.41801 -24.27570 -23.55019 -23.28138 -21.08519 -20.73141 -20.32058 -19.33440 -17.50083 -17.25213 -16.87485 -16.60793 -15.44709 -15.31631 -14.98926 -14.53306 -14.36489 -13.97734 -13.93927 -13.65849 -13.26622 -13.06112 -12.81584 -12.66763 -12.31059 -12.16277 -11.89954 -11.86772 -11.42549 -11.18584 -11.13709 -11.07078 -10.95401 -10.88572 -10.55552 -10.41524 -10.32165 -10.28785 -9.74077 -9.49956 -9.32323 -9.09995 -7.96257 -7.39220 -7.25252 -6.73076 -4.31514 2.77325 3.08595 3.11776 3.12393 3.15077 3.21159 3.70337 3.95302 4.24858 4.38905 4.54639 4.58838 4.72382 4.77623 4.89358 5.04410 5.12576 5.18548 5.36338 5.44621 5.57402 5.61425 5.74975 5.77609 5.86144 5.91621 5.94273 6.04480 6.20080 6.27342 6.36627 6.42425 6.49598 6.56855 6.80921 6.99673 7.10354 7.30895 7.33704 7.41949 7.52722 7.65973 7.91741 8.09457 8.19289 8.34077 8.68644 8.93237 9.01995 10.21429 Molecular weight = 303.16amu Principal moments of inertia in cm(-1) A = 0.034971 B = 0.002713 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.470600 B =10318.469118 C =10552.071837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.168 4.168 11 C -0.079 4.079 12 C -0.211 4.211 13 C 0.111 3.889 14 N -0.509 5.509 15 C 0.046 3.954 16 C -0.119 4.119 17 C -0.105 4.105 18 H 0.098 0.902 19 C 0.241 3.759 20 O -0.370 6.370 21 C 0.015 3.985 22 C 0.021 3.979 23 O -0.382 6.382 24 C 0.041 3.959 25 C -0.083 4.083 26 C -0.227 4.227 27 H 0.280 0.720 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.577 -18.725 -6.641 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.110 3.890 10 C -0.187 4.187 11 C -0.098 4.098 12 C -0.213 4.213 13 C -0.015 4.015 14 N -0.233 5.233 15 C -0.081 4.081 16 C -0.157 4.157 17 C -0.124 4.124 18 H 0.117 0.883 19 C 0.146 3.854 20 O -0.291 6.291 21 C -0.061 4.061 22 C -0.055 4.055 23 O -0.303 6.303 24 C -0.087 4.087 25 C -0.102 4.102 26 C -0.247 4.247 27 H 0.091 0.909 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.148 -18.040 -7.036 19.397 hybrid contribution 0.592 0.098 0.790 0.992 sum 1.740 -17.942 -6.247 19.078 Atomic orbital electron populations 1.69834 1.07567 1.29135 1.35293 1.25906 0.94709 1.01264 0.92280 0.86333 0.80488 0.80695 0.79310 1.19276 1.20358 1.18674 1.19595 0.98115 0.91338 1.40288 0.90546 1.17616 0.91086 0.91930 0.88366 1.21309 0.99403 0.96778 1.01203 1.20499 0.98328 0.92467 0.98540 1.18867 1.01465 0.92847 1.08113 1.20888 0.97815 0.94395 0.88430 1.64964 1.04851 1.19208 1.34295 1.22762 0.89090 0.97414 0.98877 1.22371 0.96497 0.97394 0.99481 1.22555 0.97080 0.91606 1.01171 0.88336 1.24015 0.91756 0.93829 0.75839 1.89284 1.71225 1.42220 1.26345 1.24372 0.93628 0.89171 0.98978 1.24181 0.93321 0.96202 0.91842 1.88894 1.38855 1.70091 1.32463 1.23158 0.97532 0.90295 0.97685 1.20366 0.95604 0.96085 0.98119 1.20919 1.03718 0.92950 1.07108 0.90921 0.86529 0.89443 0.91533 0.95710 0.93321 0.90358 0.91544 0.91460 0.89782 0.90714 0.87420 0.88412 0.90534 0.90494 0.93262 0.89977 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.78 10.95 55.55 0.61 -20.17 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.91 29.60 -169.99 -5.03 13.88 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.49 9.05 -37.74 -0.34 -12.83 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.11 3.04 5.57 -106.83 -0.60 2.45 16 10 C -0.17 -4.43 8.70 -38.87 -0.34 -4.77 16 11 C -0.08 -1.90 9.67 -39.66 -0.38 -2.28 16 12 C -0.21 -4.67 4.75 -104.33 -0.50 -5.17 16 13 C 0.11 2.07 5.18 -4.97 -0.03 2.04 16 14 N -0.51 -8.70 5.39 -231.89 -1.25 -9.95 16 15 C 0.05 0.78 5.36 -2.75 -0.01 0.76 16 16 C -0.12 -1.63 6.25 -25.37 -0.16 -1.79 16 17 C -0.10 -1.32 3.21 -88.76 -0.29 -1.61 16 18 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.24 2.66 3.72 37.16 0.14 2.80 16 20 O -0.37 -4.21 9.49 -59.04 -0.56 -4.77 16 21 C 0.02 0.11 7.95 38.17 0.30 0.42 16 22 C 0.02 0.16 8.07 38.17 0.31 0.47 16 23 O -0.38 -4.20 11.07 -59.04 -0.65 -4.85 16 24 C 0.04 0.58 5.96 -1.90 -0.01 0.57 16 25 C -0.08 -1.88 8.27 -39.66 -0.33 -2.20 16 26 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 27 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 28 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 29 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 31 H 0.02 0.45 7.83 -51.93 -0.41 0.04 16 32 H 0.05 0.86 5.82 -51.93 -0.30 0.56 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 34 H 0.07 0.88 7.01 -51.93 -0.36 0.52 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.71 7.15 -51.93 -0.37 0.34 16 43 H 0.08 1.68 7.07 -52.49 -0.37 1.31 16 44 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -28.97 349.19 -11.08 -40.05 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.76 Total: 5.88 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -2.70 Total: -25.33 kcal Atomic # 7 Polarization: -29.48 SS G_CDS: -0.64 Total: -30.12 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.21 Total: -9.62 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.97 -11.08 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719107317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.467 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds